genome.fa.s23.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  99  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32743425--32743568	54	2.7	54	79	6	139	36	12	22	28	1.91
32743787--32743841	27	2.0	27	100	0	110	29	25	7	38	1.83
32743956--32744250	54	5.5	54	75	2	225	37	15	22	24	1.93
32743956--32744250	108	2.7	107	77	4	270	37	15	22	24	1.93
32744461--32744504	19	2.4	18	88	7	70	43	13	2	40	1.57
32744569--32744614	15	3.0	15	83	3	56	50	36	6	6	1.54
32744589--32744629	15	2.5	17	84	7	50	48	43	4	2	1.37
32745093--32745134	19	2.3	18	87	4	57	26	2	2	69	1.13
32745666--32745715	25	2.0	25	96	0	91	34	8	22	36	1.83
32749285--32749500	40	5.6	40	89	5	313	22	22	27	28	1.99
32759240--32760141	40	22.6	40	98	0	1709	20	22	25	31	1.98
32769659--32769883	46	4.9	46	90	1	317	40	14	23	21	1.90
32775346--32775551	40	5.2	40	85	1	254	23	21	27	28	1.99
32776926--32777521	206	2.9	206	96	0	1095	28	19	23	28	1.98
32781985--32782068	42	2.0	42	92	0	141	46	13	10	29	1.76
32782096--32782139	19	2.4	18	85	7	61	43	11	2	43	1.53
32782190--32782338	54	2.8	54	79	7	144	38	14	18	28	1.89
32782334--32782469	54	2.5	54	80	4	139	39	16	17	25	1.91
32782382--32782501	54	2.2	54	82	2	134	36	15	19	29	1.92
32785700--32785724	5	5.0	5	100	0	50	80	0	0	20	0.72
32787037--32787066	12	2.5	12	88	0	51	6	13	43	36	1.70
32789808--32789917	39	2.8	38	73	1	103	42	21	6	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32793246--32793285	21	2.0	20	85	5	53	37	0	20	42	1.52
32795097--32795130	12	2.8	12	90	4	50	70	0	29	0	0.87
32795953--32795978	6	4.3	6	100	0	52	19	19	15	46	1.85
32802025--32802134	26	4.2	26	92	0	166	35	24	5	34	1.79
32809120--32809409	40	7.3	40	95	0	474	23	20	29	26	1.99
32812642--32812754	42	2.7	42	73	14	106	27	22	26	23	1.99
32820957--32821139	40	4.6	39	81	6	170	24	20	27	26	1.99
32820993--32821174	79	2.3	80	79	3	190	26	20	27	25	1.99
32832101--32832263	38	4.2	38	84	1	191	24	22	23	29	1.99
32832101--32832264	76	2.1	78	84	3	215	24	22	23	29	1.99
32832257--32832384	46	2.9	44	86	7	163	22	21	30	25	1.99
32837759--32837921	38	4.2	38	84	1	173	23	19	24	32	1.98
32837772--32837916	76	1.9	76	84	0	191	24	19	23	33	1.97
32837913--32838041	45	3.0	43	83	8	140	24	20	29	24	1.99
32839276--32839434	52	3.2	52	79	11	154	28	26	18	27	1.98
32846234--32846731	132	3.8	132	78	6	474	30	19	23	26	1.98
32846235--32846731	261	1.9	262	82	4	617	30	19	23	26	1.98
32846630--32846918	89	3.2	89	74	6	287	31	20	21	27	1.98
32846583--32846915	179	1.9	178	88	0	504	32	18	21	27	1.97
32848656--32848885	50	4.7	49	76	6	203	30	25	16	26	1.97
32849139--32849192	27	2.0	27	85	0	72	38	14	7	38	1.75
32850512--32850790	97	2.9	96	79	1	326	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32857397--32857426	15	2.0	15	93	0	51	23	40	23	13	1.90
32857462--32857501	18	2.3	17	86	4	53	20	42	25	12	1.86
32860198--32860308	56	2.0	56	83	3	143	35	13	15	36	1.87
32867463--32867496	14	2.6	13	86	13	52	20	2	0	76	0.92
32868223--32868265	18	2.3	18	88	4	59	39	16	20	23	1.92
32868248--32868349	45	2.3	45	87	3	143	41	18	18	21	1.91
32868858--32869028	5	34.2	5	100	0	342	60	0	0	39	0.97
32875102--32875144	21	2.0	21	86	0	59	27	20	23	27	1.99
32876839--32876869	16	1.9	16	93	0	53	29	16	12	41	1.85
32876991--32877073	3	29.3	3	74	16	79	1	28	1	68	1.04
32876978--32877029	22	2.5	22	84	12	65	3	25	0	71	1.03
32876991--32877070	37	2.2	36	88	6	117	1	28	1	68	1.05
32876992--32877073	17	4.7	17	78	10	85	1	29	1	68	1.05
32878110--32878179	36	1.9	37	88	2	106	48	1	4	45	1.30
32878110--32878187	37	2.1	36	85	2	102	48	2	3	44	1.34
