genome.fa.s23.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  157  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51769554--51769596	22	2.0	22	90	0	68	23	13	6	55	1.62
51769626--51769688	30	2.1	30	93	0	108	25	3	14	57	1.52
51769770--51769810	18	2.2	18	86	8	55	24	0	9	65	1.22
51775708--51775746	18	2.1	18	85	4	51	33	2	28	35	1.71
51776315--51776352	15	2.5	15	95	0	67	23	13	15	47	1.81
51778138--51778223	22	4.0	21	76	7	82	61	3	13	20	1.47
51778140--51778222	11	7.5	11	78	5	71	61	3	13	21	1.47
51779297--51779339	21	2.0	21	86	8	61	25	13	6	53	1.65
51780157--51780210	22	2.4	22	84	3	63	59	12	12	14	1.62
51780665--51780732	31	2.2	31	89	0	100	27	30	16	25	1.96
51780831--51781097	35	7.6	35	84	0	311	32	25	13	28	1.94
51780837--51781097	105	2.5	105	85	1	344	32	25	14	28	1.94
51788077--51788112	12	3.0	12	95	0	63	27	25	5	41	1.77
51796446--51796613	73	2.3	73	86	2	219	28	17	20	33	1.95
51796593--51796654	14	4.6	14	90	6	92	16	14	6	62	1.50
51796525--51796752	114	2.0	114	88	0	339	23	17	17	42	1.89
51796607--51796916	99	3.2	97	83	8	359	26	16	16	40	1.90
51796842--51797099	74	3.5	70	86	5	345	30	16	21	31	1.95
51796842--51797138	75	4.0	73	85	5	384	28	17	20	32	1.95
51797120--51797147	14	2.0	14	100	0	56	14	21	7	57	1.61
51797062--51797375	92	3.4	92	100	0	628	27	19	20	33	1.96
51797212--51797239	14	2.0	14	100	0	56	14	21	7	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51797304--51797331	14	2.0	14	100	0	56	14	21	7	57	1.61
51797337--51797518	75	2.5	74	88	1	267	31	14	22	30	1.94
51797597--51797704	54	2.0	55	88	1	164	28	13	19	37	1.90
51797393--51797773	128	3.0	127	84	5	525	28	14	20	35	1.93
51797654--51798007	73	4.7	73	81	6	431	29	16	22	32	1.95
51797650--51798044	75	5.3	73	79	7	420	28	16	21	34	1.95
51797654--51798044	152	2.6	147	83	7	464	28	16	21	33	1.95
51798038--51798072	17	2.1	17	88	0	52	17	8	2	71	1.23
51797950--51798160	106	2.0	106	86	1	298	22	16	17	44	1.86
51800841--51800883	18	2.3	18	92	4	68	53	11	9	25	1.67
51806319--51806353	17	2.1	17	89	10	54	34	11	0	54	1.37
51812539--51812581	22	2.0	22	86	9	61	39	6	0	53	1.28
51817164--51817213	25	2.0	25	92	7	84	32	6	26	36	1.81
51818015--51818055	20	2.1	19	90	4	64	39	2	17	41	1.62
51820686--51820736	26	2.0	26	84	7	68	37	5	25	31	1.80
51820961--51821004	21	2.1	21	82	0	52	36	0	4	59	1.18
51821009--51821081	19	3.7	19	75	18	53	31	0	5	63	1.17
51821740--51821778	18	2.1	19	90	4	62	30	15	5	48	1.66
51823136--51823175	19	2.1	19	85	0	53	25	35	17	22	1.95
51824292--51824334	12	3.6	12	78	9	52	79	6	2	11	1.02
51824314--51824343	15	1.9	16	93	6	53	80	6	3	10	1.01
51829567--51829606	19	2.1	19	85	0	53	25	35	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51829635--51829698	32	2.0	32	96	0	119	31	20	15	32	1.94
51829999--51830077	39	2.0	39	95	0	140	25	20	22	31	1.98
51830919--51830966	14	3.4	14	85	0	60	18	31	6	43	1.75
51834575--51834651	40	1.9	40	91	0	127	28	12	32	25	1.93
51836123--51836168	21	2.2	21	84	0	56	54	10	8	26	1.64
51839046--51839081	3	11.7	3	94	5	63	30	0	0	69	0.89
51839046--51839078	16	2.1	16	100	0	66	30	0	0	69	0.88
51839046--51839083	19	2.0	19	100	0	76	31	0	0	68	0.90
51839346--51839544	99	2.0	99	99	0	389	18	39	16	26	1.91
51846819--51846885	29	2.3	27	78	14	71	38	13	10	37	1.79
51847998--51848045	20	2.4	19	77	16	53	66	4	0	29	1.10
51848025--51848078	23	2.3	23	79	17	67	59	3	1	35	1.26
51850112--51850157	14	3.2	14	77	22	51	26	2	2	69	1.11
51850113--51850156	23	1.9	23	85	0	61	27	2	2	68	1.14
51854612--51854676	27	2.3	29	79	12	73	61	1	3	33	1.21
51856729--51856783	29	2.0	27	86	13	76	47	20	0	32	1.50
