genome.fa.s23.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  137  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45871035--45871094	30	2.0	30	100	0	120	23	13	16	46	1.82
45871205--45871327	43	2.9	43	79	9	126	28	17	26	28	1.97
45874288--45874508	40	5.6	41	82	8	271	24	22	25	27	2.00
45874736--45874777	22	1.9	22	85	9	59	33	9	14	42	1.78
45876535--45876587	28	1.9	28	88	3	81	45	0	11	43	1.40
45876531--45876593	27	2.3	26	73	10	63	41	0	9	49	1.35
45876589--45876620	10	3.3	10	95	4	57	31	6	0	62	1.20
45880308--45880387	7	11.4	7	79	18	53	16	3	0	80	0.86
45881333--45881798	118	3.9	118	97	0	860	23	16	30	28	1.96
45889426--45889484	21	2.9	21	94	2	102	11	42	28	16	1.84
45889715--45890944	153	8.1	153	80	6	1187	36	17	11	34	1.86
45889715--45890982	307	4.2	304	81	5	1314	36	17	10	34	1.85
45889715--45890745	460	2.2	459	83	2	1309	36	17	11	34	1.86
45895642--45895905	132	2.0	129	89	6	406	30	12	8	48	1.71
45899259--45899308	23	2.2	23	88	0	73	58	16	2	24	1.49
45906803--45906852	16	3.2	16	94	2	84	6	30	52	12	1.62
45906999--45907033	12	3.0	12	87	4	54	31	0	0	68	0.90
45907034--45907071	18	2.1	18	85	9	51	65	15	0	18	1.27
45907170--45907214	20	2.2	21	84	7	58	68	8	0	22	1.16
45907243--45907282	11	3.6	11	82	0	53	60	10	10	20	1.57
45911370--45911412	19	2.2	19	83	8	50	41	2	11	44	1.53
45920758--45920824	21	3.2	20	70	16	55	19	22	17	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45920771--45920836	21	3.2	20	67	16	53	15	25	18	40	1.89
45924442--45924534	27	3.6	26	85	8	120	29	13	26	30	1.95
45924459--45924531	28	2.6	28	89	2	112	30	12	23	34	1.91
45926094--45926145	25	2.1	25	88	0	77	36	7	15	40	1.76
45926774--45926816	18	2.4	18	96	0	77	46	2	0	51	1.13
45926806--45926850	13	3.5	13	77	22	58	40	0	0	60	0.97
45926802--45926866	26	2.4	27	92	5	105	36	1	1	60	1.16
45931760--45931849	23	4.0	23	77	7	78	22	17	20	40	1.92
45935875--45935925	25	2.0	25	84	0	66	39	7	11	41	1.71
45936556--45936583	10	2.8	10	100	0	56	10	10	7	71	1.31
45939619--45939902	43	6.6	43	94	0	496	29	32	26	11	1.91
45939895--45940018	38	3.2	38	89	2	167	27	27	23	21	1.99
45945947--45946180	50	4.6	51	75	7	188	32	18	24	23	1.97
45948495--45948574	41	1.9	42	90	7	128	21	31	25	22	1.98
45949321--45949369	6	8.2	6	93	0	80	51	16	16	16	1.78
45951745--45951807	30	2.1	30	91	5	101	55	11	4	28	1.55
45960538--45960635	49	2.0	48	98	2	187	52	2	6	39	1.38
45975731--45975838	26	4.2	26	91	0	180	32	8	24	35	1.85
45978814--45978908	24	4.0	23	75	15	77	21	17	18	42	1.90
45980658--45980902	136	1.8	136	84	0	337	35	13	15	35	1.87
45981624--45981681	25	2.3	25	85	5	73	63	1	0	34	1.04
45981804--45981865	25	2.5	26	86	5	83	35	1	1	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45981857--45981919	22	2.9	21	82	17	83	39	0	1	58	1.07
45981942--45981982	21	2.0	21	85	9	57	39	0	2	58	1.11
45981939--45982002	19	3.2	20	75	16	60	34	0	3	62	1.11
45982985--45983144	82	2.0	82	88	5	243	39	16	9	34	1.81
45983145--45983169	7	3.6	7	100	0	50	0	0	12	88	0.53
45983435--45983465	16	1.9	16	93	0	53	29	0	6	64	1.18
45989506--45989847	45	7.6	45	68	14	199	28	21	23	25	1.99
45989502--45989989	135	3.6	134	92	3	745	29	21	22	26	1.99
45991593--45991625	14	2.4	14	100	0	66	27	0	0	72	0.85
45991583--45991627	23	2.0	23	86	8	65	26	2	0	71	0.98
46004362--46004438	38	2.0	38	97	0	145	24	28	6	40	1.80
46005440--46005780	50	6.8	50	79	1	349	29	25	19	25	1.98
46005492--46005776	101	2.8	101	92	0	471	30	26	18	24	1.98
46005441--46005780	151	2.3	151	83	1	403	29	25	19	25	1.98
46007756--46007857	27	3.8	27	88	0	150	33	12	26	27	1.93
46015211--46015331	41	2.9	41	79	7	120	32	23	14	29	1.94
