genome.fa.s23.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  65  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20438633--20438895	40	6.6	39	86	4	278	25	27	21	25	1.99
20438633--20438895	120	2.2	119	82	4	307	25	27	21	25	1.99
20438827--20438904	40	1.9	41	82	10	97	26	28	20	24	1.99
20450010--20450295	50	5.7	50	100	0	572	23	31	16	27	1.96
20460697--20460863	46	3.6	46	77	15	207	24	28	17	28	1.98
20463800--20464154	48	7.4	48	76	11	359	30	16	25	27	1.97
20463800--20464154	96	3.7	96	98	0	674	30	16	25	27	1.97
20466588--20466626	18	2.2	18	85	0	51	38	10	30	20	1.86
20470113--20470140	5	5.6	5	100	0	56	21	0	0	78	0.75
20470180--20470265	42	2.0	42	97	0	163	34	9	22	33	1.86
20479216--20479261	24	1.9	24	90	0	74	71	2	0	26	0.97
20479218--20479269	15	3.6	15	78	17	65	73	1	0	25	0.94
20479218--20479269	14	3.6	14	73	21	54	73	1	0	25	0.94
20487657--20487698	21	2.0	21	90	4	66	2	21	0	76	0.90
20487657--20487711	27	2.0	28	82	10	69	3	20	3	72	1.15
20491163--20491281	49	2.4	49	81	4	123	15	24	36	23	1.94
20495331--20495481	43	3.5	42	76	2	140	29	13	22	34	1.92
20497317--20497379	31	2.0	31	96	0	117	34	12	23	28	1.92
20511507--20511601	27	3.4	28	86	2	120	25	12	29	32	1.93
20511532--20511614	27	3.0	27	85	5	87	28	12	26	32	1.92
20511680--20511745	29	2.3	29	89	5	98	28	10	30	30	1.90
20513327--20513384	22	2.6	22	81	7	64	41	17	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20513363--20513468	18	5.8	19	84	8	157	37	14	11	36	1.82
20513366--20513468	37	2.8	37	86	5	147	38	13	11	35	1.81
20513863--20514031	87	1.9	87	82	4	207	28	22	16	31	1.96
20513753--20514240	261	1.9	261	87	2	721	28	23	15	32	1.95
20514097--20514844	200	3.7	201	91	1	1187	29	21	17	30	1.97
20515788--20515843	7	7.7	7	77	15	60	0	14	0	85	0.59
20515788--20515842	6	8.8	6	79	20	60	0	14	0	85	0.60
20515788--20515843	21	2.5	22	85	8	78	0	14	0	85	0.59
20515788--20515845	15	4.0	14	82	12	73	0	15	0	84	0.62
20515789--20515855	15	4.6	14	79	15	57	0	16	0	83	0.64
20515788--20515853	21	3.2	20	74	22	66	0	16	0	83	0.65
20517878--20518329	39	11.5	39	82	2	429	28	26	22	21	1.99
20517939--20518327	158	2.5	158	91	0	625	28	27	22	22	1.99
20517939--20518346	79	5.2	80	82	1	482	27	26	22	22	1.99
20517842--20518346	119	4.3	118	84	0	587	29	26	22	22	1.99
20522037--20522208	46	3.8	46	73	17	151	29	30	19	20	1.97
20522044--20522213	90	1.9	91	87	3	252	28	30	20	20	1.97
20522366--20522477	45	2.5	45	98	0	215	31	26	21	20	1.98
20522138--20522636	268	1.9	266	93	3	860	27	26	17	29	1.97
20524745--20524800	23	2.4	23	96	0	103	14	41	12	32	1.83
20529544--20529622	30	2.6	31	80	11	92	13	16	13	55	1.69
20529553--20529632	15	5.4	15	75	12	76	12	16	12	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20533934--20533983	14	3.6	14	81	7	57	64	4	12	20	1.43
20533963--20534203	76	3.2	75	85	5	301	34	20	16	28	1.95
20534193--20534220	14	2.0	14	100	0	56	57	7	21	14	1.61
20534113--20534361	90	2.8	88	85	8	346	36	20	17	26	1.94
20534288--20534429	72	2.0	73	91	1	232	38	22	15	23	1.92
20534404--20534734	184	1.9	181	81	8	419	34	22	15	27	1.94
20534693--20534959	72	3.6	72	88	4	390	30	23	16	29	1.96
20543533--20543712	30	6.0	30	90	0	270	22	3	47	26	1.67
20543533--20543712	60	3.0	60	95	0	306	22	3	47	26	1.67
20544053--20544126	21	3.3	21	65	17	58	51	12	12	24	1.73
20544034--20544126	47	2.0	47	97	0	177	49	12	12	24	1.76
20546924--20546981	22	2.6	22	81	7	64	41	17	5	36	1.72
20546960--20547082	19	6.8	19	80	10	159	36	14	12	36	1.84
20546960--20547082	54	2.3	54	92	0	201	36	14	12	36	1.84
20546960--20547079	35	3.3	36	80	6	145	36	15	12	35	1.85
