genome.fa.s23.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  25  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7362402--7363816	254	5.6	254	93	3	2202	28	15	20	35	1.93
7362402--7363816	381	3.7	381	92	3	2202	28	15	20	35	1.93
7363459--7363643	72	2.6	71	87	3	255	30	15	18	35	1.93
7363718--7363869	72	2.1	72	82	4	182	32	15	17	35	1.90
7364539--7364572	17	2.0	17	100	0	68	52	41	0	5	1.25
7364976--7365009	3	11.0	3	87	6	50	32	0	0	67	0.91
7364976--7365011	13	2.8	13	91	4	56	33	0	0	66	0.92
7367140--7367165	7	3.7	7	100	0	52	42	0	11	46	1.40
7367707--7367756	25	1.9	25	84	8	64	46	2	0	52	1.12
7368562--7368631	33	2.2	31	87	7	97	47	7	14	31	1.71
7372540--7372585	23	2.0	23	91	0	74	43	0	21	34	1.53
7372527--7372590	23	2.6	26	73	14	71	35	0	23	40	1.55
7373061--7373132	25	2.9	25	93	0	117	56	1	20	20	1.49
7375868--7375966	30	3.3	30	92	0	162	25	49	6	19	1.71
7376423--7376482	22	2.6	23	80	17	63	31	3	3	61	1.28
7376488--7376560	25	2.8	26	79	10	87	35	6	4	53	1.47
7376500--7376564	14	4.6	14	75	19	55	36	4	1	56	1.29
7376580--7376642	25	2.5	24	84	7	72	30	4	6	58	1.43
7388934--7388978	13	3.4	13	81	6	63	13	11	8	66	1.44
7388882--7389439	99	5.6	99	95	0	947	23	17	20	38	1.93
7389465--7390208	73	10.0	73	83	6	897	31	16	19	32	1.94
7389445--7390208	371	2.1	371	91	2	1221	31	16	19	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7390187--7390219	14	2.4	14	94	0	57	18	12	6	63	1.48
7390109--7390376	90	2.9	91	82	7	303	28	17	16	36	1.92
7390109--7390588	87	5.2	87	74	14	349	27	16	16	39	1.90
7390287--7390477	103	1.8	104	89	4	305	27	15	17	39	1.90
7390415--7390613	87	2.3	87	83	4	231	30	15	18	35	1.92
7391679--7391730	18	2.8	18	85	2	77	5	0	42	51	1.25
7393645--7393712	25	2.9	24	80	6	68	57	5	5	30	1.46
7394340--7394408	30	2.3	30	97	0	129	15	5	50	27	1.67
7394934--7394975	21	2.0	21	90	0	66	28	28	9	33	1.88
7395435--7395467	14	2.4	14	94	0	57	63	6	12	18	1.48
7395090--7395632	182	3.0	176	79	10	555	37	17	16	27	1.92
7395127--7395632	273	1.9	265	82	7	626	36	17	16	28	1.92
7395053--7395632	91	6.5	89	79	8	488	37	17	16	28	1.91
7395538--7396142	73	8.3	75	83	6	724	33	19	15	30	1.93
7395538--7396137	217	2.7	216	87	5	805	33	20	15	31	1.94
7395538--7396142	148	4.1	147	85	4	730	33	19	15	30	1.93
7396312--7396358	13	3.5	13	77	5	58	65	4	10	19	1.39
7396133--7396424	100	2.9	101	86	3	376	39	17	17	25	1.91
7396327--7396500	90	2.0	87	85	3	231	36	18	18	25	1.94
7407588--7407629	16	2.7	15	76	20	50	57	2	7	33	1.39
7407920--7407962	11	3.9	11	81	0	50	60	4	0	34	1.17
7408489--7408523	11	3.1	12	88	12	56	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7408623--7408674	14	3.7	14	78	14	54	23	0	3	73	1.00
7408725--7408763	17	2.3	17	86	8	53	71	0	10	17	1.12
7409931--7410941	72	13.7	72	87	5	1217	34	19	15	30	1.93
7409931--7411158	223	5.5	220	87	6	1421	33	19	15	31	1.93
7410948--7411158	77	2.8	75	85	7	279	30	19	16	33	1.94
7410788--7411105	165	2.0	160	86	4	440	34	19	15	29	1.93
7410710--7411246	238	2.3	233	86	3	727	34	19	15	30	1.93
7411349--7411393	13	3.4	13	81	6	54	66	6	11	15	1.42
7411177--7411465	100	2.9	101	88	2	404	39	19	16	23	1.92
7411373--7411540	73	2.3	74	88	3	250	33	20	17	28	1.95
7427012--7427050	16	2.4	16	86	0	51	43	28	5	23	1.75
7427208--7427303	30	3.2	30	93	0	165	17	7	48	26	1.73
7427243--7427296	18	3.3	18	66	28	57	18	7	50	24	1.72
7430397--7430917	84	6.2	84	90	1	796	36	22	22	18	1.95
7430872--7430956	39	2.2	40	93	2	145	38	20	21	20	1.93
7430780--7431026	123	2.0	124	84	3	329	37	21	21	19	1.95