46015259--46015399	40	3.5	40	81	8	160	31	25	17	26	1.97
46018316--46018384	34	2.0	34	88	0	102	34	20	8	36	1.83
46021387--46021508	43	2.8	43	85	3	165	25	13	27	33	1.94
46023092--46023414	162	2.0	162	96	0	592	24	21	20	33	1.97
46027577--46027625	24	2.0	25	88	4	73	59	6	2	32	1.34
46029374--46029445	36	2.0	35	94	2	126	44	8	22	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46035301--46035484	40	4.7	40	79	11	200	25	27	21	25	2.00
46035301--46035484	79	2.3	82	81	12	215	25	27	21	25	2.00
46039229--46039331	52	2.0	52	100	0	206	34	25	10	29	1.89
46046421--46046453	11	3.1	11	82	8	50	33	18	21	27	1.96
46046568--46046698	47	2.7	47	85	8	167	22	16	28	33	1.95
46054001--46054101	44	2.3	44	79	5	107	33	25	12	27	1.93
46057223--46057252	16	1.9	16	93	6	53	10	13	3	73	1.21
46059854--46059882	12	2.4	12	100	0	58	24	34	0	41	1.55
46071105--46071138	17	2.1	15	89	10	50	67	2	0	29	1.05
46074881--46075138	55	4.9	54	76	11	230	35	18	24	21	1.95
46074889--46075089	108	1.8	110	85	6	284	34	19	23	22	1.97
46075327--46075357	16	1.9	16	93	0	53	41	0	22	35	1.54
46079149--46079188	21	2.0	20	90	5	62	42	22	0	35	1.54
46082970--46083010	22	1.9	21	90	5	64	41	19	12	26	1.87
46086757--46086795	19	2.0	20	90	5	62	51	0	15	33	1.44
46088787--46088839	27	2.0	27	100	0	106	28	30	15	26	1.96
46093524--46093565	14	2.9	15	79	13	52	40	2	19	38	1.64
46095263--46095314	27	2.0	26	84	3	68	34	21	26	17	1.95
46110294--46110420	45	2.9	45	85	8	147	24	29	22	23	1.99
46110737--46110860	43	2.9	42	91	3	203	29	31	25	14	1.95
46110853--46110936	38	2.2	38	86	0	123	32	25	20	22	1.98
46119852--46119921	33	2.3	31	83	11	90	31	2	1	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46120038--46120077	22	1.9	22	85	10	57	37	5	7	50	1.53
46124345--46124525	40	4.6	40	84	4	206	24	22	24	28	2.00
46124345--46124550	40	5.2	39	82	4	186	24	22	24	28	2.00
46137042--46137169	64	2.0	64	92	0	211	32	19	14	34	1.91
46137413--46138537	88	12.8	88	92	1	1625	31	20	23	24	1.98
46138303--46138447	44	3.3	44	70	7	141	31	21	24	22	1.98
46138329--46138463	44	3.1	44	70	8	148	33	20	23	22	1.97
46138347--46138491	44	3.3	43	72	7	139	33	24	23	19	1.97
46138819--46138994	44	4.0	43	74	10	158	28	21	22	27	1.99
46139701--46139747	22	2.2	21	85	11	60	17	12	6	63	1.48
46146482--46146521	19	2.1	19	85	0	53	45	10	7	37	1.66
46151538--46151612	24	3.2	24	69	16	59	45	14	13	26	1.82
46152130--46152313	42	4.4	42	88	0	224	20	35	21	22	1.96
46156034--46156154	37	3.2	37	82	3	145	37	28	15	18	1.91
46163858--46163988	65	2.0	66	98	1	255	38	6	9	45	1.61
46164323--46164372	26	2.0	25	88	11	75	40	12	4	44	1.60
46164942--46164987	23	2.0	23	86	0	65	32	28	26	13	1.93
46169073--46169109	20	1.9	19	89	10	58	8	27	16	48	1.74
46191586--46191619	6	5.5	6	96	3	59	14	2	0	82	0.79
46196965--46197022	29	2.0	29	100	0	116	55	0	13	31	1.39
46197607--46197645	18	2.1	19	85	4	53	17	15	0	66	1.25
46205505--46205621	62	1.9	59	86	5	162	52	3	3	41	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46212230--46212318	45	2.0	45	97	0	169	12	17	16	52	1.74
46219771--46219985	40	5.4	40	86	5	242	24	21	28	25	1.99
46219771--46219985	80	2.7	80	88	5	294	24	21	28	25	1.99
46225508--46225549	15	2.8	15	85	0	57	52	11	16	19	1.74
46228514--46228729	38	5.2	38	70	18	171	32	24	13	29	1.94
46228521--46228822	85	3.4	85	87	8	451	32	23	14	30	1.94
46228644--46228872	48	4.8	48	86	1	309	32	21	13	31	1.93
46228650--46228854	95	2.2	95	100	0	410	32	20	14	32	1.93
46235310--46235347	14	2.9	13	81	11	51	57	10	13	18	1.63
46237600--46237745	43	3.4	43	69	13	113	23	21	25	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167