Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  210  of  210  ( 25152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62452795--62452854
26
2.3
25
77
8
66
73
0
5
21
1.02
62453669--62453709
16
2.6
16
92
0
64
21
17
29
31
1.96
62459738--62459775
19
2.0
20
84
5
51
60
2
2
34
1.24
62468211--62468238
14
2.0
14
100
0
56
35
7
21
35
1.81
62468825--62468865
20
2.0
20
100
0
82
60
4
4
29
1.38
62469453--62469511
21
2.8
21
81
2
82
38
0
1
59
1.08
62469447--62469519
22
3.5
22
69
14
55
43
0
1
54
1.08
62470658--62470704
17
3.1
14
82
17
58
65
0
0
34
0.93
62478912--62478964
20
2.8
19
80
8
63
24
15
0
60
1.35
62479466--62479509
24
1.9
24
86
9
65
47
0
2
50
1.13
62479528--62479570
23
2.0
23
86
9
63
48
0
4
46
1.22
62486631--62486669
16
2.3
16
82
8
51
41
5
0
53
1.23
62491955--62492011
30
1.9
30
92
0
96
43
14
15
26
1.85
62496914--62496983
16
4.4
16
96
0
104
31
0
35
32
1.58
62496962--62497071
45
2.6
43
80
9
129
33
5
29
31
1.80
62497197--62497238
15
2.7
16
82
14
52
52
2
0
45
1.13
62497206--62497247
15
2.9
15
82
10
52
52
0
0
47
1.00
62497272--62497436
41
4.2
39
64
18
97
49
6
2
41
1.42
62497200--62497369
61
2.9
56
69
19
148
51
5
0
42
1.28
62497200--62497492
120
2.4
120
91
4
466
49
5
2
43
1.36
62497217--62497395
57
3.1
55
68
19
155
49
5
0
44
1.30
62497474--62497640
47
3.6
46
71
12
146
47
4
2
45
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62497533--62497604
28
2.6
28
84
8
85
51
4
0
44
1.20
62497772--62497816
22
2.0
22
100
0
90
42
13
0
44
1.43
62500440--62500470
5
6.0
5
92
7
53
61
0
0
38
0.96
62504742--62504766
12
2.1
12
100
0
50
60
0
0
40
0.97
62511421--62511480
3
20.0
3
100
0
120
66
0
0
33
0.92
62511847--62511877
5
6.0
5
92
7
53
61
0
0
38
0.96
62512765--62512804
21
2.0
20
85
5
53
62
2
0
35
1.09
62525612--62525668
30
1.9
30
88
0
87
43
14
17
24
1.86
62530539--62530564
1
26.0
1
100
0
52
0
0
0
100
0.00
62535352--62535382
5
6.0
5
92
7
53
61
0
0
38
0.96
62535411--62535482
32
2.4
30
77
13
85
29
9
16
44
1.80
62541562--62541609
20
2.5
19
86
6
69
43
25
4
27
1.72
62542029--62542106
35
2.2
34
80
10
86
66
0
1
32
1.00
62546391--62546604
118
1.8
118
98
0
419
36
17
14
31
1.90
62550892--62551013
9
13.0
9
70
17
70
34
0
5
59
1.27
62550954--62551004
22
2.5
22
84
9
72
35
0
7
56
1.28
62550876--62551017
18
7.4
18
69
15
63
33
0
7
59
1.30
62550938--62551017
40
2.1
38
83
9
99
30
0
8
61
1.26
62558290--62558355
33
2.0
33
82
11
82
46
1
1
50
1.20
62562529--62562586
10
6.0
10
73
13
50
63
1
0
34
1.04
62562532--62562592
28
2.1
29
90
3
97
68
1
1
27
1.08
62562935--62562975
22
1.9
22
85
14
59
19
4
4
70
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62562928--62563014
33
2.7
33
79
15
92
21
3
3
71
1.16
62562945--62562997
18
3.2
16
75
12
54
20
3
3
71
1.17
62562957--62563014
18
3.3
18
71
24
52
22
3
1
72
1.09
62565963--62566060
42
2.3
42
94
0
169
46
15
13
24
1.81
62568283--62568539
128
2.0
128
97
0
487
33
15
17
33
1.91
62571092--62571126
6
5.8
6
100
0
70
51
0
0
48
1.00
62576913--62577017
50
2.1
51
96
1
194
20
9
26
43
1.82
62584403--62584427
5
5.0
5
100
0
50
60
0
0
40
0.97
62585756--62585784
14
2.0
15
93
6
51
79
6
13
0
0.93
62587221--62587249
2
14.5
2
100
0
58
51
0
0
48
1.00
62597009--62597046
5
7.6
5
100
0
76
39
21
21
18
1.93
62607057--62607117
30
2.0
30
100
0
122
44
6
9
39
1.64
62613645--62613669
2
12.5
2
100
0
50
48
52
0
0
1.00
62618995--62619096
50
2.0
51
90
3
161
29
7
17
45
1.77
62628185--62628217
2
16.5
2
100
0
66
48
0
0
51
1.00
62647173--62647321
78
1.9
78
91
0
244
27
22
21
28
1.99
62650814--62650863
21
2.4
21
100
0
100
10
22
36
32
1.87
62650912--62650976
31
2.1
31
91
0
103
20
23
27
29
1.98
62650911--62650968
16
3.7
15
75
13
55
24
24
22
29
1.99
62654059--62654103
19
2.3
19
96
3
81
4
8
6
80
1.03
62660090--62660195
55
1.9
56
98
1
205
33
12
9
45
1.74
62667830--62667877
21
2.2
22
88
3
71
8
10
39
41
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62667868--62667920
16
3.4
16
92
2
81
3
3
56
35
1.35
62668076--62668123
25
1.9
25
86
0
69
14
8
6
70
1.31
62670649--62670808
80
2.0
80
98
0
311
36
14
16
33
1.89
62671056--62671095
21
1.9
21
94
0
71
5
17
30
47
1.69
62671126--62671177
15
3.4
15
68
5
50
19
30
23
26
1.98
62680816--62680891
31
2.5
31
78
8
84
28
21
22
27
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210

The End!