genome.fa.s23.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  110  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36688585--36688762	27	6.6	27	84	3	205	29	28	15	26	1.96
36688606--36688761	82	1.9	81	88	3	233	29	28	15	26	1.96
36691816--36691872	30	1.9	30	92	0	96	33	14	24	28	1.94
36694608--36694775	45	3.7	45	75	15	143	27	19	29	23	1.98
36703720--36703770	26	1.9	26	84	4	66	52	7	5	33	1.54
36704032--36704146	57	2.0	57	98	0	221	40	17	13	29	1.87
36704198--36704248	18	2.9	18	81	16	63	35	0	15	49	1.45
36704268--36704305	12	3.2	12	92	0	58	34	5	13	47	1.65
36712287--36712409	40	3.1	39	84	4	165	31	25	17	25	1.97
36713696--36713974	138	2.0	137	86	2	389	44	6	9	39	1.61
36716346--36716561	92	2.4	91	78	6	213	27	28	16	27	1.97
36716385--36716556	46	3.7	47	76	5	170	24	27	18	29	1.98
36723019--36723054	14	2.5	14	90	4	54	30	2	0	66	1.06
36723074--36723121	17	2.5	20	83	12	66	29	0	2	68	1.01
36723025--36723129	18	5.5	18	73	16	86	33	0	1	63	1.11
36723024--36723194	86	2.0	85	80	12	190	33	1	2	61	1.19
36723148--36723189	22	1.9	22	85	9	59	33	2	0	64	1.07
36729292--36729655	47	7.7	47	94	0	602	31	8	31	28	1.87
36729774--36729926	37	4.1	37	92	0	243	21	18	32	27	1.96
36739619--36739648	4	7.5	4	100	0	60	26	0	23	50	1.50
36744888--36744941	25	2.2	25	82	0	63	25	20	20	33	1.97
36745120--36745336	27	8.0	27	88	0	290	22	21	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36745326--36745546	81	2.7	81	84	2	275	30	8	20	39	1.83
36745339--36745546	27	7.7	27	84	0	245	31	8	19	39	1.82
36745541--36745732	27	7.1	27	86	0	240	42	7	20	29	1.79
36753440--36753483	23	1.9	23	81	9	54	31	4	15	47	1.66
36755972--36756084	38	2.9	38	89	2	154	22	24	27	25	2.00
36755988--36756095	38	2.8	38	91	0	162	20	24	27	27	1.99
36756088--36756199	43	2.6	43	100	0	224	9	26	33	29	1.89
36761380--36761466	38	2.3	38	97	0	165	19	22	25	32	1.98
36761451--36761478	13	2.2	13	100	0	56	21	14	28	35	1.92
36761413--36761519	53	2.1	51	87	3	151	21	19	27	31	1.97
36761464--36761594	38	3.4	39	81	6	142	23	19	26	30	1.98
36761587--36761668	43	1.9	43	89	0	128	13	25	32	28	1.93
36767255--36767280	8	3.2	8	100	0	52	76	0	0	23	0.78
36831991--36832028	19	2.0	20	85	15	53	36	0	23	39	1.55
36833971--36834161	40	4.8	40	80	3	190	23	23	27	25	2.00
36833968--36834161	80	2.5	77	79	7	210	24	22	27	25	2.00
36841024--36841201	27	6.6	27	84	3	205	29	28	15	26	1.96
36841045--36841200	82	1.9	81	88	3	233	29	28	15	26	1.96
36845316--36845506	40	4.8	40	88	2	260	23	24	29	23	1.99
36853825--36853997	46	3.7	46	77	10	199	21	19	27	31	1.98
36853822--36853992	93	1.8	93	92	0	288	21	19	28	30	1.98
36854222--36854259	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36856781--36857017	60	4.0	60	100	0	474	33	13	5	48	1.64
36856824--36856979	30	5.2	30	61	27	80	32	13	4	50	1.62
36858684--36858725	20	2.1	20	90	0	66	45	9	0	45	1.36
36867652--36867689	17	2.2	17	90	0	58	36	18	13	31	1.89
36871159--36871328	67	2.5	67	89	0	241	18	25	21	33	1.97
36871159--36871361	67	3.0	67	85	2	199	19	25	21	33	1.97
36874509--36874546	17	2.2	17	90	0	58	36	18	13	31	1.89
36883056--36883102	22	2.1	22	84	7	60	42	6	17	34	1.74
36891700--36891831	39	3.4	39	83	0	165	29	18	27	25	1.98
36891702--36891861	78	2.1	77	81	5	180	30	18	26	24	1.98
36900965--36901184	40	5.6	40	80	7	218	24	23	26	25	2.00
36900965--36901146	80	2.3	80	87	3	251	24	23	26	24	2.00
36901411--36901454	22	2.0	22	82	8	54	31	11	13	43	1.80
36906664--36906883	40	5.5	39	79	10	191	25	23	25	25	2.00
36906664--36906847	80	2.3	80	86	3	246	25	23	26	24	2.00
36907110--36907153	22	2.0	22	82	8	54	31	11	13	43	1.80
