Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  167  of  167  ( 19959 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55267241--55267281
17
2.5
17
88
4
57
46
4
0
48
1.23
55268790--55268828
16
2.4
15
87
12
51
30
0
2
66
1.05
55268797--55268828
16
1.9
17
93
6
57
31
0
0
68
0.90
55269943--55269981
2
19.5
2
100
0
78
51
0
48
0
1.00
55272825--55272868
22
2.0
22
100
0
88
18
18
22
40
1.91
55275884--55276061
47
3.8
46
77
7
191
28
19
29
22
1.98
55275840--55276060
47
4.7
46
75
14
154
29
19
28
22
1.98
55275839--55276060
93
2.4
93
83
6
261
29
19
28
22
1.98
55281884--55281914
16
1.9
16
93
0
53
35
22
0
41
1.54
55281881--55281920
20
2.0
20
85
0
53
37
22
0
40
1.54
55282106--55282360
55
4.8
53
80
9
245
21
25
17
36
1.95
55282153--55282353
108
1.8
110
90
4
327
22
25
17
34
1.96
55284847--55285024
27
6.6
27
84
3
205
29
28
15
26
1.96
55284868--55285023
82
1.9
81
88
3
233
29
28
15
26
1.96
55287087--55287135
20
2.5
20
96
0
89
22
8
22
46
1.77
55288202--55288330
47
2.7
47
89
4
181
27
20
30
21
1.98
55296760--55296900
24
5.9
24
87
1
185
31
32
14
20
1.93
55298230--55298265
17
2.1
17
94
0
63
33
5
0
61
1.19
55313806--55313915
24
4.6
24
81
4
114
30
34
13
20
1.92
55313799--55313915
48
2.4
48
81
5
139
32
33
12
21
1.91
55315234--55315267
17
2.0
17
94
0
59
38
5
0
55
1.24
55318378--55318414
18
2.1
18
100
0
74
13
37
16
32
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55323075--55323111
18
2.1
18
100
0
74
13
37
16
32
1.87
55347000--55347040
22
1.9
21
85
5
55
21
31
36
9
1.86
55347647--55347725
35
2.3
35
93
0
131
43
15
15
26
1.86
55348271--55348482
46
4.5
46
76
11
173
23
30
16
28
1.97
55350530--55350566
14
2.6
14
95
0
65
29
16
10
43
1.82
55350717--55350748
16
1.9
17
93
6
57
21
6
6
65
1.38
55355195--55355407
46
4.6
47
77
14
174
29
16
29
24
1.97
55362660--55362698
21
1.9
21
89
5
62
12
35
30
20
1.90
55364617--55364682
32
2.1
32
94
0
114
36
22
13
27
1.92
55379830--55379889
31
2.0
31
83
3
77
36
21
25
16
1.94
55379905--55379956
27
2.0
26
84
3
68
34
21
26
17
1.95
55380443--55380473
10
3.1
10
95
0
53
25
9
32
32
1.88
55382427--55382481
28
2.0
28
96
0
101
21
32
10
34
1.89
55391830--55391878
21
2.3
21
82
10
55
22
30
0
46
1.52
55397447--55397579
69
1.9
70
90
1
214
32
14
16
36
1.89
55415437--55415474
19
2.0
19
90
10
60
47
21
10
21
1.80
55421415--55421461
20
2.6
19
81
15
55
21
4
4
70
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167

The End!