genome.fa.s23.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  98  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32531912--32531986	38	2.0	38	100	0	150	36	18	13	32	1.90
32531912--32531972	19	3.1	20	68	18	56	36	19	13	31	1.90
32531925--32531987	19	3.3	19	70	16	67	34	19	12	33	1.89
32533967--32534002	18	2.0	18	100	0	72	44	11	5	38	1.63
32535905--32536004	41	2.4	41	96	0	182	30	26	22	22	1.99
32549673--32549718	23	2.0	23	82	0	56	23	30	8	36	1.85
32554260--32554394	68	2.0	68	85	0	180	23	22	17	37	1.94
32555672--32555709	16	2.4	16	100	0	76	39	7	26	26	1.83
32559740--32559822	19	4.4	19	75	1	69	16	21	27	33	1.95
32562371--32562417	20	2.3	21	75	10	53	31	8	2	57	1.41
32567790--32567887	45	2.2	45	94	1	171	45	5	14	34	1.67
32568755--32568786	17	1.9	17	93	6	57	43	12	0	43	1.42
32568964--32569022	29	2.0	29	100	0	118	37	16	13	32	1.88
32570372--32570503	50	2.6	50	83	2	158	30	18	28	22	1.98
32570372--32570551	98	1.8	99	81	4	229	28	19	29	22	1.98
32576545--32577238	48	14.8	49	73	11	438	27	18	29	24	1.98
32576856--32577219	193	1.9	189	82	8	452	28	18	28	24	1.98
32579840--32579893	26	2.1	26	92	0	90	16	11	12	59	1.61
32580531--32580577	23	2.0	23	100	0	94	38	21	12	27	1.90
32585770--32585839	35	2.0	35	82	0	86	31	18	24	25	1.98
32587188--32587317	47	2.8	47	83	4	163	23	16	26	33	1.96
32590211--32590485	50	5.7	48	77	8	245	25	31	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32590205--32590487	48	5.9	48	80	6	295	25	31	17	25	1.97
32590200--32590514	48	6.6	46	75	13	212	25	30	18	25	1.98
32591044--32591104	31	2.0	31	83	3	79	32	24	9	32	1.88
32597165--32597399	50	4.8	50	74	11	207	24	28	19	27	1.98
32597121--32597390	50	5.6	47	71	12	174	24	29	19	27	1.98
32597215--32597390	95	1.9	95	85	0	244	23	29	19	27	1.98
32597948--32598008	31	2.0	31	87	3	88	32	24	6	36	1.81
32599817--32599938	24	5.0	24	93	1	208	33	4	40	21	1.75
32602277--32602374	24	4.0	24	90	1	151	36	5	37	20	1.75
32603462--32603511	19	2.6	19	87	0	64	32	16	30	22	1.95
32603776--32603886	27	4.2	26	87	5	150	16	24	22	36	1.94
32607627--32607693	34	2.0	34	90	0	107	37	8	20	32	1.84
32611748--32611778	11	2.8	11	100	0	62	6	16	19	58	1.59
32626046--32626175	47	2.8	47	86	0	170	23	16	25	34	1.95
32644750--32644852	38	2.7	38	95	0	188	26	22	12	38	1.90
32644806--32644869	31	2.1	31	93	0	110	23	23	15	37	1.93
32645077--32645159	25	3.4	24	83	8	105	30	22	20	26	1.98
32645090--32645184	25	3.8	26	82	6	108	29	23	22	25	1.99
32645232--32645278	20	2.3	20	92	7	78	34	19	10	36	1.86
32645359--32645847	258	1.9	258	95	0	879	30	21	13	34	1.92
32653325--32653419	41	2.3	41	90	1	147	22	16	27	33	1.95
32653325--32653462	40	3.4	40	82	2	150	24	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32657644--32658000	47	7.6	46	75	13	248	22	29	19	27	1.98
32657644--32658000	94	3.8	93	79	8	343	22	29	19	27	1.98
32657644--32658003	141	2.6	137	80	8	386	22	30	20	26	1.98
32660907--32660971	13	5.5	12	72	20	57	49	10	1	38	1.47
32660907--32660972	23	2.9	23	93	0	114	50	10	1	37	1.47
32660907--32660980	23	3.2	23	86	3	105	51	10	1	36	1.46
32662414--32662459	23	2.0	22	84	12	58	45	0	2	52	1.13
32665824--32665872	24	2.0	25	96	4	91	28	8	24	38	1.84
32674645--32674679	18	1.9	18	94	0	61	60	5	22	11	1.52
32674929--32675534	196	3.0	202	82	6	758	35	18	17	28	1.94
32678029--32678054	13	2.0	13	100	0	52	15	15	0	69	1.20
32685599--32685624	10	2.6	10	100	0	52	15	0	7	76	0.99
32690760--32690799	19	2.1	19	90	0	62	27	2	7	62	1.35
32690881--32690927	12	3.5	13	81	18	53	59	2	0	38	1.09
32691847--32691873	8	3.4	8	100	0	54	44	0	0	55	0.99
32692442--32692501	30	2.0	30	96	0	111	28	41	6	23	1.79