36917922--36918050	39	3.3	39	86	0	177	31	19	25	23	1.98
36917924--36918083	78	2.1	77	83	3	196	31	19	25	23	1.98
36923551--36923638	18	4.2	20	74	14	63	72	2	6	18	1.17
36925586--36925616	16	1.9	16	100	0	62	6	19	22	51	1.69
36928822--36928882	30	2.0	30	83	0	77	31	22	8	37	1.84
36941409--36941510	29	3.6	29	80	7	111	23	30	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36943005--36943036	16	2.0	16	93	0	55	9	0	31	59	1.29
36943120--36943227	44	2.5	44	79	13	141	23	18	27	30	1.98
36945548--36945578	14	2.2	14	94	0	53	83	3	12	0	0.75
36946592--36947003	43	9.5	43	79	4	389	24	15	21	38	1.92
36947362--36947390	12	2.5	12	94	5	51	68	10	0	20	1.18
36949015--36949044	14	2.2	13	94	5	51	33	0	13	53	1.40
36954491--36954537	12	3.9	12	80	0	58	10	10	2	76	1.10
36959634--36959699	30	2.3	28	78	14	71	22	25	28	22	1.99
36959639--36959696	30	1.9	30	82	6	73	22	24	29	24	1.99
36961271--36961312	19	2.2	19	91	0	66	14	26	33	26	1.94
36963844--36963917	33	2.3	33	88	6	107	39	17	22	20	1.92
36974142--36974255	28	4.1	28	80	3	122	27	14	30	27	1.95
36974142--36974251	56	2.0	56	85	3	150	26	15	31	26	1.96
36975208--36975266	29	2.0	29	100	0	118	27	10	20	42	1.84
36975219--36975268	15	3.4	15	68	15	50	24	12	16	48	1.79
36976587--36976626	21	2.0	20	85	5	53	30	0	22	47	1.52
36976655--36976717	29	2.3	27	83	10	74	41	0	26	31	1.56
36977106--36977136	11	2.8	11	100	0	62	25	19	25	29	1.99
36979589--36979708	46	2.6	46	83	2	141	29	18	28	24	1.98
36979592--36979901	49	6.5	49	74	9	207	26	19	29	24	1.98
36979592--36979850	142	1.8	138	83	6	342	27	19	28	24	1.99
36993341--36993385	21	2.0	23	87	8	67	0	22	6	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36999909--37000132	40	5.6	40	91	1	308	24	20	28	26	1.99
36999870--37000132	80	3.3	80	85	3	318	23	20	28	26	1.99
36999870--37000132	120	2.2	120	82	4	318	23	20	28	26	1.99
37009308--37009393	45	1.9	45	85	4	120	27	13	20	37	1.91
37013846--37013884	19	2.0	20	90	5	62	61	0	20	17	1.34
37015059--37015111	28	2.0	27	85	14	74	60	1	9	28	1.38
37016104--37016142	16	2.4	16	87	8	53	76	0	2	20	0.90
37016784--37016999	49	4.5	49	77	6	160	28	19	27	24	1.99
37018927--37018973	22	2.1	22	92	0	76	19	31	21	27	1.97
37020046--37020106	28	2.2	29	80	14	74	49	8	8	34	1.62
37020099--37020141	21	2.0	21	86	8	61	25	4	11	58	1.52
37022041--37022088	22	2.1	23	84	3	62	31	0	14	54	1.41
37024063--37024183	42	2.9	40	81	7	125	28	12	26	33	1.92
37025020--37025099	42	2.0	42	82	9	103	17	18	36	27	1.94
37031051--37031096	21	2.2	21	100	0	92	30	21	21	26	1.99
37031051--37031107	21	2.7	21	91	2	69	29	24	19	26	1.98
37033672--37033783	43	2.6	42	82	8	129	30	16	24	29	1.96
37036255--37036362	26	4.2	26	93	0	189	32	7	24	36	1.83
37041210--37041257	24	2.0	24	100	0	96	25	16	25	33	1.96
37043050--37043121	26	2.8	26	93	0	126	34	5	25	34	1.79
37043744--37043921	40	4.5	40	88	2	245	23	23	28	24	2.00
37065258--37065286	13	2.2	13	100	0	58	37	24	24	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37072915--37072953	14	2.8	14	96	0	69	56	12	7	23	1.62
37087482--37087519	18	2.1	18	90	0	58	21	5	0	73	1.02
37087489--37087524	18	2.0	18	88	0	54	22	5	0	72	1.05
37087493--37087535	18	2.5	17	82	14	52	18	4	2	74	1.10
37094428--37095453	486	2.1	486	95	0	1838	33	18	19	28	1.95
37097947--37098007	30	2.0	30	83	0	77	29	24	8	37	1.84
37104429--37104476	21	2.3	21	85	0	69	25	31	25	18	1.98
37106633--37106665	16	2.1	16	100	0	66	33	18	12	36	1.88
37115056--37115191	65	2.1	65	92	1	227	25	14	12	47	1.80
37116769--37116813	21	2.1	21	84	8	56	48	8	4	37	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167