32885015--32885041	13	2.1	13	100	0	54	25	7	0	66	1.17
32896088--32896147	27	2.3	26	80	11	61	40	5	1	53	1.33
32898074--32898115	21	2.0	21	86	9	59	45	0	2	52	1.13
32898105--32898162	21	2.8	21	80	15	59	58	3	0	37	1.15
32898105--32898149	20	2.3	20	85	11	58	55	4	0	40	1.20
32898130--32898170	21	2.0	21	90	0	64	68	0	0	31	0.90
32898252--32898293	19	2.2	19	86	0	57	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32898474--32898543	28	2.4	28	82	15	81	34	2	1	61	1.20
32908675--32908779	55	1.9	55	92	0	174	33	17	12	37	1.87
32912662--32912733	35	2.1	35	97	0	135	45	26	2	25	1.67
32918781--32918916	58	2.4	58	86	5	179	44	0	2	52	1.21
32919085--32919137	16	3.3	16	89	0	79	28	24	7	39	1.82
32928798--32928824	12	2.2	12	100	0	54	85	0	0	14	0.61
32933092--32933131	5	8.8	5	79	20	52	67	0	17	15	1.23
32933085--32933127	13	3.3	13	84	15	54	69	0	13	16	1.19
32933092--32933131	9	4.4	10	84	15	52	67	0	17	15	1.23
32934498--32934545	5	9.2	5	88	6	51	37	0	25	37	1.56
32934498--32934534	11	3.5	11	88	7	58	37	0	21	40	1.54
32934954--32935328	45	8.3	45	92	0	597	18	18	22	40	1.92
32935495--32935698	72	2.8	72	80	7	202	36	11	14	36	1.83
32935496--32935778	18	15.3	18	70	12	144	36	12	14	36	1.84
32940843--32940904	21	3.0	21	90	4	101	14	25	19	40	1.90
32942107--32942153	21	2.2	21	84	0	67	25	27	31	14	1.95
32945726--32945787	25	2.4	26	89	10	92	9	4	8	77	1.12
32946799--32946847	5	9.6	5	93	2	80	44	18	0	36	1.50
32947476--32947510	6	5.5	6	87	12	52	0	22	0	77	0.78
32947474--32947510	12	2.8	14	88	12	60	0	24	0	75	0.80
32947615--32947650	18	1.9	19	88	5	56	41	5	5	47	1.50
32948120--32948160	21	2.0	21	85	0	55	29	12	2	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32957012--32957053	13	3.5	13	78	18	54	50	11	0	38	1.40
32957012--32957055	23	1.9	23	95	0	79	50	11	0	38	1.39
32957013--32957062	23	2.2	23	88	0	73	52	12	0	36	1.39
32957859--32958315	115	4.0	115	92	1	692	45	7	11	35	1.69
32958591--32958620	13	2.3	13	100	0	60	33	0	0	66	0.92
32961620--32961999	190	2.0	190	100	0	760	37	13	4	43	1.65
32961668--32961956	92	3.1	92	62	21	227	37	12	5	44	1.65
32965905--32965935	16	1.9	16	93	0	53	70	9	9	9	1.33
32969496--32969552	25	2.2	24	84	9	69	64	0	0	35	0.93
32969495--32969547	15	3.6	14	78	12	52	66	0	0	33	0.92
32971760--32971838	39	2.0	39	97	0	149	15	11	25	48	1.78
32973257--32973313	1	57.0	1	89	0	87	0	0	5	94	0.30
32974291--32974346	27	2.1	27	100	0	112	19	17	14	48	1.81
32975949--32975991	21	2.0	21	100	0	86	51	13	13	20	1.76
32980287--32980502	108	2.0	108	90	0	342	19	15	27	37	1.92
32982023--32982216	94	2.1	94	92	0	318	27	11	24	37	1.89
32986441--32986489	10	4.9	10	80	9	64	22	6	2	69	1.21
32986442--32986489	20	2.4	20	89	6	71	22	6	2	68	1.23
32992852--32992902	8	6.5	8	90	4	77	31	0	0	68	0.90
32992851--32992899	3	17.3	3	76	19	52	30	0	0	69	0.89
32994080--32994265	99	1.9	101	83	2	250	29	13	25	32	1.94
32994869--32994906	13	2.8	13	88	4	58	42	0	13	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32994921--32994991	10	6.9	10	76	17	65	21	11	2	64	1.38
32994916--32994958	22	2.0	22	100	0	86	18	16	4	60	1.52
32998458--32998525	34	2.0	34	82	5	84	29	22	25	23	1.99
33004448--33004507	28	2.1	27	82	11	68	33	8	10	48	1.67
33005265--33005323	27	2.2	25	85	8	73	49	5	5	40	1.47
33006291--33006319	14	2.0	15	93	6	51	31	0	0	68	0.89
33006332--33006380	22	2.3	20	77	16	53	32	0	4	63	1.13
33009011--33009202	106	1.8	104	81	8	235	50	12	6	31	1.65
33009288--33009324	16	2.2	17	90	4	58	81	5	0	13	0.86
33009537--33009578	19	2.2	19	86	0	57	59	2	2	35	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167