genome.fa.s23.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  159  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52298216--52298298	43	1.9	43	83	9	107	28	18	21	31	1.97
52299127--52299164	19	2.0	19	100	0	76	31	0	31	36	1.58
52304064--52304118	27	2.0	27	96	0	101	38	5	25	30	1.79
52304111--52304234	55	2.3	55	89	0	194	29	15	22	33	1.95
52323652--52323829	27	6.6	27	83	3	205	26	15	28	29	1.96
52323653--52323808	82	1.9	81	88	3	233	26	15	28	29	1.96
52323649--52323829	82	2.2	81	83	2	229	27	15	27	29	1.96
52333936--52333971	18	1.9	19	88	5	56	44	2	19	33	1.65
52339251--52339404	44	3.6	43	79	9	163	22	17	27	32	1.96
52339250--52339404	43	3.6	43	78	10	156	21	17	27	32	1.96
52344899--52345004	53	2.0	53	98	0	203	29	30	19	20	1.97
52345237--52345361	64	2.0	64	98	0	241	34	29	13	22	1.92
52345532--52345756	79	2.8	78	82	7	247	26	25	21	25	2.00
52345532--52345756	40	5.7	40	83	6	244	26	25	21	25	2.00
52352678--52352939	39	6.7	40	88	7	337	24	27	22	25	2.00
52356772--52356931	43	3.7	42	81	8	171	23	18	26	30	1.98
52358372--52358487	43	2.8	42	79	12	148	32	14	22	30	1.94
52358980--52359098	56	2.1	56	93	1	202	21	13	23	42	1.88
52359115--52359144	14	2.1	14	100	0	60	43	13	6	36	1.70
52363066--52363418	176	2.0	177	96	1	647	31	15	24	28	1.95
52364257--52364387	40	3.3	40	88	2	192	24	20	26	28	1.99
52364257--52364424	40	4.2	38	80	9	158	25	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52367500--52367531	13	2.5	13	94	0	55	6	34	40	18	1.76
52370067--52370099	17	1.9	17	88	11	50	81	18	0	0	0.68
52370679--52370712	17	2.0	17	94	0	59	44	50	0	5	1.26
52371724--52371749	12	2.2	12	100	0	52	26	26	23	23	2.00
52376375--52376407	17	1.9	17	88	11	50	81	18	0	0	0.68
52381085--52381119	14	2.4	14	85	4	52	37	0	0	62	0.95
52381296--52381345	17	3.1	17	88	8	70	36	2	20	42	1.63
52384060--52384100	3	14.7	3	85	10	52	70	0	29	0	0.87
52390110--52390160	21	2.4	21	70	6	50	25	25	23	25	2.00
52391140--52391176	18	2.1	17	90	5	56	48	2	8	40	1.47
52394954--52395082	64	2.0	64	95	0	231	32	31	17	19	1.94
52395936--52396009	25	3.0	25	78	4	78	37	20	21	20	1.94
52408433--52408475	21	2.0	21	95	0	77	27	0	37	34	1.57
52408456--52408488	16	2.1	16	94	0	57	33	0	36	30	1.58
52408467--52408561	45	2.1	44	88	1	136	34	5	27	32	1.79
52416199--52416241	20	2.2	20	82	0	50	9	13	23	53	1.69
52427616--52427683	4	17.5	4	72	22	56	0	19	0	80	0.70
52427615--52427680	12	5.7	11	84	8	87	0	18	0	81	0.68
52427616--52427680	23	2.8	23	97	2	121	0	18	0	81	0.69
52428257--52428383	63	2.0	63	86	3	175	27	18	26	26	1.98
52429095--52429139	22	2.0	22	91	0	72	15	17	17	48	1.81
52429097--52429150	22	2.5	22	81	0	63	20	18	12	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52432889--52432928	20	2.0	20	90	0	62	45	25	0	30	1.54
52433105--52433165	22	2.7	23	73	19	65	36	19	19	24	1.95
52435668--52435832	43	3.8	44	76	13	139	24	18	26	30	1.98
52456967--52456999	16	2.1	16	88	5	50	21	0	0	78	0.75
52465788--52465867	39	2.1	39	97	0	151	38	11	21	28	1.88
52469583--52469717	47	2.9	47	84	5	166	30	29	14	25	1.95
52473505--52473676	40	4.3	40	86	2	204	25	28	20	25	1.99
52473507--52473729	80	2.8	78	80	8	225	25	27	21	25	1.99
52473696--52473906	105	2.0	105	96	0	386	32	25	13	29	1.93
52481408--52481832	40	10.6	40	94	1	735	27	20	27	24	1.99
52522378--52522435	30	1.9	30	85	0	80	13	29	34	22	1.93
52531067--52531117	25	2.0	25	100	0	102	25	31	15	27	1.96
52540485--52540595	29	3.9	28	82	8	127	25	34	15	25	1.95
52546236--52546467	49	4.7	49	83	5	279	29	27	18	25	1.98
52548936--52548980	15	2.9	15	83	3	54	51	13	15	20	1.76
52551784--52552014	49	4.7	49	78	2	237	30	26	17	25	1.97
