genome.fa.s23.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  127  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42578409--42578540	70	1.9	71	83	10	173	41	17	10	30	1.83
42578485--42578618	35	3.8	35	80	13	150	41	20	8	29	1.81
42579537--42579599	31	2.0	31	100	0	126	44	23	6	25	1.77
42594330--42594376	23	2.0	23	100	0	94	40	8	21	29	1.83
42595269--42595473	35	5.9	35	77	6	200	40	20	9	28	1.85
42597545--42597643	50	1.9	52	87	4	148	40	13	14	32	1.84
42601236--42601420	79	2.3	82	83	7	229	24	27	22	24	2.00
42601217--42601420	40	5.1	40	81	8	229	24	27	22	25	2.00
42609244--42609391	47	3.1	47	90	0	233	33	11	29	26	1.91
42609272--42609347	23	3.2	25	62	24	63	28	13	34	23	1.92
42609361--42609547	48	3.8	48	88	8	295	35	6	26	31	1.83
42609362--42609547	100	1.9	96	91	6	302	36	6	26	30	1.83
42609393--42609588	100	2.0	99	84	7	254	34	8	27	29	1.87
42609694--42609802	37	2.9	37	94	0	182	22	19	30	27	1.98
42641196--42641280	44	1.9	44	100	0	170	25	23	12	37	1.91
42652434--42652507	37	2.0	37	89	0	112	20	17	21	40	1.91
42657011--42657117	54	2.0	53	94	0	178	29	15	27	26	1.96
42662623--42662702	40	2.0	40	97	0	151	38	12	26	22	1.90
42664714--42664808	49	1.9	49	95	0	172	32	18	18	29	1.96
42665158--42665245	45	2.0	45	93	0	149	26	18	31	23	1.97
42667916--42668066	43	3.5	42	78	11	130	26	20	25	27	1.99
42672477--42672556	42	1.9	42	84	0	106	25	25	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42675616--42675700	44	2.0	43	83	2	107	38	8	2	50	1.45
42675670--42675701	17	1.9	16	93	6	55	43	0	3	53	1.16
42675836--42675881	5	9.2	5	95	0	83	41	0	0	58	0.98
42679057--42679103	24	2.0	23	91	4	76	6	21	2	70	1.20
42679810--42679861	27	2.0	27	82	14	65	53	5	0	40	1.25
42679984--42680022	19	2.1	19	100	0	78	43	10	25	20	1.83
42686052--42686229	27	6.6	27	81	5	171	28	28	16	26	1.97
42686073--42686228	82	1.9	81	86	3	224	28	28	16	26	1.97
42694253--42694320	29	2.3	29	85	5	93	27	30	13	27	1.94
42694422--42694500	29	2.7	30	82	13	110	29	30	15	25	1.96
42694798--42694883	42	2.0	42	100	0	172	36	22	6	34	1.81
42707536--42707689	28	5.5	28	92	1	238	33	27	12	26	1.92
42710839--42710900	31	2.0	31	96	0	115	33	16	20	29	1.94
42719731--42719772	21	2.0	20	82	13	50	38	21	16	23	1.93
42732921--42732979	31	1.9	31	82	6	75	32	8	18	40	1.81
42733279--42733500	90	2.5	89	84	4	270	38	18	8	35	1.81
42733555--42733609	27	2.1	27	93	3	94	54	0	3	41	1.18
42733565--42733665	9	10.8	9	67	15	53	61	0	3	33	1.21
42733609--42733665	19	3.0	19	76	0	69	63	1	3	31	1.22
42733681--42733763	36	2.3	36	87	6	114	19	15	13	51	1.75
42733770--42733898	59	2.2	60	85	5	172	30	6	3	60	1.36
42733816--42733908	29	3.2	29	73	14	84	29	3	4	63	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42733791--42733929	59	2.4	58	80	8	156	30	5	3	60	1.37
42733962--42734005	20	2.2	20	91	0	70	22	6	6	63	1.43
42734529--42734578	24	2.1	24	96	0	91	28	4	20	48	1.67
42740130--42740313	67	2.9	63	78	7	199	30	17	29	22	1.97
42747284--42747395	48	2.3	48	84	6	138	31	18	23	26	1.98
42747423--42747548	49	2.6	49	83	6	148	28	22	27	21	1.99
42749911--42749969	24	2.5	24	91	5	93	18	35	0	45	1.50
42750485--42750613	64	2.0	64	83	7	165	34	11	3	49	1.57
42750616--42750658	19	2.3	19	84	11	54	23	9	4	62	1.44
42751316--42751347	15	2.1	15	94	0	55	53	6	28	12	1.62
42752367--42752476	42	2.6	42	81	2	123	23	37	18	20	1.94
42754692--42754884	43	4.5	42	82	8	203	33	20	24	22	1.97
42754692--42754884	86	2.3	86	85	4	248	33	20	24	22	1.97
42767854--42767981	55	2.3	55	75	0	130	32	32	21	12	1.91
42769991--42770022	14	2.4	14	90	10	50	18	0	3	78	0.89
42778571--42780563	998	2.0	1000	94	0	3461	33	23	13	29	1.93
