genome.fa.s23.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  126  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42183651--42183687	17	2.2	17	100	0	74	5	13	35	45	1.66
42189577--42189797	46	4.7	45	78	10	189	27	18	30	23	1.97
42189582--42189846	47	5.7	47	75	11	172	29	17	29	23	1.97
42189577--42189844	94	2.9	93	80	7	240	28	17	30	23	1.97
42195753--42195838	31	2.8	31	87	1	138	24	23	17	34	1.96
42196043--42196151	25	4.4	25	86	7	91	25	22	22	28	1.99
42196055--42196175	24	4.9	24	90	3	161	23	23	26	27	2.00
42201740--42201959	46	4.7	45	73	14	153	27	19	29	23	1.98
42201885--42202006	47	2.6	47	83	10	137	27	18	30	23	1.97
42203593--42203701	40	2.7	39	92	5	182	25	27	22	23	2.00
42206575--42206615	22	1.9	22	90	5	66	9	41	29	19	1.83
42213167--42213363	42	4.7	42	79	5	173	15	22	17	44	1.87
42213231--42213353	21	5.9	21	70	1	86	16	22	17	43	1.88
42213868--42213892	13	1.9	13	100	0	50	0	48	28	24	1.52
42235018--42235055	15	2.6	15	91	4	60	15	13	10	60	1.59
42236455--42236492	13	2.9	13	96	0	67	34	7	13	44	1.72
42237970--42238028	29	2.0	29	90	0	91	22	32	22	23	1.98
42240444--42240593	47	3.3	46	85	7	182	23	28	20	27	1.99
42249908--42250092	21	8.6	21	69	16	78	23	8	13	54	1.65
42249878--42250113	45	5.5	43	78	6	223	22	9	11	56	1.63
42249887--42250072	87	2.1	86	85	5	241	23	9	11	55	1.65
42250942--42250973	15	2.1	16	94	5	57	15	0	3	81	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42275535--42275560	3	8.7	3	100	0	52	69	0	30	0	0.89
42278569--42278719	33	4.5	33	85	1	158	40	35	9	15	1.79
42289623--42289697	39	1.9	39	94	0	132	17	20	32	30	1.95
42289631--42289709	39	2.0	39	82	4	97	18	22	32	25	1.97
42297821--42297852	13	2.6	13	90	9	50	6	12	0	81	0.87
42298796--42298893	6	16.5	6	93	1	144	82	0	5	12	0.82
42300532--42300567	3	12.0	3	100	0	72	66	0	0	33	0.92
42306088--42306139	23	2.2	23	82	6	59	51	13	0	34	1.41
42306479--42306537	17	3.5	17	92	0	100	38	10	20	30	1.86
42306490--42306538	9	5.7	9	73	26	52	36	12	20	30	1.89
42309121--42309314	27	7.4	27	77	8	202	42	16	18	22	1.88
42309118--42309265	49	2.9	49	87	7	190	43	16	17	22	1.88
42309121--42309311	81	2.4	79	85	6	237	42	16	17	23	1.89
42309339--42309392	23	2.2	24	78	18	58	25	11	20	42	1.85
42309345--42309392	23	2.0	24	84	11	64	27	12	18	41	1.86
42309655--42309706	18	2.8	19	80	8	63	23	19	17	40	1.91
42309696--42309798	34	3.0	34	88	1	134	26	22	23	28	1.99
42315284--42315322	21	1.9	21	94	5	71	10	38	30	20	1.86
42323277--42323321	23	1.9	24	86	4	65	73	2	15	8	1.18
42324059--42324083	10	2.5	10	100	0	50	52	0	8	40	1.31
42324274--42324408	39	3.4	39	74	8	114	23	20	28	27	1.99
42325618--42325655	16	2.4	16	95	0	67	26	34	0	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42326668--42326835	43	4.0	41	73	12	126	32	26	15	25	1.95
42336678--42336834	57	2.8	57	83	3	174	30	15	22	31	1.95
42342287--42342320	15	2.3	15	90	5	52	11	14	2	70	1.27
42346504--42346851	133	2.7	131	80	7	343	38	9	10	40	1.73
42347749--42347865	59	2.0	59	96	0	216	23	3	42	29	1.71
42347749--42347882	59	2.2	59	90	5	198	25	3	41	29	1.72
42352221--42352293	31	2.4	31	77	9	78	35	12	13	38	1.83
42353784--42353845	31	2.1	30	87	6	90	51	9	0	38	1.35
42353784--42353848	29	2.2	29	84	10	80	50	9	0	40	1.34
42355966--42356025	29	2.1	29	96	0	111	43	16	5	35	1.70
42355963--42356016	16	3.6	16	67	23	53	38	18	3	38	1.69
42374229--42388216	352	39.7	352	100	0	27976	25	12	15	46	1.80
42407764--42407858	47	2.0	47	97	0	181	47	17	8	26	1.76
42408097--42408363	94	2.9	93	76	9	278	24	29	17	27	1.98
42408090--42408355	48	5.7	44	74	15	198	23	30	18	27	1.98
42410127--42410155	15	1.9	15	100	0	58	3	20	6	68	1.27
