genome.fa.s23.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  45  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13886408--13886442	18	1.9	18	88	0	52	74	8	0	17	1.06
13886600--13886635	17	2.0	19	89	10	58	55	2	2	38	1.29
13886786--13886821	7	5.0	7	86	6	54	66	0	2	30	1.06
13886786--13886821	15	2.5	14	86	8	54	66	0	2	30	1.06
13886850--13886882	17	1.9	17	100	0	66	60	0	3	36	1.12
13886851--13886894	17	2.5	17	88	3	61	65	2	2	29	1.16
13886938--13886975	19	2.0	19	89	0	58	63	0	2	34	1.09
13888726--13888777	27	1.9	27	92	7	88	46	0	1	51	1.12
13892451--13892542	42	2.2	41	80	5	103	14	22	20	42	1.88
13892727--13892772	23	2.0	23	84	12	60	43	10	8	36	1.71
13893904--13894051	76	1.9	76	94	0	260	24	17	6	51	1.69
13894644--13894683	19	2.1	19	100	0	80	42	10	17	30	1.82
13901731--13901761	16	1.9	16	100	0	62	45	3	19	32	1.66
13901731--13901773	16	2.7	16	89	7	61	41	2	23	32	1.67
13908984--13909021	20	1.9	20	88	0	58	44	0	18	36	1.50
13909408--13909550	43	3.3	43	72	11	148	33	23	19	23	1.97
13909400--13909598	87	2.3	84	88	5	285	32	25	20	21	1.98
13915352--13915397	20	2.4	19	81	3	56	32	13	13	41	1.82
13916254--13916322	32	2.2	32	86	0	102	43	2	0	53	1.15
13918888--13918916	3	9.7	3	100	0	58	34	0	34	31	1.58
13920662--13920708	23	2.0	23	88	8	69	44	2	0	53	1.12
13920806--13920848	16	2.6	17	78	10	54	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13920838--13920878	21	2.0	21	85	0	55	39	2	0	58	1.11
13924120--13924178	31	1.9	31	92	0	100	50	3	5	40	1.41
13924120--13924195	31	2.5	31	84	4	91	48	2	5	43	1.39
13926611--13926644	15	2.3	15	90	10	52	23	26	14	35	1.94
13936984--13937009	6	4.3	6	100	0	52	84	0	15	0	0.62
13946909--13946951	19	2.2	20	91	4	70	11	9	30	48	1.71
13951046--13951192	46	3.2	46	81	8	172	22	26	14	36	1.92
13951308--13951365	28	2.1	27	87	9	82	53	6	6	32	1.54
13964391--13964422	11	2.8	12	81	18	50	0	21	0	78	0.76
13964920--13964982	30	2.0	32	84	6	85	57	4	30	7	1.48
13965723--13965825	50	2.0	51	98	1	199	39	21	7	31	1.81
13966509--13966606	38	2.6	37	77	6	97	32	25	16	25	1.96
13967837--13968270	50	8.6	50	78	4	399	26	16	25	31	1.96
13967837--13968270	101	4.3	101	77	4	399	26	16	25	31	1.96
13967837--13968272	151	2.9	151	86	1	586	26	16	25	31	1.96
13968861--13969225	180	2.0	180	89	2	563	38	9	19	33	1.84
13969844--13969895	26	2.0	26	100	0	104	30	26	15	26	1.96
13971431--13971492	26	2.4	26	86	2	81	43	6	17	32	1.75
13986126--13986158	16	2.1	16	88	5	50	69	0	0	30	0.88
13986668--13986693	8	3.2	8	100	0	52	88	0	11	0	0.52
13992770--13993038	46	5.7	47	78	9	239	24	28	18	28	1.98
13992770--13993038	47	5.7	46	77	9	217	24	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14008705--14008761	6	9.5	6	78	12	55	19	3	0	77	0.92
14012882--14012911	15	2.0	15	100	0	60	13	40	13	33	1.83
14015506--14015535	16	1.9	15	93	6	51	16	20	3	60	1.50
14019037--14019110	30	2.5	30	95	0	139	20	29	29	20	1.97
14024122--14024146	13	1.9	13	100	0	50	16	24	40	20	1.91
14024657--14024696	17	2.4	17	86	0	53	20	5	2	72	1.15
14034529--14034584	28	2.0	28	86	10	78	30	42	8	17	1.80
14036831--14037013	47	3.9	48	80	9	207	22	30	18	28	1.98
14036833--14037054	47	4.7	46	77	10	182	23	29	18	27	1.98
14036872--14037054	94	2.0	93	86	3	260	23	30	18	27	1.98
14043368--14043512	43	3.4	43	75	11	136	28	17	23	30	1.97
14044077--14044104	2	14.0	2	100	0	56	0	0	50	50	1.00
14048302--14048338	14	2.4	16	86	8	51	64	21	0	13	1.27
14049589--14049654	30	2.2	29	94	2	114	57	6	3	33	1.38
14058456--14058603	79	1.9	79	92	0	251	39	14	9	36	1.79
14060002--14060040	14	2.9	14	88	3	53	64	0	0	35	0.94
