genome.fa.s11.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  150  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45580035--45580095	17	3.6	17	77	4	61	29	1	29	39	1.67
45582296--45582333	20	1.9	20	88	0	58	57	0	5	36	1.21
45587153--45587202	21	2.5	20	83	9	66	12	2	22	64	1.37
45588449--45588485	18	2.1	18	89	0	56	29	18	13	37	1.90
45588862--45588906	8	5.6	8	83	0	63	82	2	0	15	0.77
45591316--45591341	13	2.0	13	100	0	52	46	0	0	53	1.00
45595657--45595704	18	2.7	18	100	0	96	35	14	12	37	1.84
45596089--45596260	72	2.4	71	84	4	247	25	6	13	54	1.64
45598034--45598077	19	2.3	19	80	7	54	47	2	0	50	1.13
45605063--45605174	56	2.0	56	98	0	215	35	31	7	25	1.83
45607662--45607702	21	2.0	21	90	0	64	19	26	4	48	1.69
45611204--45611279	37	2.0	38	84	2	100	26	22	22	28	1.99
45615175--45615214	21	2.0	20	85	14	55	30	15	10	45	1.78
45616586--45616669	44	2.0	42	93	6	143	45	16	4	33	1.69
45628524--45628553	15	1.9	16	93	6	53	33	36	0	30	1.58
45629266--45629351	42	2.0	42	100	0	172	41	20	2	34	1.65
45629866--45629930	28	2.2	31	83	8	82	44	3	7	44	1.48
45630146--45630203	28	2.1	28	80	6	64	34	3	6	55	1.44
45632975--45633883	89	10.2	89	93	0	1478	27	23	17	31	1.97
45634758--45634782	13	1.9	13	100	0	50	56	8	24	12	1.62
45635162--45635193	13	2.3	15	84	15	50	12	15	0	71	1.14
45635163--45635194	14	2.4	13	94	5	55	12	18	0	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45636163--45636203	18	2.3	18	87	4	57	60	4	19	14	1.51
45650780--45650863	25	3.2	27	62	21	70	19	16	10	53	1.71
45658185--45658215	14	2.2	14	94	0	53	41	3	25	29	1.71
45660648--45660766	48	2.5	48	81	0	148	31	21	15	31	1.95
45660749--45660926	96	1.9	96	84	2	241	27	21	15	35	1.94
45663184--45663261	39	2.0	39	84	0	102	42	23	6	28	1.78
45665439--45665490	25	2.1	25	82	7	61	21	17	28	32	1.96
45684438--45684467	2	15.0	2	100	0	60	50	0	0	50	1.00
45688596--45688627	3	10.7	3	100	0	64	31	0	0	68	0.90
45691145--45691210	35	1.9	34	87	6	98	31	9	13	45	1.75
45691159--45691198	20	2.0	20	85	0	53	27	12	12	47	1.77
45694412--45694444	6	5.5	6	96	0	57	36	0	63	0	0.95
45698945--45698986	17	2.5	17	80	3	50	40	4	0	54	1.21
45699033--45699074	14	3.2	13	87	9	59	50	0	2	47	1.14
45705155--45705209	23	2.3	25	79	17	64	40	3	9	47	1.53
45711400--45711438	7	5.1	8	84	12	55	51	0	0	48	1.00
45711399--45711438	15	2.7	15	84	0	62	52	0	0	47	1.00
45711399--45711442	7	6.1	7	82	12	54	56	0	0	43	0.99
45712243--45712303	24	2.5	24	74	12	63	24	1	27	45	1.62
45719433--45719551	54	2.2	54	78	3	123	22	24	26	26	2.00
45721028--45721226	63	3.2	63	85	0	227	25	19	24	30	1.98
45731419--45731456	15	2.7	15	88	12	62	65	0	28	5	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45731660--45731752	46	2.0	46	100	0	186	38	17	13	30	1.89
45749765--45749803	20	2.0	20	90	5	62	66	2	0	30	1.05
45750981--45751011	13	2.4	13	94	0	53	61	3	6	29	1.37
45751046--45751095	19	2.7	19	76	11	59	72	2	8	18	1.19
45762423--45762463	15	2.4	18	80	15	52	34	7	0	58	1.26
45762559--45762589	11	2.8	11	100	0	62	16	0	0	83	0.64
45762599--45762623	2	12.5	2	100	0	50	48	0	0	52	1.00
45768070--45768113	6	7.2	6	86	2	52	59	0	25	15	1.37
45768070--45768112	12	3.5	12	83	3	59	58	0	25	16	1.38
45768070--45768112	18	2.3	18	92	4	68	58	0	25	16	1.38
45769948--45769988	13	3.2	13	74	19	50	29	14	24	31	1.95
45769936--45770014	25	3.2	24	72	13	79	25	16	24	34	1.95
45769946--45770028	25	3.3	25	77	11	98	28	14	21	34	1.93
45771846--45771911	33	2.0	33	97	2	125	21	24	6	48	1.72
45787610--45787766	58	2.6	62	88	7	216	42	0	2	54	1.18
45797208--45797278	31	2.4	31	83	4	83	39	5	2	52	1.40
