genome.fa.s11.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  136  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41429658--41429743	9	9.4	9	85	7	111	22	10	26	40	1.86
41432878--41432922	16	2.9	16	83	9	58	51	0	6	42	1.28
41442082--41442145	20	3.0	22	72	9	78	43	14	18	23	1.86
41442072--41442166	42	2.3	42	94	3	165	43	13	18	24	1.87
41442095--41442163	20	3.3	20	73	11	68	44	15	17	21	1.86
41442082--41442151	22	3.3	23	70	22	71	44	14	18	22	1.86
41450870--41451003	25	5.5	24	73	20	125	33	22	23	20	1.97
41450884--41451011	25	5.2	25	79	14	149	34	22	22	20	1.97
41450839--41451011	49	3.5	49	91	2	258	31	21	23	23	1.99
41452262--41452302	19	2.2	19	90	0	64	51	21	4	21	1.67
41456949--41457022	20	3.8	19	75	10	69	14	28	21	35	1.93
41456979--41457048	20	3.5	20	75	11	65	17	30	21	31	1.96
41457938--41457971	18	1.9	18	88	5	52	29	17	2	50	1.61
41463791--41463844	23	2.3	23	87	6	74	35	14	24	25	1.94
41466595--41466637	22	2.0	21	82	13	52	60	2	4	32	1.30
41467773--41467874	44	2.3	44	87	0	150	17	14	24	43	1.87
41470086--41470127	20	2.1	20	100	0	84	28	11	0	59	1.33
41471170--41471212	11	3.9	11	84	0	59	41	4	6	46	1.51
41478396--41478514	60	2.0	60	88	0	175	17	21	30	31	1.96
41478545--41478762	120	1.8	120	81	2	276	20	20	26	33	1.97
41478545--41478762	60	3.6	60	80	2	231	20	20	26	33	1.97
41484686--41484718	14	2.4	14	94	0	57	75	3	0	21	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41492584--41492665	38	2.2	38	84	2	103	23	12	36	28	1.90
41497641--41497832	63	3.1	63	80	0	206	26	22	29	21	1.99
41503276--41503474	63	3.2	63	79	2	175	26	24	27	22	2.00
41503304--41503531	126	1.8	126	86	3	334	24	23	28	23	1.99
41503302--41503547	63	3.9	64	81	3	268	24	23	29	22	1.99
41507224--41507248	3	8.3	3	100	0	50	68	0	32	0	0.90
41512414--41512503	40	2.2	40	76	7	94	12	30	21	36	1.90
41518787--41518906	43	2.8	42	77	6	125	30	15	15	37	1.90
41519075--41519197	25	4.9	25	83	0	120	34	7	23	34	1.83
41519061--41519217	75	2.1	72	82	3	188	35	7	22	34	1.83
41519385--41519416	16	2.0	16	93	0	55	25	34	18	21	1.96
41519667--41519806	22	6.2	22	69	5	84	31	12	22	33	1.91
41519642--41519795	45	3.4	45	80	0	157	33	12	22	32	1.91
41520362--41520404	17	2.5	17	88	0	59	27	2	18	51	1.59
41522507--41522646	50	2.7	52	86	5	187	29	30	17	23	1.97
41525768--41525913	49	3.0	48	86	5	211	31	28	13	26	1.93
41528518--41528550	14	2.5	13	90	9	50	39	27	9	24	1.85
41528422--41528608	51	3.7	50	79	5	205	29	27	18	24	1.98
41528415--41528643	102	2.2	102	83	4	275	30	27	17	25	1.97
41530874--41530898	13	1.9	13	100	0	50	48	8	0	44	1.32
41533852--41533895	22	2.0	22	90	0	70	38	25	4	31	1.76
41537197--41537312	40	2.8	41	79	8	128	34	4	11	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41537227--41537325	40	2.6	36	76	17	101	31	4	12	52	1.57
41539019--41539054	18	2.0	18	100	0	72	27	27	11	33	1.91
41542055--41542290	43	5.5	43	89	2	366	24	30	17	27	1.97
41542255--41542339	42	2.1	42	80	4	102	29	20	20	30	1.97
41542640--41542837	86	2.3	87	87	0	290	12	29	17	40	1.87
41542858--41542932	22	3.4	22	84	0	105	28	14	26	30	1.95
41542858--41542944	22	4.0	22	86	0	102	28	16	26	28	1.97
41545094--41545320	9	25.2	9	70	15	114	36	2	18	42	1.65
41545094--41545258	56	3.4	47	74	17	140	36	2	19	41	1.65
41545140--41545412	56	4.8	56	77	12	263	35	2	18	42	1.66
41545133--41545349	116	1.9	112	90	3	344	35	2	19	42	1.64
41545432--41545519	9	10.2	9	69	12	60	32	4	19	43	1.71
41545196--41545611	199	2.0	201	93	4	710	36	4	16	42	1.68
41545593--41545736	9	15.7	9	73	13	89	34	0	19	46	1.50
41545394--41545736	110	3.1	112	84	8	422	35	2	17	44	1.64