20548055--20548270	45	4.6	48	79	11	209	29	19	30	21	1.97
20550007--20550073	28	2.4	28	87	5	91	29	14	23	31	1.95
20561057--20561083	11	2.5	11	100	0	54	25	29	25	18	1.98
20565489--20565850	49	7.7	46	74	14	212	27	19	29	23	1.98
20566992--20567031	21	2.0	20	85	5	53	10	37	27	25	1.88
20580278--20580315	19	2.0	19	94	0	67	28	26	10	34	1.90
20586892--20586916	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20586914--20586994	41	2.0	40	97	0	144	43	4	18	32	1.71
20587098--20587123	12	2.2	12	100	0	52	76	0	7	15	0.99
20587119--20587173	15	3.7	15	76	13	51	70	3	21	3	1.18
20587105--20587199	26	3.6	25	71	19	70	72	2	21	4	1.12
20590038--20590078	17	2.4	17	95	0	73	41	2	4	51	1.36
20600672--20600719	24	2.0	25	91	4	80	66	2	2	29	1.14
20601095--20601127	16	2.0	17	88	5	50	48	12	6	33	1.65
20603618--20603923	82	3.7	82	100	0	612	38	11	14	36	1.81
20609810--20609851	18	2.3	19	88	8	61	40	0	4	54	1.21
20609815--20609873	20	2.9	21	80	14	61	38	3	3	54	1.34
20609810--20609864	20	2.8	20	84	10	62	40	1	3	54	1.28
20612036--20612258	49	4.6	47	78	5	196	24	22	17	35	1.95
20611999--20612255	98	2.6	97	80	9	265	22	22	16	37	1.94
20612040--20612258	98	2.2	97	82	11	270	24	23	16	35	1.95
20614793--20614830	18	2.1	18	90	0	58	0	26	0	73	0.83
20622910--20622951	20	2.1	20	86	8	59	33	0	9	57	1.31
20625324--20625359	19	1.9	18	88	5	54	2	11	22	63	1.39
20628463--20628498	10	3.5	10	96	3	63	86	2	11	0	0.68
20636162--20636985	2	412.0	2	100	0	1648	50	0	50	0	1.00
20637603--20637659	27	2.2	27	81	6	73	45	0	3	50	1.18
20646063--20646167	40	2.6	40	77	7	104	28	15	26	29	1.96
20650492--20650544	26	2.0	27	85	7	74	24	15	22	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20652033--20652114	26	3.2	26	94	0	146	36	25	8	29	1.86
20658548--20658600	26	2.0	27	85	7	74	24	15	22	37	1.92
20659994--20660256	40	6.6	40	87	3	307	26	27	20	25	1.99
20660188--20660265	40	1.9	41	82	10	97	26	28	21	23	1.99
20663253--20663308	26	2.2	26	96	0	103	37	26	5	30	1.79
20664111--20664141	15	2.0	16	93	6	55	32	0	35	32	1.58
20667850--20667888	21	1.9	20	89	5	60	48	20	0	30	1.50
20673486--20673595	43	2.6	43	84	7	136	25	15	27	31	1.96
20673451--20673595	43	3.4	43	76	8	134	23	15	28	33	1.95
20676392--20676458	30	2.2	30	94	0	116	23	31	23	20	1.98
20687154--20687183	14	2.1	15	93	6	53	20	10	13	56	1.65
20689407--20689732	174	1.9	174	95	0	589	31	23	14	30	1.94
20689687--20689762	29	2.6	29	83	12	102	30	27	13	28	1.94
20692266--20692327	32	2.0	30	93	6	90	25	32	12	25	1.92
20697461--20697622	81	2.0	81	100	0	324	33	11	28	27	1.91
20697605--20697806	45	4.6	45	89	5	279	23	22	30	24	1.99
20704029--20704166	40	3.5	40	84	4	156	22	24	28	23	1.99
20716486--20716667	40	4.6	40	88	0	267	24	22	27	25	2.00
20723593--20723671	23	3.4	24	77	8	83	34	17	25	22	1.96
20727918--20727971	27	2.0	27	85	0	72	40	7	14	37	1.74
20728217--20728400	50	3.7	49	83	5	201	27	17	25	29	1.97
20730133--20730167	14	2.5	14	90	0	52	45	2	17	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20731229--20731255	14	1.9	14	100	0	54	48	7	7	37	1.59
20733539--20733580	22	1.9	22	85	9	59	30	0	38	30	1.58
20755682--20755800	56	2.1	56	85	1	168	37	24	11	26	1.90
20755815--20756354	84	6.4	85	87	3	645	31	23	17	26	1.97
20755871--20756354	252	1.9	252	87	2	713	33	23	16	26	1.96
20758985--20759050	28	2.4	26	73	16	71	16	21	22	39	1.92
20774929--20775038	44	2.5	43	82	4	123	25	27	20	27	1.99
20779016--20779041	12	2.2	12	100	0	52	46	23	7	23	1.78
20785411--20785520	42	2.6	43	78	11	127	26	25	20	28	1.99
20787042--20787318	48	5.7	48	76	6	168	27	18	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167