14061569--14061614	21	2.2	21	85	14	60	58	4	6	30	1.43
14061577--14061686	20	5.5	18	70	25	71	60	1	3	34	1.25
14061608--14061686	12	6.6	12	69	23	51	59	1	2	36	1.19
14061610--14061656	14	3.4	14	74	11	51	59	2	4	34	1.29
14061609--14061661	28	1.9	28	85	11	74	60	1	3	33	1.26
14061958--14061991	12	2.8	12	90	0	50	67	0	2	29	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14063450--14063997	220	2.5	220	90	1	812	28	22	16	31	1.96
14075705--14075857	76	2.0	77	93	2	263	39	13	7	39	1.73
14076769--14076814	21	2.2	21	85	14	60	58	4	6	30	1.43
14076777--14076886	20	5.5	18	70	25	71	60	1	3	34	1.25
14076808--14076886	12	6.6	12	69	23	51	59	1	2	36	1.19
14076810--14076856	14	3.4	14	74	11	51	59	2	4	34	1.29
14076809--14076861	28	1.9	28	85	11	74	60	1	3	33	1.26
14088123--14088147	3	8.3	3	100	0	50	36	0	0	64	0.94
14090373--14090508	59	2.3	60	83	10	163	27	20	25	25	1.99
14090468--14090520	28	1.9	28	84	3	72	26	18	28	26	1.98
14096075--14096200	39	3.2	39	88	0	171	23	18	29	29	1.97
14096095--14096218	39	3.2	39	87	2	133	21	20	30	26	1.98
14113379--14113427	25	2.0	25	95	0	89	12	42	14	30	1.82
14115219--14115296	38	2.1	38	95	0	138	23	32	23	21	1.98
14122941--14123165	40	5.7	40	87	5	278	25	28	22	24	1.99
14122943--14123165	119	1.9	120	84	6	301	25	28	22	24	1.99
14124295--14124414	56	2.1	56	98	0	231	22	23	9	45	1.81
14130673--14130818	40	3.7	40	75	12	140	26	27	20	26	1.99
14135256--14135299	21	2.1	21	83	8	54	77	9	0	13	0.99
14141113--14141224	55	2.0	56	98	1	217	37	14	7	41	1.73
14141659--14141699	21	2.0	21	100	0	82	31	0	0	68	0.90
14142083--14142122	20	1.9	22	90	10	66	60	2	0	37	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14153761--14153959	39	5.1	39	98	0	380	20	24	31	24	1.98
14161352--14161405	15	3.3	15	79	18	63	44	0	0	55	0.99
14161353--14161405	17	3.0	19	71	21	60	43	0	0	56	0.99
14161438--14161478	14	2.8	15	82	14	50	41	4	0	53	1.22
14168202--14168239	3	12.7	3	100	0	76	34	0	0	65	0.93
14169817--14169894	20	3.7	21	70	11	52	44	1	1	52	1.17
14174557--14174582	13	2.0	13	100	0	52	30	23	0	46	1.53
14175458--14175499	2	21.0	2	95	0	75	0	47	0	52	1.00
14181620--14181681	30	2.1	30	100	0	124	53	19	9	17	1.71
14182110--14182221	27	4.2	26	84	5	125	39	21	22	16	1.92
14182110--14182221	54	2.1	54	84	3	145	39	21	22	16	1.92
14183760--14183861	26	3.9	26	97	0	177	36	25	5	32	1.80
14188590--14188634	23	2.0	23	100	0	90	42	17	17	22	1.89
14203184--14203328	27	5.4	27	89	3	195	34	18	21	25	1.96
14203184--14203328	53	2.7	54	87	4	204	34	18	21	25	1.96
14203979--14204030	27	2.0	26	88	3	77	15	26	23	34	1.94
14203960--14204099	67	2.1	68	87	2	201	18	27	23	30	1.98
14220882--14220991	6	17.8	6	71	15	73	49	13	18	19	1.80
14220882--14220991	31	3.4	31	77	14	121	49	13	18	19	1.80
14220882--14220969	37	2.4	37	86	0	131	47	13	19	19	1.82
14220870--14220991	37	3.5	37	74	13	121	50	12	18	19	1.78
14221494--14221849	27	13.2	27	83	1	390	40	7	22	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14221494--14221849	81	4.4	81	84	2	446	40	7	22	30	1.81
14221802--14221995	27	7.2	28	86	5	181	29	8	21	40	1.82
14221977--14222059	27	3.1	27	91	0	121	28	21	18	31	1.97
14239133--14239159	13	2.1	13	100	0	54	14	33	37	14	1.88
14242974--14243089	58	2.0	58	96	0	214	35	23	20	20	1.96
14252612--14252756	27	5.4	27	89	3	195	34	18	21	25	1.96
14252612--14252756	53	2.7	54	87	4	204	34	18	21	25	1.96
14253407--14253458	27	2.0	26	88	3	77	15	26	23	34	1.94
14253388--14253527	67	2.1	68	87	2	201	18	27	23	30	1.98
14261441--14261500	30	2.0	30	90	0	93	30	25	5	40	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167