genome.fa.s23.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  44  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13512731--13512769	11	3.5	11	79	6	51	17	12	10	58	1.61
13524275--13524337	26	2.5	25	79	5	65	19	23	20	36	1.95
13524408--13524492	25	3.4	25	72	1	91	23	27	16	32	1.96
13528262--13528363	21	4.8	21	71	15	59	6	17	2	72	1.19
13528262--13528315	26	2.1	25	86	3	72	3	20	3	72	1.16
13535797--13535904	26	4.2	26	95	0	198	30	6	25	37	1.81
13538878--13538945	26	2.8	24	77	8	66	1	22	4	72	1.11
13538904--13538970	25	2.7	24	82	15	66	5	16	2	74	1.14
13539415--13539521	53	2.0	53	92	0	178	26	24	19	29	1.98
13543976--13544020	23	2.0	23	86	0	63	33	6	4	55	1.46
13544016--13544081	33	2.0	33	100	0	132	45	9	6	39	1.61
13549631--13549655	11	2.3	11	100	0	50	8	28	0	64	1.22
13550890--13550941	25	2.1	25	85	0	68	36	9	15	38	1.80
13551569--13551631	33	1.9	33	100	0	126	36	19	4	39	1.72
13569839--13569916	15	5.2	15	83	6	88	11	15	15	57	1.65
13573716--13573761	23	2.0	23	84	12	60	45	10	6	36	1.65
13573723--13573767	23	2.0	23	82	8	56	40	13	8	37	1.76
13577573--13577756	43	4.3	43	90	1	262	24	32	22	20	1.98
13581871--13582713	54	15.6	54	100	0	1686	31	24	18	25	1.98
13589660--13590367	354	2.0	352	96	1	1312	31	19	15	33	1.93
13593328--13593545	109	2.0	109	98	0	418	28	25	18	27	1.98
13598359--13598443	21	3.9	21	73	11	80	44	24	2	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13598343--13598436	46	2.0	46	89	0	143	42	24	3	29	1.70
13598607--13598703	41	2.4	41	89	1	142	15	20	23	40	1.91
13598757--13598782	12	2.2	12	100	0	52	46	30	15	7	1.74
13599433--13599492	26	2.2	28	85	5	79	70	1	1	26	1.07
13600193--13600217	5	5.0	5	100	0	50	20	0	0	80	0.72
13619464--13619514	10	4.9	11	86	13	65	68	1	5	23	1.22
13625245--13625307	28	2.3	28	81	8	67	57	3	7	31	1.43
13625558--13625597	21	1.9	21	85	10	55	77	2	5	15	1.04
13628391--13628443	23	2.3	23	83	6	63	35	15	18	30	1.92
13635674--13635714	7	5.2	8	83	11	50	53	0	0	46	1.00
13637375--13637414	21	1.9	21	85	10	55	30	0	15	55	1.41
13646418--13646469	19	2.7	19	96	0	95	36	21	21	21	1.95
13650154--13650216	26	2.4	26	83	0	90	33	20	17	28	1.95
13651562--13651587	8	3.2	8	100	0	52	23	0	0	76	0.78
13652651--13652683	17	2.0	17	88	5	50	12	6	9	72	1.26
13653912--13653949	14	2.7	14	91	0	58	36	7	18	36	1.80
13654041--13654080	20	2.0	20	100	0	80	50	0	0	50	1.00
13654036--13654080	20	2.4	18	85	7	54	46	2	0	51	1.13
13656344--13656368	4	6.2	4	100	0	50	72	0	28	0	0.86
13656353--13656393	20	2.2	18	86	8	55	70	0	29	0	0.87
13657503--13657621	53	2.2	53	89	0	184	19	16	20	43	1.88
13657743--13657794	18	2.8	19	76	5	61	34	7	7	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13657828--13657891	18	3.6	18	80	0	74	40	9	10	39	1.73
13657832--13657900	36	1.9	36	81	0	84	40	7	11	40	1.69
13662474--13662508	17	1.9	19	88	11	56	54	2	42	0	1.15
13666096--13666126	6	5.2	6	92	0	53	64	0	19	16	1.29
13666263--13666339	27	2.9	26	75	21	79	48	9	11	31	1.71
13670902--13670928	14	1.9	14	100	0	54	22	18	0	59	1.38
13671279--13671328	20	2.5	20	96	0	91	8	32	8	52	1.60
13674795--13674843	9	5.4	9	87	0	62	34	6	40	18	1.75
13674804--13674843	18	2.2	18	95	0	71	35	5	42	17	1.71
13675049--13675121	11	6.7	10	76	13	56	9	10	24	54	1.65
13675048--13675119	22	3.2	22	76	5	65	9	11	23	55	1.64
13675636--13675730	47	2.0	47	91	0	154	45	7	13	33	1.72
13684354--13684435	41	2.0	41	90	0	128	39	14	17	29	1.89
13688611--13688730	16	7.5	15	68	23	61	73	4	4	18	1.16
13698863--13698935	37	2.0	37	100	0	146	32	19	6	41	1.78
13699313--13699369	20	3.0	19	70	7	53	31	29	21	17	1.96
