genome.fa.s23.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  141  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47120732--47120766	17	2.0	18	88	5	54	28	2	8	60	1.41
47120881--47120991	45	2.5	45	85	2	152	43	16	17	23	1.87
47121188--47121274	40	2.2	40	83	8	106	42	17	8	32	1.78
47121536--47121569	17	1.9	18	88	5	52	2	26	0	70	1.01
47124006--47124051	24	1.9	24	82	8	58	60	2	2	34	1.21
47124053--47124106	8	6.8	8	79	12	58	38	1	0	59	1.08
47124054--47124108	22	2.4	25	85	11	73	40	1	0	58	1.09
47125083--47125200	58	2.0	58	93	0	200	22	16	27	32	1.96
47128526--47128774	41	6.1	40	86	3	338	34	20	22	22	1.96
47128526--47128774	81	3.1	80	86	6	331	34	20	22	22	1.96
47128843--47128876	17	1.9	18	88	5	52	50	35	0	14	1.44
47129387--47129435	24	2.0	24	100	0	98	53	0	4	42	1.20
47135643--47135687	22	2.0	22	91	0	72	33	2	15	48	1.57
47138503--47138543	19	2.2	19	86	4	57	21	2	4	70	1.18
47138725--47138773	26	2.0	23	88	11	71	28	8	6	57	1.52
47139762--47139975	52	3.9	51	74	17	189	47	14	10	28	1.77
47139822--47139991	64	2.9	58	71	21	160	48	13	10	27	1.75
47139771--47139991	116	1.9	115	91	2	365	47	13	11	27	1.78
47145855--47145897	21	2.1	21	82	4	52	51	6	18	23	1.70
47147261--47147302	21	2.0	21	85	4	57	47	19	7	26	1.74
47147666--47147753	43	2.0	43	82	2	104	27	25	13	34	1.93
47147738--47148114	87	4.3	86	68	19	260	27	23	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47147650--47148140	261	1.9	256	87	4	718	26	23	17	32	1.96
47147972--47148930	205	4.7	205	93	0	1586	28	21	18	31	1.97
47149873--47149938	1	66.0	1	72	0	51	4	9	0	86	0.70
47169155--47169318	43	3.8	43	76	6	145	29	16	23	31	1.96
47174121--47174161	19	2.2	19	86	0	55	36	2	2	58	1.24
47174115--47174174	28	2.1	28	82	11	70	40	1	1	56	1.19
47174222--47174754	266	2.0	267	97	1	1007	46	11	10	32	1.73
47177853--47177930	39	2.0	39	89	0	120	34	23	16	25	1.95
47178723--47178756	12	2.8	12	90	4	50	2	11	2	82	0.89
47178463--47179021	187	3.0	187	96	2	1002	34	12	15	38	1.84
47183749--47183806	28	2.1	28	96	0	107	36	3	20	39	1.70
47194640--47194888	50	4.8	50	85	4	284	20	29	24	26	1.99
47194639--47194888	100	2.4	104	88	6	357	20	29	24	26	1.99
47194983--47195014	13	2.5	13	94	0	55	56	12	0	31	1.37
47195226--47195283	30	1.9	30	89	0	89	31	24	3	41	1.71
47200181--47200220	20	2.0	21	85	5	55	20	22	17	40	1.92
47200247--47200323	39	2.0	39	86	0	109	14	24	24	36	1.93
47208390--47208461	28	2.6	28	86	0	90	29	26	12	31	1.93
47213633--47213668	15	2.4	15	95	0	63	38	8	11	41	1.71
47214099--47214143	14	3.2	14	81	12	65	71	2	0	26	0.98
47221673--47221735	32	2.0	32	93	0	108	39	26	11	22	1.87
47223840--47223870	15	2.1	15	93	0	53	67	9	0	22	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47233257--47233284	7	4.0	7	100	0	56	57	0	0	42	0.99
47234069--47234193	61	2.0	61	90	3	198	46	9	2	41	1.49
47234415--47234461	20	2.3	20	75	7	51	48	0	2	48	1.13
47235958--47235998	21	2.0	21	95	0	73	68	0	0	31	0.90
47239340--47239554	107	2.0	107	100	0	430	32	14	10	42	1.79
47244447--47244484	13	2.9	13	84	11	51	50	0	5	44	1.24
47244923--47244971	24	2.0	25	88	4	73	44	2	10	42	1.49
47246684--47246736	16	3.2	16	91	2	88	24	1	37	35	1.67
47246972--47247006	18	2.0	17	88	5	52	54	0	0	45	0.99
47247064--47247154	26	3.4	26	73	11	94	51	2	1	45	1.20
47252453--47252661	43	4.9	43	92	0	310	32	26	17	23	1.97
47257031--47257070	16	2.6	16	88	7	57	45	0	35	20	1.51
47257427--47257479	25	2.1	26	82	3	63	18	3	5	71	1.21
47257426--47257479	19	2.8	18	78	10	54	20	3	5	70	1.23
47257789--47257855	22	3.1	21	78	8	64	34	41	1	22	1.63
47257800--47257854	7	7.7	7	79	4	65	32	47	0	20	1.50
