genome.fa.s11.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  126  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38336341--38336767	122	3.5	120	95	1	766	42	0	4	52	1.26
38336908--38337000	44	2.1	45	86	9	129	35	27	4	32	1.77
38341504--38341550	16	2.9	16	80	3	58	48	0	2	48	1.13
38351730--38351902	75	2.3	75	86	1	229	28	16	27	27	1.97
38357878--38357911	7	5.0	7	85	7	52	11	11	0	76	1.02
38357878--38357911	13	2.5	13	90	4	50	11	11	0	76	1.02
38357941--38357975	6	5.5	6	87	12	52	14	17	0	68	1.21
38364877--38364911	18	1.9	18	94	0	61	14	40	25	20	1.90
38368953--38368982	9	3.3	9	90	0	51	80	3	6	10	1.01
38368871--38369073	75	2.7	75	83	3	239	63	7	13	15	1.51
38380981--38381046	31	2.1	31	86	5	89	33	13	12	40	1.82
38382342--38382384	22	2.0	22	90	4	70	41	4	2	51	1.35
38386532--38386589	26	2.2	26	82	11	66	56	3	8	31	1.46
38387100--38387302	23	8.7	24	73	12	120	39	19	13	27	1.89
38387115--38387351	70	3.4	69	81	5	244	42	16	13	27	1.86
38387173--38387369	23	8.5	23	73	4	171	42	15	16	25	1.87
38387153--38387371	70	3.1	70	83	2	269	42	16	15	26	1.87
38387173--38387369	47	4.2	47	74	8	154	42	15	16	25	1.87
38388095--38388219	28	4.5	28	91	0	196	32	26	11	30	1.91
38389543--38389669	20	6.4	19	75	12	78	14	30	16	38	1.88
38389543--38389652	40	2.7	38	79	5	103	15	30	16	37	1.90
38389617--38389710	40	2.3	38	81	15	100	9	31	19	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38389584--38389701	60	2.0	60	81	3	139	11	32	18	38	1.86
38397039--38397068	11	2.6	12	94	5	53	16	6	0	76	0.99
38401423--38401458	12	3.0	12	92	8	56	25	8	0	66	1.19
38401422--38401458	13	3.0	13	84	11	51	24	8	0	67	1.17
38404631--38404669	20	2.0	19	90	5	60	43	43	2	10	1.52
38408416--38408472	28	2.0	28	93	0	96	35	15	19	29	1.93
38410187--38410212	13	2.0	13	100	0	52	23	30	30	15	1.95
38411476--38411506	16	1.9	16	100	0	62	54	25	12	6	1.62
38411492--38411592	43	2.3	43	87	0	148	31	32	17	17	1.94
38414395--38414462	31	2.2	31	94	0	118	45	10	25	19	1.81
38418430--38418646	115	1.9	114	82	7	269	42	28	1	27	1.66
38419386--38419709	41	7.9	41	84	1	407	29	28	23	18	1.98
38421857--38421911	24	2.4	23	93	6	94	38	7	3	50	1.48
38424272--38424325	27	2.0	27	96	0	99	46	0	12	40	1.42
38425623--38425670	2	24.0	2	100	0	96	50	0	0	50	1.00
38426294--38426387	34	2.7	34	80	6	100	39	18	9	32	1.83
38426383--38426411	2	14.5	2	100	0	58	51	0	0	48	1.00
38426570--38426762	41	4.7	42	88	3	268	24	26	18	30	1.98
38427744--38427773	2	15.0	2	92	0	51	50	3	0	46	1.18
38431505--38431690	50	3.7	49	77	6	203	23	18	27	30	1.97
38431509--38431692	101	1.8	101	89	4	291	23	18	27	30	1.97
38438749--38438805	6	10.0	6	74	14	50	75	0	19	5	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38438749--38438805	11	5.1	11	74	18	55	75	0	19	5	0.99
38451837--38451917	43	1.9	42	87	2	117	18	23	23	34	1.96
38451836--38451926	42	2.1	43	81	2	112	19	23	21	35	1.96
38454064--38454106	21	2.0	22	86	4	61	39	0	4	55	1.20
38454899--38454997	50	2.0	49	84	5	128	29	14	11	45	1.79
38457923--38457971	18	2.7	18	87	0	71	57	18	10	14	1.65
38462610--38462650	13	3.2	13	75	25	50	0	31	21	46	1.52
38464952--38465003	24	2.2	24	100	0	104	19	26	17	36	1.94
38473826--38473884	30	2.0	30	100	0	118	23	15	30	30	1.95
38474133--38474226	46	2.0	46	100	0	188	38	18	10	32	1.85
38481257--38481324	31	2.2	31	97	0	127	48	7	14	29	1.71
38482845--38482889	22	2.1	21	83	4	54	13	20	2	64	1.38
38487650--38487680	9	3.4	9	90	0	53	25	12	22	38	1.90
38487734--38487770	9	4.1	9	89	0	56	45	10	10	32	1.74
38500083--38500204	60	2.0	60	100	0	244	25	19	20	34	1.96
38513216--38513398	92	2.0	92	94	2	323	21	8	19	51	1.72
