genome.fa.s23.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  134  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44855563--44855607	14	3.2	14	81	12	65	48	26	0	24	1.51
44855880--44855985	7	15.1	7	74	3	88	38	40	0	20	1.53
44866766--44867755	44	22.6	44	82	3	948	32	14	25	28	1.94
44866766--44867754	88	11.3	88	85	1	1083	32	14	25	28	1.94
44866766--44867754	132	7.5	131	84	2	1058	32	14	25	28	1.94
44868655--44868820	83	2.0	83	96	0	305	21	24	34	19	1.96
44876603--44876633	14	2.1	15	94	5	55	38	0	3	58	1.15
44879000--44879043	22	2.0	22	90	0	70	54	4	0	40	1.21
44881581--44881766	80	2.3	80	89	0	273	28	16	22	32	1.95
44881581--44881768	40	4.7	40	85	0	241	28	16	22	32	1.96
44883106--44883158	26	2.0	27	85	7	74	24	15	22	37	1.92
44884648--44884705	26	2.2	26	93	0	98	36	24	5	34	1.78
44888122--44888179	27	2.1	27	96	0	107	34	17	17	31	1.93
44889790--44889888	36	2.7	37	81	4	112	35	20	2	42	1.64
44894426--44894483	17	3.6	17	73	15	52	60	0	1	37	1.07
44894776--44894999	3	72.3	3	64	25	51	61	1	3	33	1.22
44894734--44894998	59	4.4	59	75	16	201	61	1	4	33	1.24
44894779--44894899	13	9.8	12	68	23	56	61	1	2	33	1.19
44894727--44895063	20	17.3	19	66	21	107	62	1	4	32	1.25
44894781--44894999	49	4.5	46	73	17	119	61	1	3	33	1.22
44894736--44894995	58	4.3	57	70	19	149	61	1	4	33	1.25
44894733--44894999	17	15.2	17	67	23	87	61	1	4	32	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44894829--44894999	27	6.2	27	69	22	99	61	1	3	33	1.23
44894847--44894989	14	9.8	15	65	24	56	60	1	4	34	1.25
44895335--44895362	9	3.1	9	100	0	56	21	57	21	0	1.41
44899035--44899115	32	2.5	32	86	4	110	30	1	16	51	1.52
44903585--44903630	21	2.3	19	88	7	65	73	8	0	17	1.07
44904256--44904301	11	4.3	11	73	15	51	17	0	2	80	0.81
44904434--44904485	5	10.0	5	80	12	52	17	0	1	80	0.80
44904437--44904485	11	4.7	10	80	7	53	16	0	2	81	0.78
44904437--44904482	16	2.9	16	87	9	67	15	0	2	82	0.76
44904245--44904606	181	2.0	181	99	0	715	26	8	11	52	1.67
44905048--44905175	3	43.3	3	71	3	62	28	9	4	57	1.50
44905019--44905167	15	9.7	15	68	8	57	27	10	5	57	1.53
44905316--44905354	15	2.6	14	88	8	51	28	12	0	58	1.34
44905266--44905311	20	2.3	20	88	7	67	23	4	0	71	1.03
44907102--44907146	19	2.3	20	81	7	58	24	22	11	42	1.86
44909060--44909096	19	1.9	19	94	0	65	18	10	2	67	1.32
44911958--44912265	134	2.3	134	90	1	474	31	17	24	26	1.97
44912417--44912633	89	2.4	88	75	6	211	33	21	19	25	1.97
44913027--44913061	5	7.0	5	87	12	54	20	0	0	80	0.72
44913027--44913057	14	2.1	15	94	5	55	19	0	0	80	0.71
44913565--44913727	3	54.3	3	69	10	66	27	5	6	60	1.43
44913817--44913862	20	2.3	19	85	10	65	23	4	0	71	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44918791--44918897	43	2.5	43	86	4	135	31	27	24	16	1.96
44919766--44920116	40	8.7	40	87	1	497	32	27	17	22	1.96
44919766--44920114	80	4.3	80	96	1	619	32	27	17	22	1.96
44920891--44920918	12	2.3	12	100	0	56	32	7	0	60	1.24
44924586--44924628	19	2.1	21	87	8	63	44	2	0	53	1.13
44942929--44942984	22	2.6	21	76	18	60	58	3	7	30	1.42
44943042--44943066	13	1.9	13	100	0	50	84	0	0	16	0.63
44943217--44943415	61	3.4	60	81	12	252	62	4	9	23	1.42
44943283--44943474	100	1.9	102	83	8	255	60	4	10	24	1.48
44943278--44943494	52	4.2	52	81	9	232	60	4	10	24	1.46
44943278--44943494	100	2.1	102	77	11	228	60	4	10	24	1.46
44944592--44944618	11	2.5	11	100	0	54	11	40	40	7	1.69
44972301--44972372	21	3.4	21	77	7	83	13	15	18	52	1.74
44972236--44972366	42	3.1	42	79	1	154	13	19	16	49	1.79
44974451--44974577	44	2.8	45	83	4	148	33	14	24	28	1.94
44983343--44983464	62	2.0	62	90	0	190	36	22	11	29	1.89
