genome.fa.s23.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  64  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20120944--20120972	3	9.7	3	100	0	58	65	0	0	34	0.93
20121578--20121602	7	3.6	7	100	0	50	0	12	0	88	0.53
20121866--20122011	70	2.1	70	97	1	276	23	13	22	39	1.90
20126061--20126086	13	2.0	13	100	0	52	53	15	0	30	1.42
20130036--20130062	7	3.9	7	100	0	54	85	0	14	0	0.61
20132443--20132481	5	7.8	5	83	11	53	17	0	2	79	0.84
20134471--20134510	20	2.0	20	85	0	53	55	17	0	27	1.43
20139503--20139577	38	2.0	38	94	2	134	40	8	21	30	1.82
20141554--20141793	50	4.9	50	83	8	296	27	17	31	23	1.97
20141568--20141793	95	2.3	97	87	5	314	26	18	30	23	1.98
20141556--20141876	50	6.8	49	77	14	232	28	17	29	25	1.97
20141764--20141846	40	2.1	40	97	0	157	27	12	27	32	1.92
20146969--20147190	48	4.7	45	76	11	164	23	31	18	26	1.98
20147113--20147287	94	1.9	94	84	2	237	23	27	20	29	1.99
20147024--20147284	140	1.9	140	83	7	341	23	29	18	29	1.97
20152470--20152503	18	1.9	18	88	5	52	70	0	20	8	1.13
20155598--20155714	51	2.3	51	91	2	191	29	22	14	33	1.94
20156769--20156810	16	2.6	16	100	0	84	35	7	7	50	1.57
20160939--20160989	25	2.0	25	96	0	93	56	15	9	17	1.65
20167966--20168266	150	2.0	150	96	0	557	28	18	23	30	1.97
20170671--20170754	25	3.2	25	65	31	66	41	11	5	40	1.66
20170669--20170783	55	2.1	56	96	1	214	41	12	5	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20170681--20170767	25	3.3	25	67	30	72	39	13	5	41	1.69
20170892--20170962	29	2.5	29	76	17	76	64	1	1	32	1.11
20170883--20170940	18	3.2	18	76	11	64	63	1	0	34	1.04
20171572--20171617	19	2.3	20	92	7	85	23	19	0	56	1.42
20172755--20172800	23	1.9	25	86	8	69	65	4	4	26	1.30
20174709--20174857	77	1.9	78	86	1	210	25	16	28	28	1.97
20174790--20174973	48	3.6	48	79	14	217	25	18	28	27	1.98
20174826--20174937	58	1.9	58	90	0	179	24	17	30	27	1.97
20182385--20182424	20	2.0	20	95	0	71	42	15	12	30	1.83
20188210--20188382	45	3.9	45	81	8	153	24	28	22	24	1.99
20188257--20188382	45	2.8	45	84	7	159	26	27	23	23	2.00
20188210--20188382	90	1.9	88	80	11	201	24	28	22	24	1.99
20188380--20188534	38	4.1	38	87	1	204	30	25	22	21	1.99
20199899--20200359	230	2.0	230	100	0	922	32	19	18	29	1.96
20202240--20202616	40	9.5	40	93	1	625	27	27	23	22	1.99
20211356--20211448	44	2.1	44	81	13	104	22	25	15	36	1.93
20217956--20218056	47	2.2	47	80	8	109	29	13	28	27	1.95
20225128--20225340	46	4.6	45	76	10	148	29	17	27	24	1.98
20225179--20225349	93	1.8	94	83	6	231	29	18	28	23	1.98
20232299--20232340	22	2.0	21	85	4	57	9	35	33	21	1.86
20235349--20235519	93	1.8	93	93	0	297	28	28	21	22	1.99
20235344--20235516	46	3.7	46	76	13	192	29	27	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20235939--20235998	30	2.0	30	93	0	102	30	25	6	38	1.81
20237740--20237890	48	3.2	47	85	2	133	29	29	7	32	1.86
20237762--20237913	48	3.2	48	93	0	250	30	28	6	34	1.83
20256622--20256698	40	1.9	40	89	0	118	31	23	16	28	1.96
20261765--20261822	30	1.9	30	85	0	80	32	13	25	27	1.94
20262165--20262380	46	4.7	45	79	14	217	26	20	30	22	1.98
20264700--20264763	32	2.0	32	96	0	119	31	14	21	32	1.93
20271193--20271414	123	1.8	123	96	0	417	26	13	22	36	1.92
20277710--20277861	40	3.8	40	90	5	236	23	22	28	26	1.99
20277710--20277887	80	2.2	80	89	4	263	24	23	26	25	2.00
20277711--20277887	40	4.4	40	88	6	227	24	22	27	25	2.00
20283246--20283282	14	2.6	15	83	12	51	56	0	5	37	1.22
20283340--20283376	17	2.2	16	90	4	56	72	0	27	0	0.84
20284278--20284363	31	2.8	31	91	1	147	23	26	18	31	1.97
20284583--20284652	25	2.8	25	82	0	86	25	20	24	30	1.99
20284855--20284987	27	5.0	27	85	1	151	26	21	17	35	1.95
