genome.fa.s23.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  55  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17031447--17031622	46	3.8	45	81	10	212	21	21	29	28	1.98
17031443--17031614	93	1.8	93	94	0	308	20	21	30	27	1.98
17034547--17034626	15	5.4	15	77	7	83	10	18	13	57	1.64
17034538--17034625	30	3.0	30	80	11	92	10	18	15	55	1.68
17037011--17037269	46	5.6	46	83	4	297	22	21	28	27	1.99
17037007--17037269	93	2.8	94	85	5	338	22	21	28	26	1.99
17050838--17051057	48	4.7	48	82	7	254	30	25	17	26	1.97
17050846--17051057	91	2.3	93	82	5	250	30	25	17	26	1.97
17058663--17058742	40	2.0	40	97	0	151	41	17	12	28	1.86
17059042--17059249	77	2.7	77	87	1	310	31	27	20	19	1.97
17065218--17065288	24	2.8	25	83	8	83	23	23	18	33	1.96
17067873--17067958	43	2.0	43	83	0	109	27	30	20	20	1.98
17076181--17076266	40	2.2	39	87	2	118	25	22	25	26	2.00
17092938--17092994	28	2.0	28	100	0	114	38	10	8	42	1.71
17101130--17101276	42	3.5	41	77	8	143	19	18	31	30	1.96
17101205--17101289	43	2.0	43	95	0	152	18	20	31	29	1.96
17103710--17103737	13	2.2	13	100	0	56	60	0	0	39	0.97
17108474--17109102	47	13.2	47	90	2	943	31	7	30	30	1.86
17108474--17109102	143	4.4	141	91	2	970	31	7	30	30	1.86
17109220--17109298	37	2.1	37	90	0	122	24	18	31	25	1.98
17114988--17115059	31	2.3	31	87	0	108	29	9	5	55	1.55
17116472--17116528	26	2.1	27	83	3	71	33	22	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17119399--17119703	38	8.0	38	88	5	427	30	25	22	22	1.99
17119399--17119703	76	4.0	76	93	0	484	30	25	22	22	1.99
17125743--17125870	28	4.5	28	88	2	175	28	12	25	32	1.92
17125743--17125870	57	2.2	57	88	2	186	28	12	25	32	1.92
17145864--17145900	9	4.1	9	85	0	56	32	10	10	45	1.74
17145946--17145980	9	3.9	9	92	0	61	40	22	11	25	1.88
17145940--17145982	18	2.3	18	96	4	77	34	20	13	30	1.92
17146358--17146457	41	2.4	41	96	0	182	32	27	20	21	1.97
17167229--17167431	40	5.1	40	93	3	320	28	26	21	23	1.99
17175327--17175492	40	4.2	40	93	0	280	27	27	22	22	1.99
17184053--17184176	47	2.6	47	81	10	133	23	27	18	30	1.98
17184197--17184364	46	3.6	46	77	12	182	23	29	19	27	1.98
17184197--17184367	94	1.8	92	85	7	238	23	29	19	26	1.99
17196302--17196430	46	2.8	46	90	2	197	20	20	28	31	1.97
17202409--17202565	41	3.6	44	78	13	157	25	17	28	29	1.97
17205720--17205904	79	2.3	80	83	8	234	26	28	22	23	1.99
17205720--17205904	40	4.7	40	82	7	225	26	28	22	23	1.99
17213329--17213522	47	4.1	47	89	0	280	33	10	28	26	1.90
17213729--17213837	37	2.9	37	95	0	191	22	19	31	26	1.98
17221319--17221454	56	2.4	56	97	0	254	27	15	25	30	1.96
17224582--17224641	30	2.0	30	83	6	77	38	6	26	28	1.81
17224831--17224888	19	3.2	19	68	22	61	36	1	10	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17225215--17225465	49	5.0	50	79	3	238	25	18	26	29	1.98
17230542--17230599	19	3.2	19	68	22	61	36	1	10	51	1.46
17230545--17230611	35	1.9	35	93	0	116	34	1	13	50	1.51
17245951--17245988	18	2.2	17	90	4	58	26	0	2	71	1.00
17247697--17247744	8	6.1	8	80	4	62	16	14	8	60	1.57
17247693--17247727	16	2.2	16	100	0	70	17	11	5	65	1.43
17247697--17247744	23	2.0	24	92	4	80	16	14	8	60	1.57
17248398--17248621	46	4.8	46	78	11	172	25	18	31	24	1.98
17248397--17248621	47	4.8	48	77	11	164	24	18	32	24	1.97
17254170--17254195	13	2.0	13	100	0	52	46	7	30	15	1.74
17258937--17259152	46	4.6	46	77	8	181	25	18	30	24	1.98
17264354--17264427	28	2.6	29	82	2	96	28	27	14	29	1.95
17264354--17264444	29	3.2	29	80	6	98	27	27	15	29	1.96
17264667--17264697	16	1.9	16	93	0	53	16	16	16	51	1.77
17267524--17267703	28	6.6	27	91	3	279	30	28	12	27	1.93
17267524--17267703	55	3.3	55	94	1	299	30	28	12	27	1.93
