genome.fa.s23.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  100  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33009573--33009634	21	2.8	23	80	14	76	58	3	1	37	1.24
33009542--33009634	44	2.2	41	83	11	107	59	3	2	35	1.26
33009536--33009632	42	2.3	42	77	15	101	59	3	2	35	1.24
33011098--33011342	44	5.5	44	74	8	192	28	26	13	31	1.94
33011098--33011342	133	1.8	134	81	7	311	28	26	13	31	1.94
33011787--33011836	25	2.0	25	100	0	100	32	12	8	48	1.69
33018683--33018789	4	24.8	4	72	16	56	25	3	5	65	1.31
33019250--33019274	2	12.5	2	100	0	50	52	0	0	48	1.00
33029501--33029556	26	2.2	25	83	3	67	17	5	37	39	1.73
33030101--33030172	25	2.9	25	89	0	108	51	1	26	20	1.56
33037789--33037835	21	2.2	21	88	0	67	27	34	23	14	1.94
33037799--33037855	19	2.9	19	76	10	53	26	28	31	14	1.94
33041567--33041883	46	6.7	47	74	12	165	25	30	18	26	1.98
33041567--33041888	96	3.4	92	73	16	223	25	30	18	26	1.98
33041671--33041887	46	4.6	47	79	11	171	24	29	17	28	1.97
33048351--33049908	786	2.0	786	98	0	2990	36	18	13	31	1.90
33050182--33050331	40	3.8	40	90	0	237	29	28	18	23	1.98
33052185--33052250	28	2.4	28	94	0	114	19	45	18	16	1.86
33053246--33053458	92	2.3	93	83	8	247	24	29	18	27	1.98
33053331--33053458	47	2.8	44	80	13	143	25	28	18	27	1.98
33055614--33055656	22	2.0	22	86	4	61	53	2	0	44	1.13
33062191--33062376	40	4.7	40	84	5	200	26	22	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33062244--33062409	80	2.1	79	81	9	187	28	20	26	24	1.99
33064033--33064296	103	2.5	104	90	3	406	30	29	20	19	1.97
33073203--33073265	33	2.0	31	84	6	74	22	23	31	20	1.97
33093385--33093413	15	1.9	15	100	0	58	41	3	0	55	1.17
33093627--33093668	13	3.2	13	90	6	66	76	0	23	0	0.79
33094842--33094893	16	3.3	15	76	10	50	34	5	25	34	1.80
33095990--33096051	28	2.1	28	91	5	97	43	1	6	48	1.38
33097216--33097319	18	5.4	18	68	13	64	39	9	13	37	1.77
33097214--33097356	39	3.7	39	87	0	214	37	10	14	37	1.81
33099256--33099328	25	2.9	25	78	8	76	32	17	32	16	1.93
33099356--33099398	20	2.1	21	91	4	70	44	4	32	18	1.71
33100647--33100684	18	2.1	19	85	5	51	68	5	0	26	1.11
33100643--33100689	19	2.5	20	75	10	53	68	4	0	27	1.08
33103089--33103127	20	2.0	20	84	0	51	53	2	5	38	1.37
33103269--33103304	18	1.9	19	88	5	56	63	0	0	36	0.94
33103781--33103845	18	3.4	18	74	12	58	40	0	1	58	1.07
33110009--33110069	30	2.0	30	87	0	86	40	4	24	29	1.76
33110779--33110926	67	2.2	66	83	8	174	33	16	28	21	1.95
33113779--33113816	18	2.1	18	100	0	76	23	23	10	42	1.85
33114114--33114182	30	2.3	31	87	7	97	53	20	4	21	1.62
33114305--33114333	3	10.0	3	92	7	51	68	0	31	0	0.89
33115372--33115411	21	1.9	21	89	0	62	30	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33116085--33116202	52	2.2	52	86	4	157	19	20	21	38	1.93
33116101--33116223	52	2.4	51	78	14	128	19	17	18	44	1.87
33119143--33119169	13	2.1	13	100	0	54	62	0	14	22	1.31
33122104--33122174	21	3.2	21	66	30	58	36	12	23	26	1.91
33122098--33122370	46	6.0	46	90	1	352	39	15	23	20	1.91
33122656--33122688	17	2.0	17	94	5	59	51	0	12	36	1.39
33127221--33127277	30	1.9	30	82	7	71	40	1	14	43	1.55
33133772--33133797	5	5.2	5	100	0	52	0	57	42	0	0.98
33135203--33135263	5	12.0	5	92	1	95	39	21	1	37	1.63
33145058--33145091	17	2.0	17	88	0	50	70	0	0	29	0.87
33147324--33147357	17	2.1	17	88	5	52	70	0	0	29	0.87
33149951--33150033	43	1.9	43	82	4	105	32	14	20	32	1.93
33150821--33150849	13	2.1	14	93	6	51	55	10	0	34	1.34
33153787--33153847	28	2.2	28	78	0	68	37	14	22	24	1.92
33162448--33162624	48	3.7	48	88	1	248	24	17	30	27	1.97
33166276--33166380	48	2.2	48	80	10	115	20	16	33	30	1.94