47258133--47258186	26	2.1	26	85	0	72	31	44	0	24	1.54
47258132--47258198	14	4.9	14	78	7	66	34	41	0	23	1.55
47258149--47258198	7	7.4	7	80	8	50	36	42	0	22	1.54
47258221--47258253	14	2.3	15	94	5	59	36	33	0	30	1.58
47258837--47259151	148	2.1	148	95	2	571	24	16	14	44	1.85
47259157--47259182	12	2.2	12	100	0	52	46	30	15	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47260131--47260156	13	2.0	13	100	0	52	61	7	30	0	1.24
47260121--47260199	36	2.2	36	93	0	131	54	13	24	7	1.65
47270152--47270256	52	2.0	52	98	0	201	19	34	13	33	1.90
47276522--47276564	21	2.0	21	100	0	86	37	4	23	34	1.76
47292012--47292042	16	1.9	16	93	0	53	35	22	0	41	1.54
47292009--47292048	20	2.0	20	85	0	53	37	22	0	40	1.54
47292234--47292485	55	4.7	54	81	7	268	21	25	17	35	1.95
47292281--47292481	108	1.8	110	89	6	320	22	25	17	34	1.96
47301880--47301935	5	11.2	5	96	0	103	42	17	19	19	1.89
47310394--47310507	56	2.0	56	96	0	210	41	19	13	26	1.88
47311488--47311555	20	3.2	21	66	25	61	52	13	14	19	1.73
47311472--47311557	43	2.0	43	100	0	172	51	13	13	20	1.76
47314014--47314189	46	3.8	46	79	12	198	21	20	27	30	1.98
47314010--47314181	93	1.8	93	92	0	290	20	20	28	29	1.98
47316782--47316885	52	2.0	52	100	0	208	32	28	17	21	1.96
47321752--47321801	26	2.0	25	92	4	82	58	18	4	20	1.55
47323428--47323514	30	2.9	30	96	0	156	25	24	21	28	1.99
47327175--47327209	17	2.1	17	100	0	70	45	0	0	54	0.99
47327223--47327328	21	5.0	21	67	13	54	22	0	29	47	1.58
47327284--47327328	7	6.3	7	79	5	54	17	0	35	46	1.49
47327284--47327331	15	3.3	15	85	5	71	16	0	35	47	1.47
47327360--47327388	14	2.0	15	93	6	51	20	0	41	37	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47327846--47327913	34	2.0	34	94	0	118	19	25	8	47	1.78
47328758--47328796	16	2.5	15	83	4	51	33	2	2	61	1.23
47331081--47331141	21	2.8	21	76	14	61	60	1	1	36	1.16
47336352--47336413	5	12.4	5	77	19	67	77	0	20	1	0.85
47336345--47336412	9	7.5	8	75	21	55	79	0	19	1	0.81
47337677--47337969	44	6.9	44	82	9	331	29	13	33	23	1.93
47337744--47337810	33	2.0	33	97	0	125	35	10	32	20	1.87
47337700--47338765	88	13.0	77	70	17	246	29	13	32	24	1.93
47337902--47338038	69	2.0	69	85	2	186	27	14	34	23	1.94
47337813--47338124	157	2.0	157	89	0	471	28	13	33	25	1.93
47337970--47338170	44	4.6	44	87	1	278	28	12	33	24	1.93
47337785--47338770	201	4.8	201	92	3	1465	29	13	32	24	1.93
47337857--47338080	113	2.0	113	88	5	337	28	13	33	24	1.93
47338014--47338325	157	2.0	157	89	0	471	28	13	33	24	1.93
47338103--47338239	69	2.0	69	88	2	204	27	16	34	21	1.95
47338171--47338371	44	4.6	44	87	1	278	28	13	33	23	1.94
47338058--47338281	113	2.0	113	88	5	337	28	14	33	23	1.94
47338304--47338440	69	2.0	69	82	2	168	29	16	32	21	1.95
47338372--47338977	44	13.7	44	87	1	707	29	15	31	23	1.95
47338259--47338484	113	2.0	113	90	3	357	29	14	32	23	1.94
47338372--47338992	88	7.0	88	86	1	778	29	15	31	23	1.95
47339025--47339109	44	1.9	44	78	4	73	28	12	29	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47339681--47339730	22	2.2	22	79	13	57	62	22	16	0	1.33
47341978--47342267	132	2.2	132	88	1	413	31	17	16	33	1.93
47342014--47342607	132	4.5	130	78	8	405	27	18	18	35	1.95
47345072--47345130	31	2.0	29	86	6	82	44	1	5	49	1.34
47345106--47345160	12	4.0	13	75	25	51	50	1	0	47	1.11
47345151--47345187	17	2.1	19	90	10	60	64	0	0	35	0.94
47345246--47345284	21	1.9	20	89	5	60	64	2	0	33	1.08
47345266--47345314	16	3.2	16	72	19	50	61	2	0	36	1.08
47345371--47345429	21	2.8	21	87	10	77	62	1	0	35	1.05
47345427--47345501	23	3.2	22	75	9	69	53	4	1	41	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167