42411826--42411886	16	3.4	16	69	26	50	13	19	11	55	1.67
42411839--42411900	21	3.1	21	66	29	62	11	17	11	59	1.60
42411823--42411900	39	2.0	39	100	0	156	12	17	12	56	1.67
42413886--42413944	30	2.0	30	90	6	93	33	0	45	20	1.51
42413917--42414160	129	1.9	129	87	4	359	34	0	39	25	1.60
42425121--42425170	23	2.2	23	92	0	82	24	28	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42434716--42434830	29	4.0	29	83	6	128	26	28	15	28	1.96
42434707--42434815	58	1.9	58	86	1	157	25	30	16	27	1.97
42435041--42435083	16	2.7	16	85	0	68	6	18	20	53	1.67
42437392--42437559	27	6.2	27	87	0	183	31	20	8	39	1.82
42437378--42437617	54	4.4	54	79	4	225	34	20	8	36	1.83
42437390--42437588	81	2.5	80	78	3	218	33	20	8	37	1.83
42437552--42437719	80	2.1	81	85	5	225	41	20	9	29	1.84
42437552--42437783	27	8.7	27	78	8	197	40	20	10	28	1.85
42437604--42437909	27	11.4	27	81	4	203	38	19	14	26	1.91
42437740--42437909	54	3.1	54	90	0	259	39	19	17	23	1.92
42437889--42437952	27	2.4	28	76	7	69	17	18	28	35	1.93
42442647--42442778	56	2.4	55	89	1	201	28	14	24	32	1.94
42449897--42450065	40	4.2	40	79	0	167	37	15	25	20	1.93
42449867--42450065	80	2.5	80	77	3	204	39	15	25	20	1.91
42451332--42451587	55	4.9	52	72	15	179	37	16	24	21	1.93
42451340--42451540	108	1.8	110	83	6	266	36	16	24	22	1.94
42451779--42451809	16	1.9	16	93	0	53	41	0	22	35	1.54
42455455--42455504	23	2.1	24	82	10	59	26	6	4	64	1.35
42468275--42468344	25	2.8	25	91	0	113	22	27	22	27	1.99
42474781--42474940	42	3.8	42	87	1	223	29	25	15	29	1.96
42486123--42486178	25	2.2	25	93	6	96	48	17	3	30	1.65
42487452--42487523	37	1.9	37	94	0	126	34	19	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42489873--42490029	6	25.8	6	70	16	110	49	13	17	19	1.79
42489873--42490004	24	5.2	24	76	13	122	50	13	15	19	1.77
42489866--42490025	61	2.8	55	84	6	187	50	13	16	19	1.79
42490147--42490212	27	2.5	26	82	7	78	39	22	21	16	1.92
42490165--42490220	27	2.1	27	86	6	78	35	21	25	17	1.95
42490171--42490228	27	2.1	27	84	6	73	37	24	22	15	1.93
42490531--42490613	27	3.1	26	89	5	121	36	21	22	19	1.95
42490812--42491061	27	9.3	27	81	5	281	26	19	18	35	1.95
42490817--42491054	54	4.4	54	89	3	327	26	20	18	35	1.95
42491056--42491535	108	4.5	108	86	4	634	41	10	21	27	1.85
42491066--42491535	27	17.4	27	83	3	534	41	10	21	27	1.84
42493553--42493684	6	21.8	6	75	16	121	49	13	17	19	1.80
42493576--42493709	61	2.2	61	89	2	198	47	13	18	20	1.82
42493827--42493892	27	2.5	26	82	7	78	39	22	21	16	1.92
42493851--42493908	27	2.1	27	84	12	75	37	25	20	15	1.92
42494065--42494123	22	2.7	22	81	0	64	32	22	25	20	1.98
42494211--42494293	27	3.1	26	86	5	94	36	21	22	19	1.95
42494511--42494741	27	8.6	27	88	0	300	25	19	18	35	1.95
42494734--42495187	108	4.2	109	84	6	552	40	9	22	28	1.85
42494746--42495187	27	16.4	27	84	5	464	40	9	22	28	1.84
42498529--42498596	34	2.0	34	100	0	136	35	17	17	29	1.93
42505433--42505460	13	2.2	13	100	0	56	17	28	32	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42511773--42511835	30	2.1	30	96	0	117	33	17	20	28	1.95
42550062--42550143	42	2.0	42	83	9	105	23	35	24	17	1.95
42551581--42551620	21	1.9	21	89	0	62	40	25	0	35	1.56
42561329--42561372	16	2.8	17	83	10	58	45	0	0	54	0.99
42564061--42564291	50	4.7	49	78	3	257	25	17	26	29	1.97
42564068--42564291	99	2.3	99	83	3	272	26	17	26	29	1.97
42567767--42567833	31	2.2	31	100	0	134	19	32	10	37	1.86
42575087--42575167	29	2.8	29	88	0	117	28	14	25	30	1.95
42577323--42577363	18	2.3	18	100	0	82	43	17	4	34	1.70
42577615--42577654	19	2.1	19	95	0	71	10	45	25	20	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167