genome.fa.s23.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  160  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52842144--52842206	21	3.2	21	61	38	50	26	20	11	41	1.86
52842140--52842213	38	1.9	38	100	0	148	27	20	10	41	1.85
52842859--52842888	15	2.0	15	93	0	51	83	3	6	6	0.90
52875200--52875329	45	2.9	45	85	2	165	26	26	21	25	1.99
52883107--52883196	27	3.2	27	79	7	92	31	24	25	18	1.98
52890935--52891024	27	3.2	27	78	10	101	32	24	23	20	1.98
52912772--52912943	43	4.0	44	78	5	181	26	13	26	33	1.94
52914274--52914504	109	2.1	109	92	0	381	19	25	29	25	1.98
52927765--52927982	39	5.5	39	90	1	294	29	27	23	19	1.98
52927760--52927982	117	1.9	119	86	3	326	29	27	24	19	1.98
52931161--52931266	55	1.9	55	84	3	142	25	30	26	17	1.98
52934092--52934274	79	2.3	81	83	7	223	25	28	22	23	1.99
52934090--52934277	40	4.7	40	83	7	222	25	28	22	23	1.99
52938292--52938558	133	2.0	133	97	0	507	34	19	23	22	1.97
52939849--52939915	23	2.8	24	79	4	82	22	20	19	37	1.95
52940077--52940161	39	2.2	39	78	4	91	30	8	21	40	1.82
52942167--52942429	40	6.6	40	85	3	298	25	27	21	25	1.99
52942361--52942438	40	1.9	41	82	10	97	26	28	21	23	1.99
52952451--52952530	38	2.1	38	95	0	142	20	25	26	28	1.99
52952463--52952555	38	2.4	38	89	0	132	20	20	25	33	1.97
52952549--52952662	46	2.6	46	84	8	139	21	25	27	25	2.00
52954764--52954903	48	2.9	48	85	1	181	22	30	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52968545--52968695	43	3.5	43	78	6	119	28	22	19	29	1.98
52976254--52976301	25	1.9	25	91	0	78	35	20	14	29	1.93
52976336--52976407	20	3.7	19	83	10	92	36	12	19	31	1.89
52976452--52976522	26	2.8	26	87	4	110	26	23	21	28	1.99
52982110--52982232	43	2.9	42	75	7	131	31	26	17	24	1.97
52991704--52993128	710	2.0	711	98	0	2773	33	12	18	36	1.87
52993648--52993672	11	2.3	11	100	0	50	28	0	20	52	1.47
52996486--52996636	49	3.1	48	76	11	144	28	15	25	30	1.96
52998777--52998801	13	1.9	13	100	0	50	40	4	16	40	1.67
52999344--52999398	29	2.0	28	82	7	67	40	3	27	29	1.73
53011171--53011408	47	5.1	47	93	0	395	33	11	28	26	1.92
53011171--53011454	94	3.0	94	88	2	401	33	11	28	26	1.91
53011171--53011454	141	2.0	141	86	2	401	33	11	28	26	1.91
53019356--53019447	44	2.1	44	95	0	166	42	15	21	20	1.89
53029360--53029441	42	2.0	42	82	4	103	19	36	26	17	1.94
53036863--53037088	27	8.4	27	80	1	229	25	15	18	39	1.91
53036863--53037088	81	2.8	81	83	1	292	25	15	18	39	1.91
53039717--53039829	42	2.7	42	80	2	104	43	17	22	16	1.88
53057247--53057349	45	2.4	45	85	8	133	25	27	21	26	1.99
53057688--53057885	43	4.6	43	90	0	324	30	33	25	10	1.90
53057676--53057897	86	2.6	86	89	1	331	31	33	23	11	1.90
53057878--53057998	39	3.1	39	86	4	138	28	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53057911--53057998	39	2.2	39	93	2	149	27	28	19	25	1.99
53087733--53087917	79	2.3	81	84	7	236	24	22	27	25	2.00
53087734--53087917	40	4.6	40	83	9	216	24	22	27	25	2.00
53087786--53087950	79	2.1	79	84	6	210	26	21	27	25	1.99
53091927--53092111	41	4.6	41	85	5	225	22	21	28	27	1.99
53091913--53092112	81	2.5	78	81	8	231	22	21	28	27	1.99
53091913--53092138	81	2.8	78	78	11	226	23	20	28	27	1.99
53093948--53094041	48	2.0	48	86	0	134	27	25	20	26	1.99
53106659--53106721	15	4.3	14	73	11	54	57	14	11	17	1.65
53106659--53106716	30	1.9	30	82	0	71	56	15	10	17	1.66
53122575--53122631	28	2.0	28	100	0	114	31	17	12	38	1.87
53128147--53128171	13	1.9	13	100	0	50	20	40	32	8	1.81
53128393--53128419	13	2.1	13	100	0	54	40	14	22	22	1.90
53136069--53136095	13	2.1	13	100	0	54	40	14	22	22	1.90
53137723--53137772	25	2.0	25	100	0	100	40	12	12	36	1.79