33167937--33168004	27	2.5	27	95	0	118	36	20	19	23	1.95
33175030--33175099	36	1.9	36	94	0	122	17	17	24	41	1.89
33176549--33176586	13	2.8	13	88	4	58	42	0	13	44	1.43
33180057--33180167	43	2.6	42	79	9	118	24	20	25	29	1.99
33192780--33192821	21	2.0	21	85	0	57	28	2	0	69	1.01
33192789--33192829	21	2.0	21	85	0	55	31	4	2	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33194908--33194946	21	1.9	20	89	5	60	0	10	25	64	1.25
33196230--33196267	13	2.8	13	88	4	58	42	0	13	44	1.43
33197043--33197076	17	1.9	18	88	5	52	26	8	5	58	1.51
33204015--33204167	23	6.7	23	77	7	141	37	15	18	28	1.91
33204015--33204167	46	3.3	46	77	4	166	37	15	18	28	1.91
33204022--33204153	69	1.9	69	87	6	196	39	15	16	28	1.90
33204015--33204167	69	2.2	69	82	6	195	37	15	18	28	1.91
33208264--33208307	19	2.2	20	84	4	54	38	0	4	56	1.20
33210928--33211033	37	2.9	37	85	0	131	25	32	16	25	1.97
33211199--33211337	47	3.0	47	89	0	215	25	28	12	33	1.92
33222549--33222627	39	2.0	39	95	0	140	58	5	12	24	1.54
33224668--33224707	18	2.2	19	86	8	57	12	17	47	22	1.81
33225254--33225334	41	2.0	41	87	0	117	32	17	20	29	1.96
33225311--33225382	34	2.1	34	84	0	90	31	23	23	20	1.98
33227105--33227175	34	2.1	34	81	0	79	33	19	22	23	1.97
33228899--33228954	28	2.0	28	96	0	103	32	5	25	37	1.78
33247606--33247660	22	2.4	23	75	6	58	63	7	10	18	1.49
33250521--33250848	72	4.6	72	99	0	638	42	24	6	27	1.79
33250849--33250889	3	13.7	3	100	0	82	68	0	0	31	0.90
33253866--33253905	18	2.2	18	86	4	53	42	2	12	42	1.56
33254576--33254608	17	2.1	17	88	11	52	39	6	6	48	1.53
33265188--33265240	21	2.5	21	90	0	79	20	24	39	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33266503--33266542	16	2.6	16	84	7	57	50	2	0	47	1.14
33267018--33267060	18	2.6	16	82	13	52	65	0	0	34	0.93
33273462--33273540	39	2.0	39	95	0	140	34	25	17	22	1.96
33278487--33278541	14	3.9	14	77	13	58	27	16	30	25	1.96
33294957--33295038	40	2.0	40	97	0	155	25	12	34	28	1.92
33307372--33307447	40	1.9	40	88	0	116	15	11	34	38	1.84
33309035--33309263	48	4.8	48	87	0	314	31	25	16	27	1.97
33309225--33309327	37	2.8	37	80	2	109	25	26	19	29	1.99
33316840--33316954	55	2.1	54	93	1	194	60	5	11	23	1.51
33317624--33317661	18	2.1	19	90	9	62	63	0	0	36	0.95
33327015--33327067	26	2.0	27	85	7	74	22	11	24	41	1.86
33330047--33330258	43	5.0	43	77	10	193	27	27	17	26	1.98
33333048--33333477	154	2.8	150	88	4	628	42	4	9	43	1.58
33334271--33334305	19	1.9	18	88	11	54	34	11	2	51	1.53
33337524--33337607	37	2.3	37	82	0	105	40	14	21	23	1.90
33337992--33338038	17	2.8	16	75	18	51	51	0	4	44	1.21
33343637--33343671	18	1.9	18	88	0	52	22	20	28	28	1.98
33354869--33354903	17	2.1	17	89	10	54	82	0	8	8	0.83
33356191--33356712	45	11.8	44	67	7	203	28	18	22	29	1.98
33356189--33356523	133	2.5	133	87	0	481	28	19	22	29	1.98
33356285--33356712	178	2.4	177	83	2	509	28	17	23	30	1.97
33356463--33356807	133	2.6	133	84	4	408	29	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33356777--33356931	41	3.6	41	68	13	112	31	21	20	27	1.98
33357640--33357685	16	2.9	16	80	3	58	10	4	6	78	1.08
33357640--33357692	17	3.1	16	76	10	52	11	3	5	79	1.03
33358603--33358636	18	1.9	18	88	5	52	41	8	0	50	1.34
33363216--33363484	77	3.6	76	74	10	230	39	8	11	40	1.72
33363246--33363463	73	2.9	75	75	8	174	39	8	12	39	1.74
33364142--33364188	4	11.8	4	100	0	94	25	0	23	51	1.49
33375636--33375668	13	2.6	13	90	4	50	45	0	6	48	1.27
33384452--33384486	18	1.9	18	100	0	70	40	37	5	17	1.73
33391662--33391691	12	2.5	12	94	0	51	6	30	40	23	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167