13701271--13701330	30	2.0	31	86	3	86	60	11	1	26	1.41
13703625--13703818	95	2.0	95	100	0	388	31	22	15	30	1.95
13703625--13703828	48	4.3	48	86	1	286	31	22	15	31	1.94
13713915--13714086	93	1.8	93	96	0	317	29	29	20	20	1.98
13713908--13714083	46	3.8	46	81	12	225	30	29	19	20	1.97
13716963--13717236	136	2.0	136	99	0	539	26	22	4	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13720462--13720498	19	2.1	19	90	10	60	37	2	0	59	1.12
13729755--13729966	49	4.6	46	81	9	159	29	25	14	30	1.95
13729796--13729966	47	3.6	48	85	6	197	29	26	15	28	1.96
13729988--13730198	31	6.8	31	90	0	305	26	26	18	27	1.98
13730174--13730302	50	2.5	51	89	2	206	25	23	16	34	1.95
13744967--13744997	15	2.1	15	93	0	53	12	9	0	77	0.99
13755963--13756011	22	2.3	22	79	13	57	22	6	2	69	1.21
13759159--13759232	36	2.1	36	89	5	114	41	8	25	22	1.81
13760920--13760952	16	2.0	17	88	5	50	39	18	21	21	1.93
13765258--13765339	40	2.0	40	95	0	146	18	32	6	42	1.75
13769598--13769630	13	2.6	13	90	4	50	39	0	12	48	1.40
13778302--13778553	133	1.9	133	81	4	312	32	17	20	29	1.96
13778482--13778833	128	2.7	131	79	8	371	32	19	19	28	1.96
13778254--13778865	88	7.0	86	76	9	497	33	17	18	29	1.95
13778256--13778839	44	13.3	44	76	10	428	33	18	19	29	1.95
13778616--13778896	88	3.2	88	81	8	229	33	19	19	27	1.96
13780461--13780509	22	2.3	22	79	13	57	22	6	2	69	1.21
13782651--13782722	24	3.2	24	61	15	62	51	4	5	38	1.45
13782649--13782736	44	2.0	44	100	0	176	50	4	6	38	1.50
13783956--13783994	20	2.0	20	85	5	53	56	0	12	30	1.37
13790329--13790483	43	3.6	43	92	3	258	30	34	24	10	1.89
13790481--13790599	38	3.1	38	86	2	139	29	24	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13803787--13803929	42	3.2	42	63	25	103	23	25	23	27	2.00
13803766--13803951	93	2.0	93	100	0	372	23	26	21	27	1.99
13814115--13814145	13	2.4	13	94	0	53	3	16	0	80	0.83
13821277--13821344	30	2.3	30	82	5	75	48	4	17	29	1.67
13823785--13824304	91	5.7	91	98	0	986	42	13	22	21	1.87
13824600--13824632	17	2.0	17	88	5	50	48	3	15	33	1.60
13828680--13828719	19	2.1	19	86	9	55	57	7	2	32	1.40
13829134--13829224	17	5.4	17	68	25	59	39	5	3	51	1.41
13829203--13829319	62	1.9	59	87	5	171	41	4	4	49	1.42
13830629--13830702	36	2.1	36	100	0	148	50	5	8	36	1.55
13834839--13834903	24	2.6	24	78	4	67	32	18	29	20	1.96
13838176--13838303	27	4.7	27	75	14	84	31	23	10	34	1.89
13840014--13840059	21	2.2	21	96	0	83	50	6	8	34	1.59
13840140--13840174	18	2.0	18	88	5	54	37	0	0	62	0.95
13841828--13841903	9	8.2	9	71	18	50	2	18	3	75	1.08
13841830--13841859	16	1.9	16	93	6	53	0	16	0	83	0.65
13841845--13841877	14	2.5	14	90	9	52	3	18	0	78	0.87
13850216--13850263	24	2.1	22	84	7	60	41	8	0	50	1.33
13850257--13850330	19	3.6	19	68	16	58	54	4	2	39	1.34
13853850--13854176	145	2.2	146	97	1	613	50	19	13	16	1.78
13853850--13854249	145	2.8	145	90	4	540	48	20	14	17	1.81
13856233--13856299	29	2.2	31	82	10	77	34	5	7	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13860061--13860145	44	1.9	44	97	0	161	16	16	15	51	1.76
13862712--13862776	15	4.3	15	72	14	62	49	3	18	29	1.63
13862863--13862892	5	6.0	5	96	0	51	76	0	3	20	0.92
13865809--13865876	35	1.9	35	93	0	118	38	16	11	33	1.85
13869542--13869756	87	2.4	92	80	10	253	45	6	6	41	1.56
13869867--13869922	20	2.6	22	83	5	71	44	3	3	48	1.37
13871205--13871353	77	1.9	77	83	6	194	24	6	9	59	1.52
13874053--13874718	44	15.1	44	87	3	858	26	29	14	29	1.95
13880036--13880086	26	2.0	25	92	0	75	35	15	19	27	1.92
13882833--13882864	14	2.1	16	88	11	50	43	12	25	18	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167