17267524--17267703	83	2.2	82	92	1	297	30	28	12	27	1.93
17275718--17275785	29	2.3	29	85	5	93	27	30	13	27	1.94
17275607--17275934	174	1.9	174	97	0	620	30	24	14	29	1.95
17275887--17275965	29	2.7	29	76	13	81	26	31	16	25	1.96
17277176--17277276	51	2.0	50	98	1	193	25	17	19	36	1.94
17285221--17285292	35	2.1	35	86	5	101	37	11	25	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17290486--17290557	35	2.1	35	92	5	119	37	12	23	26	1.90
17292205--17292396	25	7.7	25	75	4	145	39	26	15	19	1.91
17292206--17292367	50	3.2	50	87	6	215	39	26	16	17	1.91
17292205--17292396	75	2.6	75	78	1	170	39	26	15	19	1.91
17292206--17292396	50	3.8	49	85	6	176	39	26	15	19	1.91
17292616--17292688	26	2.8	25	83	6	85	28	19	19	32	1.96
17292672--17292805	26	5.1	26	83	3	144	27	14	20	38	1.91
17292646--17292754	52	2.1	52	82	3	130	26	17	18	37	1.93
17296422--17296494	28	2.7	26	75	12	67	38	21	8	31	1.83
17296443--17296658	80	2.7	80	82	5	240	37	21	9	31	1.85
17296414--17296653	80	3.0	80	79	6	209	38	22	9	30	1.85
17296422--17296705	27	10.6	27	74	11	210	38	21	9	31	1.85
17296690--17297025	27	12.6	27	83	2	403	36	19	20	23	1.95
17296697--17297159	54	8.5	54	80	9	483	36	18	20	23	1.95
17296690--17297160	81	5.8	81	80	11	487	36	18	20	24	1.95
17296690--17297156	80	5.7	81	79	12	474	36	18	20	24	1.94
17297024--17297160	27	5.1	26	79	7	148	36	18	19	25	1.94
17297302--17297332	16	1.9	16	93	0	53	29	19	16	35	1.93
17297810--17297889	26	3.0	26	81	3	97	16	21	22	40	1.91
17297817--17297889	27	2.8	26	81	4	92	17	21	20	39	1.92
17303970--17304133	41	3.9	42	73	4	125	31	24	13	31	1.93
17320369--17320478	27	4.1	27	81	6	134	39	18	16	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17320790--17321154	73	5.0	73	97	0	667	20	28	23	28	1.99
17321211--17321267	8	7.1	8	75	0	60	10	26	12	50	1.72
17321203--17321271	24	2.9	24	81	10	88	10	24	11	53	1.68
17322185--17322210	10	2.6	10	100	0	52	42	23	0	34	1.54
17336278--17336326	20	2.4	21	76	10	57	24	38	14	22	1.91
17337859--17338065	46	4.4	47	77	7	181	29	18	27	24	1.98
17339475--17339587	41	2.7	40	79	8	102	26	16	27	29	1.97
17340363--17340404	19	2.3	19	83	4	50	21	7	35	35	1.81
17340773--17340839	20	3.3	20	68	19	59	35	1	14	47	1.54
17361194--17361313	60	2.0	60	98	0	231	35	30	13	20	1.91
17373670--17374010	170	2.0	171	95	0	621	36	20	19	23	1.95
17374497--17374584	45	2.0	45	86	0	122	35	25	15	23	1.95
17395659--17395825	48	3.5	48	82	0	210	27	25	17	29	1.98
17399381--17399517	60	2.3	59	80	12	145	26	26	20	27	1.99
17404441--17404577	60	2.3	59	81	8	143	26	26	19	27	1.99
17406493--17406521	15	1.9	15	100	0	58	58	0	0	41	0.98
17409895--17410035	40	3.5	40	91	2	214	25	27	23	23	2.00
17417359--17417575	40	5.4	40	85	4	271	25	27	23	23	2.00
17420174--17420222	23	2.1	23	92	0	80	36	14	12	36	1.83
17422397--17422434	18	2.1	18	100	0	76	78	0	0	21	0.74
17422395--17422432	9	4.1	9	83	16	51	76	0	0	23	0.79
17430856--17431133	48	6.0	48	75	10	224	28	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17430954--17431133	96	1.9	96	87	2	263	28	23	19	28	1.98
17437029--17437071	22	2.0	22	81	9	52	46	9	30	13	1.75
17447695--17447722	12	2.3	12	100	0	56	7	0	42	50	1.30
17448411--17448542	38	3.4	38	75	10	115	24	20	23	31	1.98
17452987--17453014	12	2.3	12	100	0	56	7	0	42	50	1.30
17463755--17463885	46	2.8	46	88	0	199	21	21	27	29	1.98
17468883--17468998	9	12.7	9	75	12	103	39	1	14	43	1.56
17468901--17469012	56	2.0	56	92	0	188	39	1	13	45	1.54
17469179--17469926	91	8.3	90	83	8	873	51	6	7	33	1.56
17469180--17469926	182	4.2	182	92	5	1259	51	6	7	33	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167