51857509--51857558	19	2.6	19	93	3	82	10	12	8	70	1.35
51889642--51889694	22	2.3	23	75	12	56	49	7	15	28	1.71
51899018--51899043	7	3.7	7	100	0	52	11	0	0	88	0.52
51901558--51901722	82	2.0	83	90	4	264	32	4	13	49	1.63
51902112--51902163	19	2.5	20	78	9	52	67	3	1	26	1.18
51909084--51909123	11	3.6	11	79	0	53	27	12	2	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51913941--51913981	21	2.0	21	90	0	64	29	21	29	19	1.98
51915887--51915920	16	2.1	16	88	0	50	50	14	17	17	1.79
51924442--51924481	13	3.2	13	80	20	50	2	15	0	82	0.77
51927785--51927815	15	2.1	15	100	0	62	48	19	12	19	1.81
51928180--51928269	45	2.0	45	86	4	128	44	15	15	24	1.85
51932225--51932263	20	2.0	20	85	10	53	41	0	5	53	1.23
51934274--51934355	40	2.0	40	81	9	96	53	8	4	32	1.53
51940421--51940693	136	2.0	136	98	0	528	26	6	26	40	1.80
51941761--51941997	40	5.9	40	92	0	393	25	20	28	25	1.99
51945080--51945132	26	2.0	26	100	0	106	37	30	7	24	1.83
51956486--51956670	79	2.3	81	81	8	218	25	27	22	24	2.00
51956467--51956670	40	5.1	40	82	5	227	25	27	22	25	2.00
51957048--51957104	25	2.5	23	81	15	66	8	19	1	70	1.23
51962816--51962923	54	2.0	54	96	0	198	38	10	8	42	1.69
51966571--51966688	23	5.0	24	86	11	163	28	21	21	28	1.98
51966737--51966803	20	3.3	20	93	0	116	32	20	11	34	1.90
51966737--51966792	11	5.5	11	71	16	57	32	19	12	35	1.89
51966840--51966887	25	1.9	25	86	0	69	25	16	25	33	1.96
51976553--51976900	40	8.7	40	99	0	687	30	20	27	21	1.98
51984530--51984564	16	2.2	16	100	0	70	40	5	25	28	1.78
51985288--51985475	40	4.7	40	92	0	313	30	20	27	21	1.98
51987377--51987410	17	1.9	18	88	5	52	76	0	14	8	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51990522--51990554	9	3.7	9	100	0	66	21	24	12	42	1.86
51995353--51995405	26	2.0	26	92	0	88	28	28	7	35	1.84
51996382--51996419	3	12.7	3	100	0	76	0	31	0	68	0.90
51997657--51997728	5	14.4	5	76	5	74	37	20	4	37	1.72
52001333--52001477	40	3.6	41	80	9	140	26	26	21	25	1.99
52003254--52003284	16	1.9	16	93	0	53	25	16	6	51	1.68
52010058--52010190	7	19.7	7	76	11	109	30	27	1	40	1.65
52010058--52010211	14	11.4	14	75	8	113	32	27	1	38	1.65
52010078--52010225	21	7.0	21	73	10	97	32	26	1	39	1.65
52010058--52010226	35	5.0	33	77	10	137	32	26	1	39	1.64
52010160--52010218	7	8.4	7	87	7	68	38	27	0	33	1.57
52010249--52010287	20	2.0	20	85	10	53	23	10	2	64	1.37
52021758--52021789	13	2.5	13	89	0	55	9	9	43	37	1.69
52022965--52023006	18	2.2	20	84	16	54	61	4	2	30	1.29
52027632--52027708	38	2.0	38	97	0	145	41	23	20	14	1.89
52027976--52028086	55	2.0	55	83	0	141	27	26	25	20	1.99
52030651--52030830	90	2.0	90	97	0	342	31	15	23	28	1.95
52031079--52031210	66	2.0	66	98	0	255	39	12	21	26	1.89
52033345--52033518	52	3.4	51	81	4	192	31	28	14	25	1.95
52039701--52039806	42	2.5	42	79	0	131	33	16	21	29	1.95
52044017--52044107	45	2.0	45	91	0	146	36	23	14	26	1.93
52046502--52046602	44	2.3	44	82	3	114	34	24	13	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52047028--52047203	88	2.0	88	98	0	343	29	28	6	34	1.83
52056760--52056795	18	1.9	19	88	5	56	41	0	5	52	1.24
52075969--52076005	16	2.3	16	95	0	65	56	13	16	13	1.67
52076237--52076351	29	4.0	29	80	5	135	28	12	31	27	1.92
52080741--52080825	29	3.0	28	76	8	82	30	15	30	23	1.95
52085189--52085263	37	2.0	37	97	0	141	41	22	16	20	1.90
52086920--52086982	27	2.4	26	82	12	67	52	0	6	41	1.27
52086959--52087100	31	4.5	31	74	9	108	52	2	4	40	1.35
52087018--52087087	33	2.1	33	83	0	86	51	4	4	40	1.41
52087538--52087588	21	2.6	21	87	12	65	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167