genome.fa.s23.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  148  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48903856--48903895	21	1.9	21	94	0	71	22	20	27	30	1.98
48915352--48915417	6	11.3	6	90	6	91	18	3	0	78	0.87
48915358--48915429	17	4.2	17	85	3	81	18	6	0	75	1.02
48915357--48915424	23	3.0	23	85	12	95	17	5	0	76	0.98
48919087--48919144	20	2.9	20	92	0	98	20	34	31	13	1.92
48923092--48923915	412	2.0	412	99	0	1639	32	13	22	31	1.93
48924820--48924844	12	2.1	12	100	0	50	44	0	0	56	0.99
48925966--48926132	53	3.5	45	76	14	147	26	15	28	29	1.96
48926888--48926947	20	2.9	20	80	9	75	20	36	31	11	1.88
48932051--48932087	9	4.0	9	92	3	56	40	13	13	32	1.84
48932127--48932163	18	2.1	18	89	0	56	51	13	8	27	1.69
48938166--48938311	53	2.7	53	90	4	213	29	28	15	26	1.96
48940958--48940984	14	1.9	14	100	0	54	44	11	0	44	1.39
48941303--48941532	125	1.8	125	83	1	309	35	16	16	31	1.91
48942227--48942289	3	21.3	3	77	9	67	66	0	3	30	1.07
48942435--48942572	3	47.0	3	75	17	87	64	1	2	31	1.14
48942484--48942572	17	5.4	17	80	12	98	64	0	2	33	1.06
48942510--48942572	22	3.0	21	88	11	94	65	0	0	34	0.93
48942511--48942583	31	2.3	29	78	19	76	64	0	0	35	0.94
48943960--48944679	358	2.0	359	99	0	1424	30	20	16	32	1.95
48949430--48949470	21	2.0	21	86	13	59	56	0	2	41	1.13
48952245--48952320	40	1.9	40	86	0	107	32	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48952247--48952337	40	2.3	40	80	0	101	34	19	17	28	1.95
48952870--48953045	7	24.7	7	71	7	50	23	1	28	46	1.60
48952869--48952902	14	2.4	14	95	0	59	20	0	32	47	1.51
48952926--48952955	15	2.0	15	93	0	51	26	0	30	43	1.55
48952921--48952974	22	2.5	21	74	14	56	25	0	24	50	1.50
48954655--48954717	31	2.0	31	100	0	126	34	12	15	36	1.86
48955317--48955439	39	3.2	39	82	1	140	26	30	21	21	1.98
48956958--48957124	41	4.1	41	86	4	169	39	21	20	17	1.92
48957281--48957424	7	19.4	7	69	11	63	25	1	27	45	1.62
48957296--48957435	46	3.0	46	95	0	253	27	2	27	42	1.67
48957765--48958064	74	4.0	74	92	3	503	51	10	11	26	1.70
48957766--48958062	149	2.0	148	95	0	531	51	10	11	26	1.70
48958194--48958237	18	2.4	18	85	7	54	22	40	0	36	1.54
48962427--48962507	43	1.9	42	84	2	108	25	23	23	27	2.00
48965350--48965393	22	2.0	21	91	4	70	59	0	0	40	0.98
48966129--48966175	24	2.0	24	83	8	60	46	6	0	46	1.28
48969542--48969618	39	2.0	39	97	2	147	42	5	20	31	1.74
48971181--48971241	28	2.2	28	94	2	106	36	22	13	27	1.92
48982242--48982277	18	2.0	18	88	0	54	50	22	16	11	1.77
48984033--48984077	22	2.0	22	83	8	56	37	15	13	33	1.86
48988842--48988886	15	2.9	15	86	3	63	17	15	13	53	1.73
48991891--48992077	46	4.1	46	86	1	232	22	24	13	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48994596--48994835	49	4.8	49	82	3	291	27	18	25	29	1.98
48996155--48996188	6	5.8	6	86	6	52	85	0	2	11	0.71
48999328--48999382	24	2.3	24	82	14	62	29	21	0	49	1.50
49002052--49002095	23	1.9	23	81	9	54	40	9	9	40	1.68
49018515--49018633	58	2.0	59	93	1	204	31	22	18	27	1.97
49021808--49021862	26	2.1	27	82	3	67	18	9	9	63	1.49
49023445--49023484	21	1.9	21	100	0	80	27	35	15	22	1.94
49025256--49025281	13	2.0	13	100	0	52	15	38	38	7	1.76
49026313--49026337	13	1.9	13	100	0	50	28	0	16	56	1.41
49029692--49029752	30	2.0	30	83	0	77	27	34	24	13	1.93
49029934--49030096	81	2.0	81	90	4	258	24	12	15	47	1.80
49030213--49030401	98	1.9	98	95	0	342	25	11	16	45	1.82
49034213--49034275	16	3.9	16	80	12	76	26	3	0	69	1.03
49034213--49034275	31	2.0	30	82	11	74	26	3	0	69	1.03
49034278--49034320	22	1.9	22	85	4	59	6	9	4	79	1.06
49034347--49034382	18	2.0	18	89	10	56	27	0	8	63	1.23