20284856--20284992	53	2.6	54	83	1	168	27	20	16	35	1.94
20284980--20285228	27	9.2	27	81	4	171	32	7	20	38	1.81
20285153--20285280	27	4.7	27	89	3	186	39	8	21	30	1.84
20292099--20292244	39	3.8	38	87	0	202	23	19	29	27	1.98
20292093--20292253	77	2.1	78	84	1	198	23	20	27	27	1.99
20293594--20293658	28	2.3	28	81	0	76	27	26	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20294813--20294945	35	3.8	35	80	5	144	33	19	14	33	1.92
20295890--20295922	12	2.6	13	85	9	50	9	45	0	45	1.35
20296991--20297055	28	2.3	28	91	0	103	32	27	9	30	1.88
20297161--20297250	27	3.2	28	81	7	112	18	24	24	32	1.97
20297171--20297261	27	3.2	28	81	4	94	20	26	20	31	1.98
20297161--20297275	55	2.1	56	82	8	137	18	24	22	34	1.96
20298338--20298378	10	3.6	11	87	12	57	34	9	12	43	1.75
20305229--20305453	40	5.7	39	87	3	281	24	28	23	23	2.00
20309051--20309115	28	2.3	28	91	0	103	32	27	9	30	1.88
20309221--20309310	28	3.2	28	78	13	105	18	23	25	32	1.97
20309231--20309321	27	3.2	28	80	7	87	20	25	21	31	1.98
20309221--20309335	55	2.1	56	80	11	130	18	23	23	34	1.96
20311505--20311577	28	2.6	28	80	12	78	34	24	19	21	1.96
20312382--20312438	27	2.1	28	80	9	64	35	1	19	43	1.61
20316114--20316244	55	2.4	55	83	2	156	22	21	31	25	1.98
20319721--20319914	39	5.0	39	91	0	298	25	29	22	22	1.99
20325239--20325287	19	2.5	20	80	12	57	32	20	0	46	1.51
20325525--20325602	33	2.3	33	82	6	95	39	19	0	41	1.51
20326455--20326656	102	2.0	102	96	1	370	42	5	17	34	1.74
20326963--20327046	22	3.7	22	84	10	100	25	21	17	35	1.95
20326931--20327068	23	5.9	23	79	8	120	23	21	20	34	1.97
20330963--20331135	46	3.7	46	78	13	201	21	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20330959--20331130	93	1.8	93	93	0	299	21	22	29	27	1.99
20337106--20337189	23	3.7	23	69	15	66	23	19	20	36	1.95
20356352--20356419	26	2.6	26	97	0	127	23	23	29	23	1.99
20359965--20360072	15	7.2	15	69	12	87	25	23	7	43	1.79
20359955--20360078	30	4.1	30	95	1	212	25	25	6	42	1.78
20364649--20364772	30	4.1	30	91	1	194	25	23	6	44	1.77
20364659--20364766	15	7.2	15	65	12	69	25	21	7	45	1.78
20365418--20365476	27	2.1	28	90	3	93	37	1	0	61	1.07
20365437--20365510	22	3.5	22	76	10	73	37	0	1	60	1.05
20366030--20366088	28	2.1	28	81	6	66	52	3	1	42	1.28
20366438--20366464	4	6.8	4	100	0	54	22	0	0	77	0.76
20371984--20372020	19	1.9	19	88	0	56	51	2	8	37	1.46
20372228--20372261	13	2.5	14	90	4	52	29	20	5	44	1.75
20377447--20377825	144	2.6	144	86	1	508	24	28	18	28	1.98
20377447--20377808	48	7.5	48	82	4	401	24	28	18	29	1.98
20380638--20380681	20	2.3	18	81	11	52	40	0	20	38	1.53
20381315--20381481	46	3.6	46	76	10	171	31	19	26	22	1.98
20381315--20381525	48	4.5	47	78	10	184	31	19	26	22	1.98
20381315--20381525	93	2.3	94	83	6	259	31	19	26	22	1.98
20388052--20388301	40	6.3	40	90	3	292	24	21	28	26	1.99
20387999--20388301	80	3.8	79	84	3	342	25	21	27	26	1.99
20387999--20388301	120	2.5	119	83	3	358	25	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20394482--20394705	40	5.6	40	91	1	308	24	20	28	26	1.99
20394443--20394705	80	3.3	80	85	3	318	23	20	28	26	1.99
20394443--20394705	120	2.2	120	82	4	318	23	20	28	26	1.99
20409203--20409582	48	7.9	48	80	4	383	23	28	19	28	1.98
20409203--20409583	144	2.6	144	87	2	523	23	28	19	28	1.98
20412306--20412347	18	2.4	17	84	11	57	7	21	2	69	1.25
20426298--20426875	289	2.0	289	100	0	1156	28	15	26	29	1.96
20432221--20432271	27	1.9	26	88	4	75	45	11	7	35	1.70
20433693--20433736	18	2.4	17	85	14	61	63	0	2	34	1.07
20433782--20434427	323	2.0	323	99	0	1267	35	15	19	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167