genome.fa.s23.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  109  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36183704--36183763	30	2.0	30	83	6	77	41	6	23	28	1.79
36187747--36187799	21	2.5	22	76	11	56	32	18	7	41	1.79
36191790--36191875	42	2.1	41	84	6	111	46	17	22	13	1.83
36192445--36192540	34	2.8	34	77	4	95	19	23	25	31	1.98
36194835--36194978	60	2.4	61	81	8	170	27	27	18	26	1.98
36194966--36195011	20	2.3	20	82	14	60	28	28	17	26	1.98
36196410--36196452	14	3.0	14	86	10	52	72	2	20	4	1.14
36196410--36196469	31	1.9	31	82	0	75	75	1	18	5	1.07
36199298--36199501	56	3.7	56	84	5	249	26	14	24	34	1.93
36199298--36199500	112	1.9	107	85	5	280	26	13	24	34	1.93
36213914--36213973	25	2.4	25	91	0	93	35	20	20	25	1.96
36213900--36213980	25	3.2	25	80	5	92	34	19	23	22	1.96
36216065--36216150	42	2.0	42	84	0	109	33	26	15	24	1.95
36219070--36219106	19	2.0	18	89	5	56	78	2	18	0	0.87
36221014--36221042	13	2.2	13	100	0	58	44	6	13	34	1.71
36224774--36224819	18	2.6	18	86	3	58	21	0	10	67	1.21
36228955--36229026	36	2.0	36	100	0	144	33	8	22	36	1.84
36230099--36230655	275	2.0	275	100	0	1114	28	14	19	37	1.91
36233942--36234067	45	2.8	45	89	2	182	28	28	22	20	1.98
36234060--36234230	38	4.5	38	85	0	225	32	25	20	21	1.97
36234090--36234257	76	2.2	76	84	6	207	32	22	21	23	1.98
36234527--36234644	45	2.7	43	80	6	148	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36234527--36234661	43	3.1	43	80	6	155	29	29	16	24	1.96
36235872--36235950	39	2.0	39	90	0	122	34	22	18	24	1.97
36242715--36242830	50	2.4	47	84	5	144	27	22	14	35	1.93
36248382--36248947	275	2.1	275	99	0	1114	28	14	19	38	1.90
36254059--36254472	48	8.7	48	74	13	304	24	29	18	27	1.98
36254164--36254475	142	2.2	142	98	0	597	24	31	18	26	1.97
36254059--36254472	94	4.4	92	74	11	311	24	29	18	27	1.98
36262410--36262454	21	2.1	21	84	8	56	37	4	8	48	1.55
36264032--36264167	65	2.1	66	92	1	229	47	12	14	25	1.80
36272552--36272587	16	2.2	17	85	14	58	36	11	25	27	1.90
36272558--36272590	16	2.1	16	100	0	66	36	12	18	33	1.88
36274747--36274794	21	2.3	21	85	0	69	18	25	31	25	1.98
36281848--36282099	68	3.9	64	78	10	228	29	16	29	25	1.96
36283905--36284938	486	2.1	485	95	0	1852	28	19	18	33	1.96
36291831--36291884	18	3.1	17	81	10	56	72	1	5	20	1.14
36306413--36306451	14	2.8	14	96	0	69	23	7	12	56	1.62
36314080--36314108	13	2.2	13	100	0	58	13	24	24	37	1.91
36318106--36318224	39	3.1	39	88	0	184	29	21	21	28	1.98
36318714--36319045	172	1.9	172	98	0	646	39	18	7	34	1.80
36322277--36322371	40	2.4	40	90	0	154	26	27	22	24	2.00
36325208--36325319	39	2.9	39	95	0	206	26	25	22	25	2.00
36332504--36332619	43	2.7	43	80	10	155	30	30	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36344271--36344393	28	4.4	28	96	0	228	22	24	39	13	1.91
36345000--36345329	43	7.7	43	84	3	423	28	28	16	25	1.97
36355472--36356065	297	2.0	297	100	0	1188	29	22	14	33	1.93
36357121--36357166	20	2.3	21	82	14	62	26	17	28	28	1.98
36358219--36358252	14	2.4	14	90	0	50	50	2	0	47	1.16
36358413--36358479	29	2.3	28	87	5	89	25	22	13	38	1.90
36358738--36358846	53	2.1	53	84	6	141	25	22	11	39	1.89
36360772--36360955	49	3.7	49	84	2	242	28	26	19	26	1.98
36360773--36360960	100	1.9	100	93	0	322	28	26	19	25	1.99
36362149--36362215	30	2.2	30	89	0	98	28	37	20	13	1.91
36362368--36362406	17	2.2	17	86	13	53	48	15	2	33	1.58
36368291--36368653	46	7.7	46	77	10	271	24	30	19	25	1.98
36382562--36382619	29	2.0	30	93	3	100	31	0	13	55	1.39
36390459--36390509	20	2.6	19	79	11	59	64	1	0	33	1.05
36390457--36390517	29	2.1	28	84	3	77	65	3	0	31	1.09
36400459--36401110	324	2.0	324	99	0	1286	38	21	6	33	1.80