42782175--42782217	18	2.4	18	96	0	77	13	34	32	18	1.90
42785987--42786076	45	2.0	45	86	6	128	38	22	18	20	1.93
42786998--42787029	15	2.1	15	94	0	55	31	9	0	59	1.29
42788065--42788201	40	3.4	40	89	1	220	20	23	20	35	1.96
42789878--42790024	72	2.0	72	96	0	267	36	4	6	52	1.47
42792769--42793059	94	3.1	94	79	2	239	23	30	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42792723--42793020	47	6.3	49	72	9	172	21	31	17	28	1.96
42792853--42793235	47	8.3	47	73	11	156	24	29	16	29	1.97
42792876--42793054	92	1.9	93	84	6	238	22	31	16	29	1.96
42792996--42793100	45	2.3	45	85	6	131	25	28	11	34	1.91
42792800--42793115	94	3.4	93	74	8	225	24	30	16	29	1.96
42793136--42793263	44	2.9	43	78	11	134	25	29	16	28	1.97
42796074--42796130	28	2.0	28	83	6	71	38	0	5	56	1.22
42796305--42796348	22	2.0	23	86	4	63	45	6	0	47	1.29
42800298--42800581	50	5.8	50	80	8	307	26	18	29	24	1.98
42800312--42800539	95	2.3	97	83	9	277	27	19	28	24	1.98
42816598--42816672	39	1.9	39	86	5	107	30	25	14	29	1.95
42821348--42821422	32	2.3	32	84	4	98	10	20	36	33	1.87
42822148--42822189	20	2.1	20	86	8	59	28	9	9	52	1.65
42823686--42823723	17	2.2	17	90	4	58	60	7	2	28	1.38
42836868--42837026	44	3.6	44	76	9	164	27	17	23	30	1.97
42843813--42843879	34	1.9	35	87	3	100	29	23	32	13	1.93
42843848--42843908	20	3.1	19	83	7	77	29	21	32	16	1.95
42843870--42843940	20	3.5	22	68	14	62	32	23	30	12	1.92
42843850--42843949	41	2.5	41	84	12	127	31	22	32	15	1.94
42845045--42845230	93	2.0	93	97	0	354	43	16	2	38	1.62
42849980--42850031	19	2.6	20	74	17	54	44	25	17	13	1.85
42849950--42850031	39	2.1	40	82	11	98	41	23	20	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42855410--42855728	46	7.0	47	88	2	366	21	24	15	39	1.91
42855405--42855728	137	2.4	137	85	1	416	21	24	15	39	1.91
42863211--42863248	10	3.9	10	82	3	51	42	0	2	55	1.14
42868683--42869784	576	1.9	575	97	1	2104	37	19	15	27	1.92
42878000--42878054	5	10.4	5	81	18	51	80	0	1	18	0.81
42877997--42878038	13	3.2	13	87	12	59	78	0	0	21	0.75
42877996--42878030	8	4.4	8	89	10	54	74	0	0	25	0.82
42885638--42885719	37	2.2	37	82	0	110	31	1	3	63	1.19
42885706--42885759	19	2.8	19	72	13	56	40	1	1	55	1.21
42889299--42889347	24	2.0	24	96	0	89	51	10	4	34	1.55
42891147--42891185	20	2.0	20	85	10	53	46	2	2	48	1.29
42891289--42891333	19	2.4	19	92	7	74	57	6	0	35	1.25
42895302--42895356	27	2.0	27	100	0	110	7	18	7	67	1.38
42896657--42896716	29	2.1	29	100	0	120	38	13	13	35	1.84
42905524--42905606	41	2.0	41	100	0	166	26	2	28	42	1.68
42907550--42907625	38	2.0	38	97	0	143	27	17	18	36	1.93
42922840--42922933	42	2.3	42	88	1	136	28	5	14	51	1.65
42922853--42922936	42	2.0	42	95	0	150	27	9	14	48	1.74
42927941--42928021	25	3.3	24	75	16	85	30	22	22	24	1.99
42931249--42931350	43	2.4	43	81	3	116	30	16	21	31	1.96
42938396--42938511	43	2.7	44	75	9	130	27	15	25	31	1.96
42941873--42942019	73	2.0	73	95	0	267	34	20	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42942929--42942988	30	2.0	30	90	0	93	28	26	5	40	1.77
42948230--42948271	21	2.0	21	85	0	57	21	16	42	19	1.89
42949730--42949796	34	2.0	34	96	0	125	32	22	22	22	1.98
42950116--42950733	310	2.0	310	98	0	1191	38	18	8	35	1.81
42955292--42955412	46	2.6	46	100	0	242	30	28	20	20	1.98
42955240--42955412	46	3.8	45	87	7	226	30	26	20	23	1.98
42962875--42962960	46	1.9	46	85	4	122	32	29	17	20	1.96
42964808--42964971	25	6.7	24	71	19	108	19	25	19	35	1.95
42964807--42964965	49	3.2	50	78	9	139	18	25	20	35	1.95
42964884--42965016	50	2.6	51	80	8	148	24	26	18	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167