genome.fa.s23.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  162  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53754032--53754083	24	2.2	24	86	3	70	36	0	1	61	1.07
53754075--53754111	19	1.9	19	89	10	58	51	0	0	48	1.00
53754668--53754707	21	1.9	21	100	0	80	10	30	5	55	1.54
53756761--53756827	22	3.0	23	73	16	70	35	8	5	49	1.59
53756752--53756821	21	3.3	21	75	11	79	35	10	7	47	1.65
53757751--53757834	18	4.7	18	93	0	150	35	11	10	41	1.77
53758263--53758717	72	6.3	72	95	0	752	22	5	16	55	1.62
53758570--53758675	26	4.3	26	65	29	70	22	1	16	59	1.46
53760294--53760352	19	3.1	19	90	7	84	55	0	0	44	0.99
53760513--53760563	13	3.9	13	76	0	57	33	23	7	35	1.84
53777190--53777265	37	2.1	36	85	9	100	42	0	5	52	1.24
53778292--53778325	13	2.6	13	95	0	59	32	26	20	20	1.97
53789265--53789302	18	2.1	19	90	5	60	52	5	21	21	1.66
53794500--53794652	76	2.0	76	93	0	261	38	14	16	30	1.88
53795111--53795174	31	2.1	31	100	0	128	46	12	15	25	1.81
53795534--53795597	23	2.8	23	85	4	85	23	28	4	43	1.73
53799228--53799288	23	2.7	23	79	5	61	24	27	4	42	1.75
53802133--53802172	20	2.0	20	90	0	62	40	12	17	30	1.86
53810541--53810584	21	2.1	21	100	0	88	25	27	13	34	1.93
53815711--53815752	20	2.1	20	90	0	66	40	11	16	30	1.85
53815761--53815791	15	2.1	15	93	0	53	22	9	25	41	1.84
53815966--53816011	23	2.0	23	91	0	74	10	28	28	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53818731--53818812	41	2.0	41	87	0	119	24	26	17	31	1.97
53819403--53819442	21	2.0	21	90	5	64	52	2	0	45	1.14
53820179--53820565	212	1.8	212	91	1	641	40	14	8	37	1.75
53826925--53826978	25	2.2	25	83	6	65	50	3	3	42	1.38
53827024--53827137	57	2.0	57	98	0	219	41	14	5	39	1.68
53830819--53831055	49	4.7	49	77	7	183	23	27	20	29	1.99
53832754--53832784	8	3.9	8	91	0	53	41	0	6	51	1.27
53832750--53832788	16	2.4	16	100	0	78	46	0	5	48	1.24
53833080--53833126	14	3.3	14	82	8	51	68	0	0	31	0.90
53834579--53834620	22	1.9	22	95	0	75	52	7	0	40	1.29
53834351--53834781	233	1.8	234	92	2	733	54	9	4	32	1.51
53834832--53834878	24	2.0	24	100	0	94	8	8	38	44	1.65
53844578--53844903	162	2.0	162	96	1	600	32	11	20	34	1.89
53846322--53846364	21	2.2	21	84	12	56	4	25	2	67	1.22
53846622--53846669	14	3.4	14	80	11	53	66	0	0	33	0.92
53846727--53846760	17	2.0	17	100	0	68	52	11	5	29	1.61
53848448--53848480	12	2.8	12	95	0	57	66	6	0	27	1.15
53848471--53848520	18	2.8	17	82	8	64	58	0	10	32	1.31
53855978--53856348	105	3.6	104	93	1	602	19	19	29	30	1.97
53858078--53858159	41	2.0	41	97	0	155	32	14	15	36	1.89
53858625--53858854	76	3.0	76	98	0	442	40	13	15	30	1.85
53859201--53859247	23	2.0	23	95	0	85	38	14	4	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53860902--53860932	2	15.5	2	100	0	62	51	0	0	48	1.00
53883247--53883322	23	3.3	23	94	0	134	21	19	26	32	1.97
53887291--53887523	50	4.6	50	85	4	290	28	16	26	29	1.97
53896991--53897131	70	2.0	70	98	0	273	43	11	21	22	1.84
53898253--53898406	76	2.0	76	92	2	256	40	12	14	31	1.85
53898867--53898927	31	2.0	31	96	0	113	49	9	14	26	1.75
53910568--53910607	21	2.0	21	95	5	73	57	7	0	35	1.27
53910568--53910639	20	3.7	19	78	14	76	56	9	0	33	1.32
53910683--53910723	9	4.4	9	85	14	57	70	0	2	26	0.99
53910651--53910723	11	7.3	10	73	15	55	67	1	2	28	1.13
53923027--53923057	3	10.3	3	100	0	62	67	0	0	32	0.91
53923289--53923328	21	1.9	21	89	0	62	62	2	0	35	1.09
53936633--53936693	31	2.0	30	93	0	95	19	3	29	45	1.66
53947936--53947987	21	2.5	21	87	0	68	48	28	1	21	1.61
53948031--53948076	20	2.3	20	85	14	60	32	28	13	26	1.93
53948965--53949014	25	2.0	25	88	0	73	26	8	40	26	1.83