52553126--52553340	115	1.9	115	87	1	315	39	18	11	30	1.87
52554056--52554621	88	6.3	87	69	14	310	28	20	18	32	1.96
52554330--52554762	182	2.4	183	84	3	529	29	21	17	31	1.96
52553994--52554580	138	4.3	138	79	4	571	29	20	17	32	1.95
52554099--52554621	44	11.6	44	71	14	275	28	20	18	32	1.96
52554493--52554725	44	5.2	44	72	12	170	28	22	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52554496--52554802	138	2.2	138	78	5	325	28	23	17	30	1.97
52558917--52559129	27	7.9	27	80	12	233	34	22	23	18	1.96
52558959--52559129	54	3.2	54	99	0	333	35	24	23	16	1.95
52559233--52559308	26	2.8	27	84	4	91	30	11	22	35	1.90
52560750--52560857	26	4.2	26	93	0	189	36	24	7	32	1.83
52566151--52566255	27	3.9	27	85	7	124	35	21	22	20	1.96
52566359--52566434	28	2.8	27	86	5	100	28	9	23	38	1.86
52567876--52567983	26	4.2	26	93	0	189	36	24	7	32	1.83
52571436--52571482	21	2.4	19	82	10	58	27	2	23	46	1.63
52575635--52575675	20	2.0	20	100	0	82	29	29	9	31	1.89
52580840--52580889	22	2.2	22	79	10	57	42	28	4	26	1.73
52581565--52581692	47	2.7	47	91	0	202	32	30	15	21	1.95
52591270--52591451	46	3.9	47	78	12	180	23	28	19	29	1.98
52591231--52591452	46	4.8	44	76	13	146	23	29	19	27	1.98
52593437--52593474	14	2.9	13	81	11	51	57	10	13	18	1.63
52599067--52599171	53	2.0	53	92	3	176	36	5	20	37	1.77
52609121--52609180	30	2.0	30	90	0	93	40	25	3	31	1.72
52633103--52633151	22	2.2	21	79	10	53	42	2	0	55	1.11
52633114--52633165	10	5.1	10	84	11	61	34	0	1	63	1.06
52633113--52633156	22	2.0	22	95	0	79	38	0	0	61	0.96
52633735--52633777	21	2.0	21	82	8	52	11	23	4	60	1.50
52639685--52639737	26	2.0	26	100	0	106	26	15	20	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52645082--52645252	94	1.8	93	83	1	225	22	26	21	29	1.99
52652328--52652352	13	1.9	13	100	0	50	20	0	0	80	0.72
52652439--52652667	75	3.1	74	87	1	350	27	31	13	27	1.94
52655690--52655737	10	4.8	10	87	10	62	22	8	2	66	1.29
52656503--52656579	39	2.0	38	89	2	118	25	12	2	58	1.48
52662282--52662457	50	3.5	51	82	7	191	26	18	26	29	1.98
52667450--52667484	18	1.9	18	88	0	52	45	20	0	34	1.51
52679951--52680136	40	4.7	40	80	11	211	25	26	22	25	2.00
52682296--52682368	37	2.0	36	94	0	119	16	19	21	41	1.89
52688134--52688175	22	2.0	22	95	4	77	35	14	19	30	1.91
52696150--52696192	22	2.0	22	85	0	59	58	6	0	34	1.25
52703026--52703068	20	2.2	20	82	0	50	37	18	2	41	1.63
52704736--52704797	31	2.0	31	90	0	97	19	27	4	48	1.69
52725474--52725517	22	2.0	22	100	0	88	40	9	18	31	1.81
52733392--52733426	17	2.1	17	100	0	70	48	11	22	17	1.79
52733556--52733619	9	6.8	9	75	10	56	35	3	0	60	1.12
52734152--52734198	21	2.2	21	85	14	62	40	0	2	57	1.11
52745495--52745554	29	2.1	29	90	0	93	55	3	5	36	1.38
52754675--52754701	11	2.5	11	100	0	54	59	0	11	29	1.32
52770941--52770970	15	2.0	15	93	0	51	56	6	0	36	1.26
52771758--52771794	14	2.6	14	86	0	56	54	2	2	40	1.29
52772795--52772843	24	2.0	24	84	0	62	16	12	40	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52776560--52776594	11	3.1	11	87	4	52	34	8	11	45	1.71
52790206--52790631	211	2.0	211	97	0	807	27	19	24	28	1.98
52802803--52802885	41	2.0	41	97	0	157	43	9	34	12	1.75
52811733--52811964	40	5.8	40	91	2	365	22	28	21	26	1.99
52811733--52811964	82	2.9	81	92	2	378	22	28	21	26	1.99
52811733--52811972	122	2.0	121	92	0	399	23	27	21	27	1.99
52815373--52815479	53	2.0	53	94	0	187	27	34	11	27	1.90
52818029--52818072	6	7.3	6	100	0	88	31	0	15	52	1.44
52819195--52819291	48	2.0	48	93	0	167	19	37	12	30	1.89
52842141--52842204	22	3.2	22	61	38	54	28	20	10	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167