45808679--45808715	18	2.1	18	100	0	74	27	21	27	24	1.99
45809323--45809417	47	2.0	47	100	0	190	29	21	12	36	1.90
45813205--45813383	25	7.2	25	70	10	116	36	25	10	26	1.89
45813372--45813456	26	3.4	26	69	11	70	35	21	15	28	1.93
45817790--45817848	29	2.0	29	100	0	118	28	13	23	33	1.93
45822898--45823062	74	2.2	74	94	0	294	44	36	1	17	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45823222--45823267	11	4.3	11	80	5	58	86	2	10	0	0.64
45823221--45823267	20	2.4	19	89	3	67	85	2	12	0	0.70
45835494--45835535	15	2.9	14	89	6	66	19	2	0	78	0.86
45835629--45835662	14	2.3	15	85	10	52	20	2	2	73	1.09
45835716--45835764	21	2.5	20	87	9	66	14	6	6	73	1.22
45835710--45835764	18	2.9	18	83	8	65	12	7	5	74	1.20
45836649--45836680	11	2.8	12	86	13	50	81	0	18	0	0.70
45838117--45838261	72	2.0	72	100	0	290	33	11	19	36	1.87
45846933--45847452	258	2.0	257	95	1	934	22	15	21	40	1.91
45852059--45852221	50	3.3	50	84	1	202	37	22	13	26	1.91
45852141--45852221	25	3.2	25	72	6	83	33	22	17	27	1.96
45855706--45855757	24	2.2	24	92	0	86	38	13	34	13	1.84
45862216--45862304	23	3.9	23	81	0	88	47	25	14	12	1.79
45868951--45869085	25	5.4	24	77	7	101	36	23	16	23	1.94
45880634--45880658	3	8.3	3	100	0	50	0	32	0	68	0.90
45885469--45885511	14	3.3	13	78	12	52	74	9	13	2	1.16
45889670--45889713	18	2.4	18	80	3	52	52	11	9	27	1.67
45889885--45889926	21	2.0	21	100	0	84	19	0	19	61	1.34
45894707--45894745	18	2.2	18	95	0	69	12	5	10	71	1.28
45894712--45894757	18	2.5	19	82	10	60	13	6	6	73	1.22
45897243--45897302	30	2.0	30	87	3	86	10	30	33	26	1.89
45906976--45907050	23	3.3	23	81	3	82	41	21	18	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45907370--45907419	25	2.0	25	84	11	66	36	22	0	42	1.54
45907791--45907815	11	2.3	11	100	0	50	28	20	0	52	1.47
45912121--45912175	22	2.5	21	91	2	83	52	23	5	18	1.65
45914326--45914704	43	8.8	43	88	3	507	25	31	21	22	1.98
45915023--45915076	21	2.6	21	87	0	81	7	46	14	31	1.73
45915044--45915241	87	2.3	87	83	5	231	12	29	18	40	1.86
45920739--45921148	16	26.7	15	67	29	128	40	2	11	45	1.53
45920716--45920954	40	5.2	42	64	26	112	38	2	12	46	1.55
45920779--45920915	34	4.3	33	64	26	89	40	2	10	46	1.51
45920724--45921192	93	5.1	93	90	6	765	39	2	11	46	1.54
45921005--45921054	15	2.9	17	80	19	68	36	2	14	48	1.55
45921005--45921148	34	4.1	34	73	18	125	39	2	12	45	1.54
45920724--45921179	182	2.5	183	92	4	751	39	2	11	46	1.54
45924624--45924856	74	3.2	74	95	0	414	33	18	18	29	1.95
45924956--45924996	2	21.5	2	87	9	59	51	2	0	46	1.14
45924962--45925000	21	2.0	21	90	10	64	53	2	0	43	1.14
45925966--45926059	41	2.3	41	81	3	118	18	25	25	30	1.98
45926030--45926294	41	6.5	41	81	6	281	32	23	24	18	1.97
45926048--45926280	123	1.9	122	84	4	317	33	25	24	16	1.96
45926490--45926514	12	2.1	12	100	0	50	32	36	24	8	1.84
45950640--45950722	29	2.9	29	90	0	130	34	25	10	28	1.90
45956578--45956671	49	1.9	49	91	0	152	24	25	7	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45959207--45959247	16	2.4	17	88	8	57	24	7	2	65	1.30
45959328--45959579	43	5.9	43	89	2	364	31	30	17	20	1.96
45960505--45961302	91	8.7	91	79	7	628	40	23	5	30	1.77
45960596--45961310	137	5.2	136	79	6	680	40	23	5	30	1.76
45960702--45961187	160	3.0	160	93	0	812	40	23	5	30	1.78
45960491--45961028	114	4.7	114	76	8	479	39	24	5	30	1.78
45960491--45961310	160	5.1	160	81	7	744	40	23	5	30	1.77
45960491--45961313	23	36.0	23	72	11	525	40	23	5	30	1.77
45964241--45964318	41	1.9	40	89	2	120	30	29	17	21	1.97
45964380--45964479	40	2.5	40	82	4	123	17	26	24	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210