genome.fa.s23.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  155  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51064348--51064412	11	5.8	12	79	15	68	23	32	1	43	1.63
51065297--51065321	6	4.2	6	100	0	50	36	48	16	0	1.46
51068478--51068545	31	2.3	31	84	5	95	30	13	13	42	1.82
51072240--51072279	21	1.9	21	85	10	55	35	2	2	60	1.24
51073459--51073502	18	2.6	18	85	7	56	54	4	0	40	1.21
51075411--51075470	26	2.3	26	83	11	77	66	3	0	30	1.07
51075411--51075470	17	3.4	17	72	20	52	66	3	0	30	1.07
51075776--51075826	25	2.0	25	96	0	93	29	29	11	29	1.92
51080054--51080080	13	2.1	13	100	0	54	40	0	0	59	0.98
51087068--51087121	24	2.3	24	81	9	58	55	9	20	14	1.66
51088127--51088188	32	2.0	31	84	9	81	33	3	1	61	1.22
51099366--51099564	108	1.8	108	86	0	290	26	15	8	49	1.73
51100363--51101127	43	17.7	43	77	5	558	31	20	21	26	1.98
51100363--51101001	175	3.7	173	80	6	583	31	20	21	26	1.98
51100750--51101127	175	2.2	169	89	4	569	30	21	21	26	1.98
51102746--51102807	32	2.0	31	84	9	81	33	3	1	61	1.22
51109002--51109097	31	3.2	31	67	5	88	32	10	11	45	1.74
51109025--51109118	29	3.2	29	70	5	89	31	8	10	48	1.68
51109003--51109121	60	2.0	60	94	0	211	31	9	10	47	1.70
51112489--51112600	44	2.5	44	78	4	118	33	18	24	23	1.97
51112826--51112990	34	4.9	34	82	3	152	42	13	12	32	1.81
51112817--51112999	68	2.7	68	77	3	188	42	12	12	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51118039--51118077	19	2.2	19	86	9	55	56	2	2	38	1.27
51119690--51119736	3	15.7	3	100	0	94	68	0	31	0	0.90
51120555--51120633	25	3.2	24	75	7	77	20	25	18	35	1.95
51120555--51120657	50	2.1	49	85	5	136	20	25	19	34	1.96
51123556--51123584	13	2.3	13	94	5	51	58	0	10	31	1.31
51138884--51138924	22	2.0	22	90	9	68	43	2	0	53	1.13
51143680--51143727	25	1.9	25	86	0	69	25	27	14	33	1.94
51143811--51143916	25	4.3	25	72	18	71	18	26	19	34	1.95
51143910--51144005	49	1.9	50	82	2	122	18	25	20	35	1.95
51143872--51144014	25	5.8	25	81	6	125	18	25	20	34	1.96
51150119--51151436	659	2.0	659	100	0	2636	33	14	23	28	1.94
51151272--51152632	681	2.0	680	100	0	2713	32	10	21	35	1.88
51156899--51156934	16	2.2	16	95	0	63	27	0	33	38	1.57
51159578--51159619	15	2.7	16	82	14	52	52	2	0	45	1.13
51159587--51159628	15	2.9	15	82	10	52	52	0	0	47	1.00
51162817--51162868	9	5.8	9	95	0	95	36	30	9	23	1.87
51169988--51170031	22	2.0	21	82	4	52	47	0	11	40	1.39
51171020--51171084	19	3.3	20	73	16	64	36	3	0	60	1.13
51171422--51171474	19	2.5	21	82	14	65	47	3	0	49	1.19
51180137--51180280	44	3.3	42	76	12	123	26	23	18	31	1.97
51180343--51180923	44	12.9	44	67	14	211	29	20	17	33	1.95
51180172--51180815	271	2.4	271	81	7	790	28	20	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51180613--51180728	45	2.6	43	82	8	126	27	19	15	37	1.92
51180388--51180922	227	2.4	227	84	2	675	28	20	17	33	1.95
51181691--51181885	104	1.9	104	89	2	302	46	8	16	28	1.77
51194184--51194218	14	2.4	15	90	4	54	11	8	37	42	1.72
51194430--51194463	17	2.0	17	94	0	59	26	23	8	41	1.83
51197698--51197747	25	1.9	27	88	8	77	50	2	8	40	1.43
51207274--51207346	26	2.8	26	83	2	94	17	26	21	34	1.96
51209548--51209636	25	3.6	25	76	11	92	31	20	28	20	1.97
51209542--51209643	50	2.0	51	82	1	125	32	20	27	19	1.97
51209670--51209767	50	2.0	50	80	8	110	37	23	21	17	1.94
51209663--51209767	25	4.2	25	68	14	65	38	23	21	16	1.93
51209760--51209831	25	3.0	24	81	6	83	34	26	25	13	1.93
51209753--51209839	25	3.5	24	75	10	79	35	25	24	14	1.94
51221211--51221262	24	2.2	24	89	0	77	55	9	1	32	1.43
51223181--51223232	24	2.2	24	89	0	77	55	9	1	32	1.43
51232886--51232955	3	23.7	3	83	13	92	62	1	2	32	1.18