38513356--38513405	22	2.3	21	80	12	57	34	2	18	46	1.60
38515068--38515182	43	2.7	43	76	16	121	25	20	24	30	1.98
38517807--38517879	36	2.0	36	97	0	137	24	12	12	50	1.74
38518548--38518608	23	2.7	23	72	10	61	44	24	13	18	1.85
38524094--38524136	20	2.0	22	86	8	63	27	16	13	41	1.86
38527157--38527381	115	2.0	115	95	0	405	35	11	20	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38529682--38529715	7	4.9	7	92	0	50	41	5	0	52	1.25
38529706--38529740	17	2.1	17	89	5	54	31	0	2	65	1.07
38530032--38530062	16	1.9	16	93	0	53	54	9	0	35	1.33
38530108--38530142	7	5.0	7	96	0	61	45	0	0	54	0.99
38530108--38530151	15	3.0	15	90	3	63	50	0	0	50	1.00
38530109--38530151	7	6.0	7	94	2	50	51	0	0	48	1.00
38531032--38531063	16	1.9	17	93	6	57	21	3	0	75	0.95
38531048--38531073	11	2.4	11	100	0	52	30	0	0	69	0.89
38531030--38531090	27	2.3	27	82	0	77	26	3	0	70	1.02
38531305--38531358	19	2.8	20	78	15	60	53	5	1	38	1.35
38531305--38531532	111	2.1	109	83	8	247	48	7	6	37	1.58
38537213--38537260	24	2.0	24	95	0	87	18	29	20	31	1.97
38541122--38541214	37	2.5	38	85	5	118	13	11	41	32	1.81
38543681--38543768	43	2.0	43	100	0	176	35	28	6	29	1.83
38546813--38546841	15	1.9	15	100	0	58	41	0	0	58	0.98
38547900--38548011	40	2.8	41	83	1	145	20	28	16	33	1.95
38547900--38548044	40	3.6	40	79	7	141	22	27	17	32	1.96
38550729--38550767	19	2.1	19	95	4	71	64	2	0	33	1.08
38558753--38558784	11	2.8	12	90	9	57	46	0	0	53	1.00
38565559--38565667	55	2.0	55	89	3	166	50	14	8	26	1.71
38570302--38570350	25	2.0	25	83	0	62	24	20	20	34	1.96
38570312--38570369	25	2.3	25	84	0	71	25	20	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38570554--38570602	21	2.3	21	96	3	89	36	4	20	38	1.72
38575900--38575931	16	2.0	16	93	0	55	25	15	0	59	1.36
38576159--38576345	51	3.7	50	77	9	209	31	26	17	24	1.97
38576157--38576341	101	1.8	102	89	3	293	31	26	17	24	1.97
38577920--38577982	33	1.9	33	93	0	108	30	12	30	26	1.93
38580379--38580462	25	3.4	25	85	5	98	21	25	19	34	1.96
38589107--38589161	29	2.0	28	82	7	67	20	1	5	72	1.13
38590543--38590739	98	2.0	98	98	0	385	27	10	24	37	1.88
38592287--38592324	19	2.0	19	89	0	58	52	5	10	31	1.58
38593084--38593474	123	3.2	124	88	2	574	29	8	17	44	1.78
38593084--38593454	31	12.1	31	89	1	532	29	8	17	44	1.78
38593083--38593451	92	4.0	92	92	0	585	28	8	17	44	1.78
38600854--38600954	48	2.1	49	86	1	141	23	29	19	26	1.98
38607835--38608180	35	9.6	36	73	17	240	23	17	15	43	1.87
38607871--38608026	78	2.0	78	97	0	294	23	17	16	43	1.87
38607909--38608026	34	3.0	41	74	22	151	23	18	16	41	1.89
38607949--38608149	69	2.9	68	78	9	208	22	16	17	43	1.88
38607952--38608181	104	2.2	105	85	5	295	24	16	15	43	1.87
38609152--38609208	26	2.2	26	78	6	62	10	17	1	70	1.24
38609790--38609860	21	3.4	21	76	7	56	15	29	25	29	1.96
38611302--38611345	17	2.5	18	82	14	56	38	0	2	59	1.10
38611302--38611345	16	2.5	18	85	10	56	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38625076--38625115	16	2.4	17	83	8	55	70	12	2	15	1.28
38629389--38629506	38	3.2	38	63	18	102	41	13	26	18	1.88
38629384--38629532	74	2.0	74	100	0	298	40	16	25	17	1.89
38634075--38634120	24	2.0	24	86	4	67	45	8	10	34	1.70
38640475--38640516	17	2.5	16	82	17	50	28	0	2	69	1.01
38644108--38644174	34	1.9	35	87	3	100	31	8	14	44	1.76
38645214--38645330	49	2.4	49	79	0	126	25	20	23	29	1.99
38646220--38646275	16	3.5	16	75	0	67	48	7	16	28	1.72
38646531--38646624	39	2.4	38	86	10	129	35	2	0	62	1.07
38646559--38646613	28	2.0	28	82	7	67	36	3	0	60	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210