32694388--32694432	22	2.0	22	91	0	72	33	2	15	48	1.57
32704637--32704715	24	3.4	24	64	7	63	40	12	13	32	1.83
32704987--32705158	54	3.2	54	82	3	141	36	18	22	23	1.95
32705019--32705441	54	7.8	54	80	2	393	38	14	20	26	1.91
32706271--32706408	54	2.6	54	80	0	168	39	14	19	26	1.90
32708142--32708206	33	2.0	33	87	6	96	27	20	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32711561--32711799	54	4.5	54	74	10	179	39	14	20	25	1.91
32711613--32711940	108	3.1	107	74	7	299	37	16	20	25	1.93
32712253--32712542	54	5.4	54	79	5	291	37	14	22	26	1.92
32712398--32713275	400	2.2	401	78	5	891	33	16	18	32	1.93
32713193--32713366	54	3.2	54	80	4	163	36	14	18	29	1.91
32713397--32713528	54	2.4	54	76	5	133	40	15	15	28	1.88
32714591--32714850	54	4.8	54	75	8	208	38	13	20	27	1.90
32714591--32714852	108	2.4	107	77	6	240	38	14	20	27	1.91
32715101--32715339	54	4.4	54	70	9	164	36	12	22	27	1.91
32714252--32715761	510	3.0	508	83	2	1751	33	16	17	32	1.93
32715631--32715966	54	6.2	54	75	8	227	36	12	23	27	1.91
32715631--32715896	108	2.5	108	77	6	261	36	12	23	28	1.90
32715777--32716031	108	2.4	106	76	5	242	36	13	20	29	1.91
32715631--32716033	54	7.5	53	73	8	201	36	12	22	28	1.91
32716391--32716596	54	3.8	52	75	11	166	40	14	17	27	1.89
32716391--32716596	108	1.9	108	81	5	247	40	14	17	27	1.89
32717275--32717532	54	4.8	54	76	4	207	40	15	18	25	1.90
32717399--32717573	54	3.2	53	75	6	147	40	12	18	28	1.88
32720653--32720843	54	3.5	54	84	1	213	39	13	20	26	1.90
32721121--32721279	54	2.9	54	88	1	221	38	13	21	27	1.90
32721162--32721252	30	3.2	30	66	23	88	38	14	20	26	1.91
32721158--32721310	54	2.8	54	90	0	225	39	13	18	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32720500--32721748	451	2.8	448	78	7	1281	34	18	15	31	1.92
32721611--32721816	108	1.9	108	85	0	286	40	15	17	26	1.89
32721592--32721837	54	4.6	54	77	5	219	40	15	17	26	1.89
32721592--32721837	108	2.3	107	80	2	276	40	15	17	26	1.89
32722005--32722126	54	2.3	54	79	0	127	23	18	15	42	1.88
32724912--32725135	40	5.6	39	85	7	265	24	22	28	25	2.00
32724918--32725168	119	2.1	119	81	7	287	25	21	27	25	1.99
32732111--32732286	54	3.3	54	75	6	151	38	14	20	27	1.91
32732256--32732423	54	3.1	53	76	4	138	40	16	18	25	1.90
32732694--32732826	54	2.5	54	74	0	122	39	12	18	29	1.87
32732829--32732892	24	2.6	24	90	5	92	45	12	12	29	1.79
32732935--32733423	243	2.0	243	80	5	542	37	14	16	31	1.90
32733673--32733774	54	1.9	53	82	6	125	35	15	17	31	1.92
32734112--32734286	54	3.2	53	74	6	147	36	16	21	26	1.94
32734081--32734347	108	2.5	108	77	9	258	37	16	20	25	1.93
32734726--32734873	54	2.7	54	80	4	154	38	12	18	31	1.87
32735314--32735545	54	4.3	54	75	6	173	37	14	21	26	1.91
32735375--32735503	55	2.4	54	80	6	127	38	12	20	28	1.89
32736338--32736552	54	4.0	54	74	1	178	36	13	20	29	1.90
32734968--32736932	511	3.9	504	75	6	1691	34	16	16	32	1.92
32736833--32736954	54	2.3	55	85	2	158	38	13	21	27	1.90
32736749--32737260	255	2.0	252	79	7	552	36	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32737192--32737313	54	2.3	54	81	2	138	38	11	21	28	1.88
32738447--32738605	54	3.0	54	75	2	133	34	9	23	32	1.87
32738667--32738773	54	2.0	54	81	0	124	39	14	16	28	1.89
32738647--32738852	108	1.9	108	80	4	236	38	14	20	26	1.91
32739259--32740227	452	2.2	450	81	5	1072	36	17	15	30	1.92
32740152--32740328	54	3.3	54	80	3	178	37	14	20	27	1.91
32739259--32740354	442	2.4	449	79	5	1058	36	17	16	29	1.92
32740661--32740861	54	3.8	54	78	5	183	36	16	20	26	1.94
32743378--32743418	20	2.0	21	86	13	59	31	17	26	24	1.97
32743395--32743515	54	2.3	53	82	7	138	33	12	23	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167