41545472--41545736	56	4.8	56	80	10	310	35	1	17	45	1.59
41545670--41545810	76	1.9	75	89	2	221	30	1	20	47	1.59
41545841--41545940	27	3.6	27	72	16	78	32	0	18	50	1.47
41545593--41545936	126	2.7	127	84	8	441	33	0	19	46	1.56
41545781--41545942	67	2.4	67	80	10	170	33	0	19	46	1.54
41545907--41545943	9	4.2	9	89	3	58	32	0	21	45	1.52
41546672--41546696	13	1.9	13	100	0	50	52	24	8	16	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41548040--41548079	19	2.0	20	85	4	55	27	2	45	25	1.66
41548476--41548517	18	2.2	20	83	8	52	42	0	4	52	1.22
41548897--41548952	28	2.0	28	82	3	67	51	26	0	21	1.48
41549007--41549044	20	1.9	20	88	0	58	47	31	2	18	1.62
41549426--41549462	19	1.9	19	88	0	56	37	43	0	18	1.51
41549426--41549507	14	5.8	14	69	13	51	34	40	0	25	1.56
41549447--41549544	35	2.7	36	80	6	99	35	36	1	26	1.64
41549944--41550180	41	5.8	40	88	2	321	27	30	21	21	1.98
41549944--41550183	82	2.9	82	88	2	356	27	30	21	20	1.98
41555185--41555264	19	3.9	19	77	15	88	50	15	1	33	1.52
41555183--41555269	43	2.0	43	100	0	174	50	13	2	33	1.55
41560564--41560686	40	3.1	40	85	2	131	17	29	21	31	1.96
41560582--41560692	20	5.6	20	75	16	104	18	29	21	30	1.97
41560595--41560710	60	1.9	59	81	8	137	17	30	20	31	1.95
41566661--41566783	40	3.1	40	84	2	122	17	30	21	30	1.96
41566678--41566807	20	6.6	20	73	12	108	16	30	20	31	1.95
41569794--41569842	23	2.1	23	85	7	64	55	10	8	26	1.61
41570551--41570623	32	2.3	32	82	0	92	30	35	20	13	1.91
41584082--41584138	28	2.0	28	83	6	71	54	7	1	36	1.38
41585601--41585641	17	2.5	17	80	11	50	41	0	2	56	1.13
41585686--41585716	16	2.0	16	93	6	55	38	0	0	61	0.96
41585711--41585768	14	3.9	14	77	16	55	60	1	1	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41585822--41585847	6	4.3	6	100	0	52	61	0	0	38	0.96
41589230--41589289	30	2.0	30	83	3	75	41	0	38	20	1.52
41589504--41589540	9	4.1	9	92	0	65	29	10	13	45	1.77
41601265--41601301	17	2.2	17	100	0	74	18	16	10	54	1.71
41601369--41601408	19	2.1	19	100	0	80	45	10	15	30	1.78
41613778--41613844	33	2.0	33	100	0	134	37	14	11	35	1.84
41628996--41629158	43	3.8	43	91	4	258	25	28	20	25	1.99
41629477--41629612	66	2.1	66	90	0	209	13	26	19	41	1.88
41631946--41632029	42	2.0	42	100	0	168	28	19	9	42	1.82
41635023--41635532	9	56.0	9	78	6	517	31	3	17	47	1.64
41635567--41635624	12	5.0	12	79	8	66	29	3	18	48	1.65
41635717--41635754	9	4.4	9	83	12	53	44	0	10	44	1.38
41635719--41635750	16	2.0	16	93	0	55	40	0	12	46	1.42
41635903--41635960	29	2.0	29	100	0	116	41	3	24	31	1.71
41640095--41640135	22	1.9	21	85	14	57	56	24	0	19	1.42
41640159--41640228	16	4.4	16	67	16	56	50	21	1	27	1.57
41640162--41640237	23	3.3	23	73	23	86	48	22	1	27	1.58
41640666--41640783	41	2.9	41	91	2	184	37	27	17	16	1.92
41641006--41641046	22	1.9	21	90	5	64	43	0	12	43	1.41
41641123--41641184	6	8.7	7	75	24	51	66	3	3	27	1.23
41641134--41641183	3	16.7	3	87	0	73	66	4	2	28	1.21
41641134--41641183	15	3.3	15	94	0	82	66	4	2	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41646756--41646819	13	4.9	13	84	0	92	31	7	25	35	1.84
41648073--41648136	19	3.1	19	76	23	74	51	21	25	1	1.57
41648086--41648145	25	2.4	25	97	0	111	46	26	25	1	1.62
41648490--41648532	19	2.3	18	84	11	52	62	6	9	20	1.48
41649086--41649118	2	16.5	2	93	0	57	48	3	0	48	1.17
41652070--41652137	35	2.0	35	82	8	86	30	20	26	22	1.98
41654668--41654714	22	2.1	22	85	14	62	57	2	2	38	1.23
41656488--41656554	24	2.8	24	86	0	80	46	0	35	17	1.49
41657060--41657098	12	3.3	11	86	13	51	10	0	5	84	0.76
41660536--41660569	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210