53948990--53949722	228	3.2	228	87	2	1127	31	16	27	24	1.96
53949759--53949798	21	1.9	21	84	0	53	40	2	37	20	1.66
53952098--53952174	33	2.3	33	97	0	145	19	18	15	46	1.84
53960900--53960969	27	2.5	29	90	6	110	40	10	1	48	1.45
53960972--53961017	8	5.8	8	80	14	51	86	6	2	4	0.75
53960971--53961013	16	2.4	18	88	11	63	86	6	2	4	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53961046--53961151	27	3.9	27	91	0	149	25	27	31	16	1.96
53961438--53961565	3	42.7	3	100	0	256	33	0	0	66	0.92
53961538--53961688	63	2.5	62	80	10	159	34	0	10	54	1.35
53961571--53961688	63	1.9	62	84	10	161	33	0	11	54	1.37
53962303--53962347	18	2.5	18	88	0	72	28	4	48	17	1.66
53965208--53965275	27	2.5	27	95	0	118	19	27	26	26	1.99
53965208--53965286	27	2.9	27	88	7	108	16	27	26	29	1.97
53965341--53965397	26	2.2	25	87	9	87	50	0	7	42	1.29
53973200--53973264	33	2.0	33	96	0	121	32	23	18	26	1.97
53975776--53976228	223	2.0	223	99	0	897	25	21	16	36	1.94
53982024--53982055	16	2.0	16	100	0	64	62	12	6	18	1.50
53982100--53982145	23	2.0	23	91	0	74	34	26	26	13	1.92
53983022--53983099	39	2.0	39	97	0	147	44	20	8	25	1.80
53988761--53988792	16	2.0	16	100	0	64	43	12	31	12	1.80
53991646--53991703	21	2.8	20	76	10	62	44	27	5	22	1.74
53991720--53991770	23	2.4	20	87	12	75	35	33	9	21	1.86
53993692--53993748	29	2.0	29	89	0	87	45	8	17	28	1.78
53994664--53995890	228	5.5	226	86	3	1621	30	16	27	25	1.97
53994712--53996172	450	3.3	446	88	4	2014	30	16	27	25	1.97
53995682--53996094	204	2.0	204	86	0	567	30	14	28	26	1.95
53997761--53998315	278	2.0	278	94	0	984	33	13	23	29	1.92
54002849--54003251	200	2.0	200	99	0	788	26	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54006750--54006933	40	4.6	41	81	12	190	25	26	22	26	2.00
54006750--54006933	79	2.3	81	82	13	215	25	26	22	26	2.00
54011310--54011388	39	2.0	39	100	0	158	34	25	20	20	1.96
54014736--54014958	79	2.8	78	82	9	247	24	26	22	26	2.00
54014736--54014958	39	5.7	40	85	8	257	24	26	22	26	2.00
54022724--54022922	39	5.1	39	88	3	267	26	27	20	25	1.99
54030797--54030879	41	2.0	41	97	0	157	26	18	16	38	1.92
54043270--54043346	21	3.6	21	87	5	102	23	29	32	14	1.94
54044502--54044540	20	1.9	21	84	5	53	53	7	7	30	1.57
54057808--54057851	22	2.0	22	100	0	88	40	4	18	36	1.71
54060319--54060814	46	10.8	46	93	1	861	27	28	24	19	1.98
54060787--54060957	92	1.8	94	94	2	310	28	27	20	23	1.99
54060787--54060957	47	3.7	47	96	3	310	28	27	20	23	1.99
54063336--54063424	30	3.0	30	79	11	94	57	14	16	11	1.65
54063336--54063415	15	5.4	15	80	7	92	58	13	17	10	1.62
54063347--54063424	15	5.2	14	75	9	57	56	14	16	12	1.68
54065525--54065678	77	2.0	77	93	0	263	40	20	7	31	1.81
54066066--54066536	46	10.2	46	93	1	802	26	28	25	19	1.98
54066516--54066681	47	3.5	47	100	0	332	27	27	19	24	1.99
54069301--54069404	34	3.1	33	80	1	109	27	21	25	25	1.99
54078825--54078861	9	4.1	9	89	0	56	45	24	10	18	1.81
54086600--54086635	18	2.0	18	88	0	54	66	0	5	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54089407--54089439	11	2.8	12	86	13	50	27	9	6	57	1.53
54103517--54103909	49	8.1	49	93	1	650	31	8	31	29	1.87
54103517--54103909	145	2.7	145	93	0	660	31	8	31	29	1.87
54104030--54104108	37	2.1	37	88	0	113	24	17	31	26	1.97
54115832--54115891	30	2.0	30	93	0	102	30	25	6	38	1.81
54121146--54121279	59	2.2	60	81	9	148	49	5	9	35	1.58
54121167--54121299	59	2.2	59	80	6	153	45	6	9	38	1.62
54125208--54125248	3	13.7	3	100	0	82	31	0	0	68	0.90
54132928--54132979	22	2.2	24	83	12	65	30	1	5	61	1.30
54134217--54134244	6	4.7	6	100	0	56	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167