44984757--44984929	43	4.0	43	76	6	172	30	25	16	28	1.96
44986895--44986938	21	2.1	21	100	0	88	38	25	4	31	1.76
44987540--44987692	42	3.6	42	84	6	168	28	23	16	32	1.96
44989772--44989812	19	2.1	20	95	4	75	26	4	4	63	1.35
44990367--44990406	9	4.4	9	84	12	55	77	0	22	0	0.77
44993444--44993511	28	2.4	27	88	7	100	25	4	2	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44993450--44993531	28	3.5	23	79	17	73	25	3	2	68	1.18
44994643--44994822	96	1.9	97	83	8	242	28	13	25	32	1.94
44995493--44995531	20	2.0	20	85	10	53	25	5	2	66	1.25
44998025--44998955	101	9.3	101	97	0	1712	26	16	27	29	1.97
44998915--44999023	42	2.6	41	88	2	146	32	13	23	30	1.94
44998927--44999037	42	2.6	42	88	2	152	31	14	25	28	1.95
45001484--45001532	18	2.8	18	81	9	57	44	2	26	26	1.65
45002831--45002922	48	1.9	48	97	0	175	43	7	25	23	1.80
45013681--45013734	19	2.8	19	97	0	99	38	22	0	38	1.54
45013825--45013906	24	3.4	24	81	8	103	36	21	29	12	1.90
45013790--45013920	25	5.3	24	76	12	106	34	20	29	16	1.94
45025720--45025796	39	2.0	38	97	2	145	23	5	25	45	1.73
45028091--45028377	93	3.1	93	80	6	312	21	20	15	42	1.89
45028315--45028392	41	1.9	41	89	0	120	17	26	15	39	1.90
45029572--45029628	30	1.9	29	86	10	80	49	5	0	45	1.24
45031545--45031615	3	22.3	3	72	11	52	59	4	4	32	1.36
45032830--45032866	18	2.1	18	90	5	58	5	0	16	78	0.93
45033161--45033343	94	2.0	93	86	3	262	29	20	18	31	1.96
45033161--45033389	94	2.5	93	82	5	248	27	20	18	34	1.96
45033261--45033547	138	2.1	138	80	2	317	25	21	19	33	1.97
45033171--45033624	232	2.0	229	82	3	545	27	20	18	33	1.96
45033400--45034498	94	11.7	94	82	2	1114	28	19	19	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45037810--45037912	52	2.0	52	84	7	138	28	17	25	29	1.97
45037806--45037933	52	2.6	47	77	14	134	28	17	25	28	1.97
45043204--45043274	3	22.3	3	72	11	52	59	4	4	32	1.36
45043252--45043309	21	2.9	19	80	17	64	56	0	10	32	1.33
45044595--45044867	43	6.3	43	81	2	289	28	27	17	26	1.97
45057613--45057710	42	2.4	41	84	1	115	24	12	17	45	1.82
45057872--45057967	8	11.9	8	81	14	101	34	0	3	62	1.11
45057865--45057941	15	5.1	15	84	4	102	36	0	1	62	1.04
45057860--45057940	7	11.0	7	85	7	81	39	0	1	59	1.05
45057860--45057940	37	2.2	37	86	4	110	39	0	1	59	1.05
45058950--45058993	17	2.8	16	82	6	54	6	0	15	77	0.97
45069410--45069469	30	2.0	30	96	0	111	16	13	28	41	1.86
45071856--45071970	42	2.7	42	85	6	153	26	27	14	30	1.95
45072042--45072252	31	6.8	31	93	0	314	26	25	20	27	1.99
45072228--45072356	50	2.5	51	88	5	190	25	21	16	36	1.94
45092615--45092639	12	2.1	12	100	0	50	32	44	16	8	1.76
45110322--45110358	12	3.1	12	88	0	56	51	10	13	24	1.73
45112441--45112490	8	6.4	8	80	13	59	38	0	0	62	0.96
45112450--45112490	5	8.0	5	84	15	57	41	0	0	58	0.98
45112428--45112490	16	4.0	16	81	8	67	34	1	1	61	1.15
45128996--45129126	40	3.2	41	92	3	221	33	28	9	28	1.89
45132657--45132707	16	3.1	16	80	2	57	37	21	9	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45133459--45133489	16	1.9	16	93	0	53	48	16	19	16	1.81
45143425--45143465	20	2.0	20	95	0	73	29	9	24	36	1.87
45146563--45146632	14	4.9	13	73	25	54	27	7	1	64	1.28
45158679--45158785	54	2.0	54	90	3	171	41	23	23	12	1.88
45165100--45165253	36	4.3	36	82	4	152	12	11	36	38	1.80
45166043--45166098	20	2.8	20	88	0	76	48	0	30	21	1.51
45168828--45168852	13	1.9	13	100	0	50	40	24	16	20	1.91
45168720--45168945	113	2.0	114	96	0	418	29	19	14	36	1.91
45169338--45169381	22	2.0	22	95	0	79	22	4	34	38	1.75
45173944--45174013	24	2.9	24	89	0	104	34	32	11	21	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167