7430982--7431318	88	3.8	86	78	5	307	33	20	23	22	1.97
7430988--7431132	44	3.3	44	67	11	116	34	21	22	22	1.97
7431025--7431176	44	3.5	44	71	12	132	29	21	26	22	1.99
7431664--7431706	21	2.0	21	86	8	61	23	0	4	72	1.04
7431798--7431880	35	2.5	33	82	7	96	22	16	7	53	1.68
7432318--7432360	12	3.3	12	87	9	50	27	6	0	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7432301--7432348	15	3.1	15	90	6	69	29	8	0	62	1.24
7432400--7432554	3	51.7	3	74	12	122	30	6	0	61	1.25
7433885--7433947	30	2.1	30	93	0	108	25	3	14	57	1.52
7435162--7435213	25	2.1	25	100	0	104	40	26	7	25	1.82
7435382--7435455	36	2.1	35	82	10	87	48	0	1	50	1.09
7435820--7435889	30	2.3	29	90	7	97	32	2	10	54	1.48
7435831--7435893	30	2.1	30	100	0	126	34	3	6	55	1.41
7436246--7436303	26	2.2	26	93	0	98	34	5	24	36	1.78
7439584--7439617	5	6.6	5	93	6	59	79	0	0	20	0.73
7439766--7439817	24	2.2	24	89	0	77	50	9	3	36	1.54
7443982--7444023	13	2.9	14	83	13	50	76	0	0	23	0.79
7444170--7444221	24	2.2	24	89	0	77	46	9	7	36	1.66
7447476--7447537	30	2.1	30	93	0	106	33	11	19	35	1.87
7447830--7447872	22	1.9	23	85	4	61	44	2	0	53	1.13
7449718--7449890	93	1.9	93	93	0	301	28	28	20	22	1.98
7449711--7449886	46	3.8	46	77	15	191	29	28	19	22	1.98
7449940--7450040	50	2.0	50	90	0	157	26	29	13	29	1.94
7453067--7453168	52	2.0	52	100	0	204	19	8	32	39	1.83
7453763--7454271	186	2.7	185	84	3	637	26	20	17	35	1.94
7458782--7458857	38	2.0	38	100	0	152	34	26	15	23	1.95
7462865--7463034	40	4.3	40	85	1	207	23	21	30	24	1.99
7462887--7463069	79	2.3	80	80	1	208	25	21	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7466360--7466410	25	2.1	24	82	10	59	52	19	5	21	1.66
7467332--7467403	30	2.4	30	79	11	76	31	11	5	51	1.60
7468563--7468645	41	2.0	41	100	0	166	49	7	16	26	1.72
7471392--7471423	15	2.1	15	100	0	64	18	12	46	21	1.82
7488692--7488900	53	3.9	53	84	5	249	21	24	17	35	1.95
7488928--7489042	47	2.4	47	80	12	119	18	23	22	35	1.95
7490388--7490413	12	2.2	12	100	0	52	50	7	0	42	1.31
7490861--7490956	27	3.4	28	84	2	104	29	13	25	32	1.94
7490889--7490971	27	3.0	27	84	5	87	32	10	22	33	1.89
7492555--7492639	44	1.9	44	83	4	109	25	24	12	36	1.92
7497276--7497313	14	2.9	13	81	11	51	57	10	13	18	1.63
7503728--7503765	14	2.9	13	81	11	51	57	10	13	18	1.63
7505774--7505826	26	2.0	27	88	3	81	37	22	24	15	1.92
7505985--7506049	22	3.0	21	73	13	60	35	23	21	20	1.96
7506505--7506789	27	10.9	27	82	11	317	24	21	20	34	1.96
7506500--7506789	54	5.5	54	83	8	350	23	21	20	34	1.97
7506718--7506759	19	2.2	19	95	0	75	26	21	23	28	1.99
7506693--7506786	46	2.0	46	89	4	145	25	21	20	32	1.97
7506786--7506951	27	6.1	27	80	2	172	31	6	19	42	1.77
7506786--7506951	54	3.1	54	86	0	242	31	6	19	42	1.77
7508975--7509103	27	4.8	27	85	3	152	36	20	23	19	1.95
7509262--7509323	22	2.8	23	78	11	67	35	22	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7514887--7514940	27	2.0	27	88	0	81	27	18	12	40	1.87
7537556--7537725	40	4.3	40	90	2	254	25	28	20	25	1.99
7537556--7537780	80	2.8	80	83	5	242	26	27	21	24	1.99
7537558--7537780	119	1.9	120	81	6	274	26	27	21	25	1.99
7538730--7538961	56	4.1	56	99	0	446	22	22	9	45	1.80
7541643--7541693	26	2.0	26	100	0	102	43	3	23	29	1.72
7542233--7542266	17	1.9	18	94	5	61	52	2	5	38	1.41
7543713--7543742	12	2.5	12	94	0	51	40	23	10	26	1.86
7551566--7551625	29	2.0	30	90	6	95	18	8	25	48	1.75
7551736--7551761	8	3.2	8	100	0	52	11	0	0	88	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167