36405703--36405845	72	2.0	72	94	0	250	27	22	13	36	1.92
36413048--36413092	20	2.2	20	88	0	63	40	13	0	46	1.43
36414176--36414218	17	2.4	18	80	3	52	32	9	2	55	1.44
36423750--36423789	19	2.2	19	95	4	73	57	0	15	27	1.38
36426818--36426904	27	3.2	27	98	1	165	43	19	6	29	1.77
36432328--36432363	9	4.0	9	89	10	56	36	0	55	8	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36433697--36433734	20	1.9	20	88	0	58	73	0	0	26	0.83
36436787--36436823	17	2.1	18	90	5	58	10	5	8	75	1.17
36445311--36445488	27	6.6	27	83	5	180	29	28	15	26	1.96
36445332--36445487	82	1.9	81	86	3	224	28	28	16	26	1.97
36451390--36451458	24	2.9	24	93	0	120	34	1	36	27	1.66
36454102--36454161	24	2.5	24	97	0	111	35	0	36	28	1.58
36454102--36454172	24	3.0	24	89	4	108	36	1	36	25	1.65
36461427--36461510	26	3.2	26	96	0	150	36	25	4	33	1.77
36461826--36461996	85	2.0	85	100	0	342	43	12	19	24	1.86
36466598--36466735	70	2.0	70	94	0	240	36	32	6	24	1.81
36480371--36480795	48	8.8	47	77	5	393	26	27	17	28	1.97
36480371--36480795	96	4.4	96	89	0	598	26	27	17	28	1.97
36480374--36480795	144	2.9	143	79	2	443	26	27	17	28	1.97
36487592--36487692	51	2.0	51	86	0	139	31	28	14	24	1.95
36487661--36487765	43	2.5	43	82	1	131	33	26	17	22	1.96
36511376--36511548	43	4.0	43	77	8	190	32	24	16	26	1.96
36511376--36511532	42	3.7	43	78	7	176	31	24	17	26	1.97
36515586--36515620	18	1.9	18	88	0	52	40	11	25	22	1.88
36515606--36515704	45	2.4	39	72	18	99	39	15	19	26	1.91
36516753--36516813	22	2.9	20	79	11	68	18	4	3	73	1.14
36516896--36517030	68	2.0	68	98	0	261	37	10	2	49	1.49
36517341--36517435	3	32.3	3	74	17	67	58	4	0	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36517403--36517435	5	6.4	5	93	6	57	57	0	0	42	0.98
36533385--36533455	32	2.2	32	97	2	135	40	11	5	42	1.64
36534937--36535063	35	3.6	35	81	5	148	41	31	10	16	1.82
36536396--36536514	59	2.0	59	98	0	229	25	14	25	35	1.93
36545478--36545643	35	4.7	35	87	0	224	39	31	10	18	1.85
36545478--36545667	105	1.8	106	82	3	249	40	31	10	17	1.83
36545479--36545667	35	5.4	34	84	3	198	40	31	10	17	1.83
36546404--36546469	30	2.2	30	86	0	87	22	33	21	22	1.97
36556589--36556617	9	3.2	9	100	0	58	41	34	0	24	1.55
36559752--36560009	130	2.0	130	89	1	401	33	15	19	31	1.93
36562592--36562762	93	1.8	93	94	0	306	28	29	21	21	1.98
36562587--36562759	46	3.7	46	80	13	219	29	28	20	21	1.98
36572921--36573223	151	2.0	151	100	0	606	30	24	11	33	1.90
36578595--36578624	15	1.9	15	93	6	51	40	0	0	60	0.97
36582601--36582664	32	2.0	32	100	0	128	34	21	12	31	1.91
36587329--36587468	75	1.9	75	92	0	235	48	9	12	30	1.71
36587444--36587731	138	2.1	138	87	4	404	39	7	5	47	1.55
36589004--36589147	40	3.6	39	87	1	180	23	16	26	33	1.96
36589004--36589151	80	1.9	80	85	2	208	24	16	26	32	1.96
36592860--36593282	210	2.0	210	100	0	846	32	17	16	33	1.92
36604638--36604687	24	2.1	24	81	7	57	76	4	8	12	1.15
36618262--36618287	12	2.2	12	100	0	52	50	7	0	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36618766--36618942	27	6.5	26	81	3	138	25	15	27	30	1.96
36618793--36618942	55	2.8	54	83	4	167	27	15	28	28	1.96
36618766--36618921	82	1.9	81	83	6	199	26	16	27	30	1.96
36618762--36618942	82	2.2	81	79	4	195	26	16	27	30	1.96
36624850--36624899	25	2.0	25	96	0	91	38	12	8	42	1.71
36637594--36637690	32	3.0	32	100	0	194	24	19	30	24	1.98
36637658--36637788	40	3.3	40	87	3	185	24	20	29	25	1.99
36637658--36637811	79	1.9	79	83	7	197	25	20	27	25	1.99
36680395--36680572	27	6.6	27	84	3	205	29	28	15	26	1.96
36680416--36680571	82	1.9	81	88	3	233	29	28	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167