49034368--49034446	3	26.7	3	75	21	51	22	2	3	70	1.15
49042115--49042179	23	2.8	23	90	0	94	46	36	6	10	1.64
49042328--49042386	24	2.5	24	80	17	63	28	20	0	50	1.48
49044250--49044362	35	3.2	35	83	0	127	16	9	32	40	1.81
49054191--49054278	30	2.9	30	93	3	142	23	32	27	15	1.95
49060091--49060214	62	2.0	62	100	0	248	33	17	14	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49062021--49062045	13	1.9	13	100	0	50	48	8	0	44	1.32
49065407--49065435	8	3.6	8	100	0	58	27	0	34	37	1.57
49067694--49067834	70	2.0	70	92	0	237	41	17	17	23	1.90
49071870--49071894	13	1.9	13	100	0	50	48	8	0	44	1.32
49072012--49072141	63	2.1	63	95	0	233	30	20	13	36	1.91
49080413--49080438	6	4.3	6	100	0	52	19	0	0	80	0.71
49080471--49080518	17	2.7	19	75	12	57	43	0	0	56	0.99
49087334--49087407	19	3.9	19	96	3	141	36	10	16	36	1.83
49087334--49087414	37	2.2	38	91	8	141	37	9	17	35	1.83
49087334--49087430	19	4.8	22	89	7	97	36	9	16	38	1.81
49096100--49096687	220	2.7	220	88	0	879	33	18	20	27	1.96
49096628--49097237	78	7.6	78	86	6	819	33	18	23	24	1.97
49096628--49097291	248	2.7	241	85	6	889	32	18	23	25	1.97
49097531--49097761	78	3.0	78	96	1	419	32	18	24	24	1.97
49097701--49097974	45	6.1	45	77	6	268	31	15	27	25	1.95
49097775--49097974	89	2.2	90	83	3	269	33	14	28	24	1.94
49097701--49097957	134	1.9	136	82	7	326	30	15	27	26	1.96
49098323--49098396	19	3.9	19	96	3	141	36	10	16	36	1.83
49098323--49098403	37	2.2	38	91	8	141	37	9	17	35	1.83
49098323--49098419	19	4.8	22	89	7	97	36	9	16	38	1.81
49098685--49098720	18	2.1	17	89	5	54	27	0	0	72	0.85
49099734--49099775	14	2.9	15	86	10	61	45	7	0	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49099920--49099961	20	2.1	20	100	0	84	16	4	19	59	1.54
49106124--49106174	15	3.4	15	86	5	59	45	0	1	52	1.12
49107439--49107543	51	2.1	51	98	0	201	39	25	16	19	1.91
49108467--49108498	15	2.1	15	94	0	55	15	6	9	68	1.36
49109615--49109666	16	2.8	19	75	24	58	40	1	13	44	1.55
49109627--49109668	16	2.6	16	96	0	75	40	0	11	47	1.40
49119272--49120801	452	3.4	452	99	0	3033	35	15	16	32	1.90
49123058--49123096	6	6.5	6	93	0	69	35	17	43	2	1.63
49134284--49134335	20	2.5	20	84	3	68	46	9	15	28	1.77
49135083--49135144	32	1.9	32	83	9	81	38	0	6	54	1.26
49135559--49135776	92	2.4	93	88	1	314	40	14	11	32	1.83
49136527--49136634	26	4.2	26	92	0	189	30	6	26	36	1.82
49139607--49139656	17	2.8	18	82	11	59	52	6	0	42	1.26
49142794--49142934	27	5.0	27	70	10	93	13	14	28	43	1.83
49142843--49142920	30	2.6	30	86	8	97	12	14	29	43	1.82
49142794--49142934	57	2.5	54	76	10	138	13	14	28	43	1.83
49147982--49148052	29	2.7	25	74	16	70	29	25	25	19	1.99
49147985--49148042	29	2.0	29	93	0	98	29	27	22	20	1.99
49148820--49148852	12	2.8	12	95	0	57	48	27	24	0	1.51
49155707--49156017	138	2.3	133	77	9	340	23	11	12	52	1.71
49158190--49158458	46	5.6	46	83	11	299	35	14	21	28	1.93
49158190--49158458	98	2.7	98	92	0	448	35	14	21	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49158422--49158530	37	3.0	37	90	2	177	35	16	22	24	1.95
49177783--49177828	22	2.1	22	84	8	58	10	21	4	63	1.44
49184276--49184434	79	2.0	79	97	0	300	49	21	7	22	1.74
49185239--49185286	16	3.0	16	96	0	87	39	41	6	12	1.68
49185945--49185976	14	2.1	16	88	11	50	3	40	0	56	1.15
49186415--49186452	3	12.3	3	88	5	58	34	2	2	60	1.24
49194074--49194181	49	2.2	49	91	4	184	26	3	4	64	1.30
49194722--49194779	15	4.1	14	78	10	55	34	0	3	62	1.12
49201825--49201850	9	2.9	9	100	0	52	76	0	0	23	0.78
49203436--49203487	26	2.0	26	92	0	86	36	1	21	40	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167