53138361--53138405	20	2.2	21	80	11	58	42	13	4	40	1.64
53139806--53139834	3	9.7	3	100	0	58	31	0	0	68	0.89
53142494--53142628	23	5.7	24	75	8	98	17	22	18	40	1.91
53160848--53160889	21	2.0	20	86	4	57	52	16	0	30	1.44
53160992--53161021	12	2.5	12	94	0	51	6	30	40	23	1.80
53164020--53164106	42	2.1	42	100	0	174	31	26	6	35	1.83
53165785--53165829	20	2.2	20	88	0	63	48	2	13	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53167820--53167952	40	3.3	39	75	6	124	27	21	21	30	1.98
53168025--53168119	40	2.4	40	87	0	136	41	24	13	21	1.89
53168354--53168399	21	2.2	21	88	0	65	47	19	2	30	1.61
53168626--53168662	12	3.2	12	88	7	51	43	0	10	45	1.39
53171910--53171949	3	13.3	3	100	0	80	67	0	0	32	0.91
53172057--53172395	187	1.8	188	83	8	458	33	19	17	30	1.95
53175179--53175228	23	2.2	23	100	0	100	34	16	16	34	1.90
53176043--53176170	9	13.6	9	78	9	130	46	20	0	32	1.56
53176060--53176137	39	2.0	39	94	0	138	46	20	0	33	1.51
53176054--53176146	48	1.9	48	88	0	141	45	21	0	33	1.52
53176056--53176168	57	2.0	57	91	0	181	46	22	0	30	1.58
53178003--53178028	12	2.2	12	100	0	52	34	7	26	30	1.85
53182057--53182176	43	2.8	42	80	7	127	37	17	17	27	1.92
53182471--53182550	42	1.9	42	82	5	99	20	26	33	20	1.96
53184274--53186111	917	2.0	918	99	0	3651	31	20	19	28	1.97
53188243--53188650	47	8.6	47	92	2	627	32	8	29	29	1.87
53188243--53188650	96	4.3	94	92	3	627	32	8	29	29	1.87
53196473--53196513	21	2.0	21	85	9	57	29	12	19	39	1.88
53196625--53196755	47	2.8	48	91	1	201	22	16	29	32	1.96
53205012--53205621	305	2.0	305	98	0	1166	37	25	16	19	1.93
53205845--53206186	169	2.0	170	95	0	623	37	20	16	25	1.93
53206385--53206612	114	2.0	114	97	0	429	33	14	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53231398--53231606	28	7.5	28	96	1	359	31	28	13	25	1.94
53238225--53238284	31	1.9	31	96	0	111	41	18	28	11	1.85
53270330--53270379	25	2.0	25	100	0	100	40	12	12	36	1.79
53274860--53274996	23	5.8	24	75	8	102	17	24	18	39	1.92
53289693--53290567	48	18.2	48	86	7	1251	36	5	28	30	1.79
53289696--53290567	96	9.1	96	99	0	1692	36	5	28	30	1.79
53300275--53300312	20	1.9	20	94	0	67	47	5	10	36	1.61
53300274--53300318	20	2.2	20	84	0	63	48	4	11	35	1.59
53302323--53302455	40	3.3	40	68	4	106	27	21	20	30	1.98
53302514--53302622	40	2.8	39	87	8	152	35	20	15	28	1.93
53303129--53303165	12	3.2	12	88	7	51	43	0	10	45	1.39
53304631--53304765	50	2.7	50	80	1	153	28	28	17	25	1.98
53306421--53306455	3	11.7	3	100	0	70	68	0	0	31	0.90
53306565--53306903	187	1.8	188	83	8	458	33	19	17	30	1.95
53309326--53310127	63	12.7	63	100	0	1604	30	17	15	36	1.91
53311290--53311392	43	2.4	43	100	0	206	22	15	35	26	1.94
53311374--53311447	29	2.6	29	91	4	114	27	16	31	25	1.96
53311614--53311953	40	8.5	40	99	0	664	22	20	29	27	1.98
53320754--53320795	18	2.3	18	100	0	84	33	4	19	42	1.72
53321934--53322344	47	8.7	47	97	0	750	32	8	30	29	1.86
53322463--53322541	37	2.1	37	90	0	122	24	18	31	25	1.98
53327432--53327540	42	2.6	42	75	7	112	27	17	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53353479--53353520	15	2.7	16	82	14	52	9	7	14	69	1.37
53356597--53356633	18	2.1	18	89	0	56	35	21	27	16	1.94
53362928--53363073	57	2.5	58	82	9	174	28	15	21	35	1.93
53371233--53371313	39	2.1	39	95	0	144	27	12	16	44	1.83
53376792--53376839	25	1.9	25	86	0	69	33	25	16	25	1.96
53376883--53376941	20	3.0	20	97	0	109	35	11	20	32	1.89
53376887--53376941	11	5.4	11	70	16	55	36	12	20	30	1.90
53376992--53377135	24	6.0	24	86	2	182	27	20	21	30	1.98
53383253--53383551	150	2.0	150	95	0	544	29	13	28	28	1.94
53396867--53396914	25	1.9	25	86	0	69	33	25	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167