51234324--51234619	129	2.2	129	82	5	349	27	20	19	31	1.97
51235207--51235261	23	2.4	23	87	6	76	41	20	7	30	1.79
51237549--51237977	88	4.8	89	80	8	449	28	23	18	28	1.98
51237549--51237977	186	2.4	176	87	5	565	28	23	18	28	1.98
51237752--51237977	44	5.1	44	61	12	113	27	22	22	28	1.99
51237956--51237999	22	2.0	22	100	0	88	27	27	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51237868--51238087	110	2.0	110	92	0	368	27	23	21	27	1.99
51237780--51238175	198	2.0	198	89	1	614	28	23	20	27	1.99
51237978--51238189	88	2.4	88	88	0	316	30	23	19	27	1.98
51240183--51240306	46	2.8	46	91	3	200	27	22	16	33	1.96
51240183--51240380	37	4.8	45	84	10	207	26	21	16	35	1.94
51240269--51240407	37	3.8	37	95	0	233	25	21	13	38	1.90
51247842--51247965	46	2.8	46	91	3	200	27	22	16	33	1.96
51247842--51248076	37	5.8	45	87	8	207	26	21	15	36	1.93
51247927--51248103	37	4.8	37	95	0	300	26	20	13	38	1.90
51252552--51252599	15	3.2	15	71	11	53	25	22	8	43	1.81
51253944--51253972	14	2.0	15	93	6	51	13	6	20	58	1.58
51254462--51254527	31	2.2	31	83	8	82	43	10	15	30	1.80
51257626--51257659	17	1.9	18	88	5	52	38	5	0	55	1.24
51278998--51279085	25	3.5	25	96	0	158	29	30	13	26	1.94
51295941--51296004	31	2.1	31	96	0	119	43	18	10	26	1.83
51296790--51296816	13	2.1	13	100	0	54	29	7	7	55	1.55
51304185--51304240	25	2.2	26	90	3	87	58	0	0	41	0.98
51329499--51329540	21	2.0	21	95	0	75	35	14	40	9	1.78
51332906--51333065	60	2.7	60	86	2	214	20	29	14	35	1.92
51333025--51333123	51	1.9	51	91	0	162	20	33	11	35	1.88
51339514--51339579	30	2.2	30	83	8	80	50	3	0	46	1.16
51343354--51343832	175	2.7	174	89	1	744	28	21	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51343573--51343819	44	5.6	44	71	11	175	28	21	20	29	1.98
51345144--51345180	11	3.5	11	92	3	58	0	0	8	91	0.41
51352632--51352675	22	2.0	22	95	0	79	27	20	27	25	1.99
51358842--51358888	19	2.5	20	75	10	53	57	2	0	40	1.11
51366230--51366255	12	2.2	12	100	0	52	53	7	23	15	1.67
51369804--51369854	4	12.8	4	85	10	61	23	0	1	74	0.92
51369804--51369869	23	3.0	22	78	8	71	25	1	1	71	1.04
51382367--51382406	21	1.9	21	84	0	53	45	5	5	45	1.47
51390102--51390192	40	2.3	38	81	7	128	35	34	17	13	1.89
51390114--51390190	40	1.9	40	97	0	145	36	35	15	12	1.86
51397123--51397201	40	2.0	40	89	0	122	37	32	15	13	1.87
51397903--51398013	56	2.0	56	89	0	168	27	24	16	31	1.96
51399307--51399454	23	6.6	22	75	10	113	41	35	4	18	1.69
51399324--51399431	48	2.4	43	84	9	128	41	37	3	17	1.67
51405389--51405544	42	3.7	42	77	16	169	30	26	18	24	1.98
51407002--51407086	32	2.7	32	96	1	154	34	3	0	62	1.12
51407003--51407087	16	5.4	16	74	12	86	32	3	0	63	1.11
51407050--51407094	24	1.9	23	86	4	63	33	4	0	62	1.15
51407010--51407089	9	8.8	9	70	22	60	33	2	0	63	1.08
51413766--51413882	58	2.0	58	100	0	234	30	3	48	17	1.63
51416775--51416975	63	3.2	63	80	6	178	25	29	22	22	1.99
51417467--51417523	6	9.8	6	81	14	57	77	0	22	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51417467--51417523	16	3.7	16	81	4	73	77	0	22	0	0.77
51417470--51417520	3	16.7	3	76	11	50	74	0	25	0	0.82
51418465--51418560	28	3.3	29	79	10	88	25	6	1	67	1.20
51420585--51420742	79	2.0	78	88	3	237	29	22	30	17	1.96
51421304--51421342	17	2.4	16	86	4	51	33	2	0	64	1.08
51421730--51421778	22	2.2	22	85	3	62	24	10	2	63	1.37
51421736--51421778	22	1.9	23	90	4	70	27	9	0	62	1.25
51425421--51425466	19	2.4	18	82	10	56	32	19	8	39	1.82
51434886--51434929	21	2.1	21	83	8	54	29	25	20	25	1.99
51439555--51439658	26	4.0	26	91	0	163	36	23	6	33	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167