genome.fa.s23.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  51  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15675276--15675453	40	4.5	40	88	3	245	23	26	24	24	2.00
15677421--15677590	88	1.9	88	92	0	286	31	27	4	36	1.78
15677679--15677741	27	2.3	27	86	0	90	28	22	15	33	1.95
15681375--15681412	14	2.7	14	91	0	58	36	7	18	36	1.80
15681396--15681441	19	2.3	20	96	3	85	23	10	17	47	1.79
15685916--15685955	18	2.2	18	86	0	53	62	5	32	0	1.17
15687598--15687955	89	4.0	89	98	0	680	33	22	14	29	1.94
15689376--15689497	43	2.9	42	84	7	158	27	26	16	29	1.97
15691898--15692070	40	4.3	40	89	0	247	32	25	19	23	1.97
15693700--15693731	15	2.0	17	88	11	50	43	31	0	25	1.55
15702751--15702783	17	2.1	17	88	11	52	45	36	0	18	1.49
15706591--15707506	93	9.8	93	98	0	1724	23	18	27	30	1.97
15710438--15710493	15	3.7	15	85	7	78	14	16	8	60	1.57
15712876--15713791	93	9.8	93	98	0	1753	23	18	27	30	1.98
15719617--15719667	26	2.0	25	88	3	75	5	13	0	80	0.89
15730949--15731320	96	3.9	92	96	0	550	33	8	29	29	1.86
15730949--15731320	47	7.8	47	91	3	591	33	8	29	29	1.86
15731439--15731517	37	2.1	37	85	0	113	26	17	29	26	1.98
15735798--15736014	40	5.5	39	88	3	206	25	20	27	25	1.99
15735804--15736012	39	5.3	39	90	4	258	25	21	27	25	1.99
15735752--15736047	80	3.7	79	79	7	246	26	21	27	24	1.99
15743783--15743954	79	2.2	79	84	3	220	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15743730--15743952	40	5.6	39	81	8	209	25	21	27	25	1.99
15743810--15743987	79	2.2	80	80	3	191	25	21	28	24	1.99
15750713--15750769	27	2.1	27	83	0	69	38	14	19	28	1.90
15752721--15752745	13	1.9	13	100	0	50	24	16	36	24	1.94
15753254--15753318	28	2.3	28	94	0	112	33	27	7	30	1.85
15753424--15753513	27	3.2	28	81	7	112	18	24	24	32	1.97
15753434--15753524	27	3.2	28	81	4	94	20	26	20	31	1.98
15753424--15753538	55	2.1	56	82	8	137	18	24	22	34	1.96
15755154--15755383	115	2.0	115	99	0	451	22	17	36	23	1.95
15761222--15761286	28	2.3	28	92	5	105	33	29	7	29	1.85
15761392--15761454	28	2.2	29	88	8	94	22	22	23	31	1.98
15761402--15761465	28	2.2	28	86	2	83	25	25	18	31	1.98
15761918--15761956	19	2.1	19	85	0	51	15	5	7	71	1.26
15762541--15762574	10	3.3	10	84	8	50	29	8	8	52	1.62
15769073--15769137	28	2.3	28	92	5	105	33	29	7	29	1.85
15769243--15769332	28	3.2	27	85	7	119	20	24	23	32	1.98
15769243--15769357	55	2.1	56	83	8	146	19	24	21	34	1.96
15769795--15769833	19	2.1	19	85	0	51	15	5	7	71	1.26
15775378--15775523	25	5.8	25	86	0	184	26	13	10	48	1.76
15776025--15776289	45	6.0	45	85	3	306	25	20	27	26	1.99
15793313--15793458	25	5.8	25	88	0	175	28	13	9	49	1.72
15793313--15793449	50	2.7	50	90	0	211	29	12	9	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15794300--15794477	45	4.0	45	94	0	311	23	22	26	27	1.99
15795326--15795446	43	2.9	42	79	6	120	26	16	23	33	1.96
15795330--15795428	41	2.4	41	79	3	117	28	16	23	32	1.96
15796839--15796928	42	2.1	42	91	0	144	18	26	31	23	1.98
15799376--15799533	43	3.7	42	77	13	162	31	25	17	25	1.97
15801805--15801853	20	2.5	20	93	6	82	18	30	12	38	1.87
15803128--15803241	27	4.2	28	86	5	139	35	20	24	19	1.95
15803128--15803242	55	2.1	55	87	6	164	36	20	24	19	1.95
15805097--15805126	15	2.0	15	93	0	51	76	0	0	23	0.78
15807695--15807867	46	3.7	46	78	13	210	21	21	27	28	1.99
15807692--15807862	93	1.8	93	96	0	315	21	21	28	28	1.99
15809637--15809789	42	3.7	41	81	5	182	30	18	24	26	1.98
15829048--15829072	12	2.1	12	100	0	50	92	0	0	8	0.40
15839878--15839958	39	2.1	39	81	4	92	25	29	22	22	1.99
15839896--15839982	39	2.2	39	87	0	120	26	29	21	21	1.99
15845677--15845879	40	5.1	40	87	2	266	21	24	30	24	1.99
15851084--15851244	84	1.9	83	84	1	214	29	14	24	30	1.95
15851084--15851236	42	3.6	42	78	3	173	30	15	24	30	1.96
15853225--15853265	19	2.2	19	86	8	57	73	0	26	0	0.84
15856698--15856758	31	1.9	32	86	3	88	21	26	19	32	1.97
15857487--15857614	64	2.0	64	93	0	220	23	16	32	28	1.96
15863149--15863220	37	1.9	37	88	0	108	29	31	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15863425--15863571	47	3.1	47	90	0	231	26	29	11	32	1.91
15878448--15878599	42	3.6	43	80	5	141	29	16	26	26	1.97
15878913--15879055	71	2.0	71	97	0	268	23	25	8	43	1.81
15888543--15888576	8	4.1	8	92	3	50	58	23	0	17	1.38
15888543--15888576	17	2.1	16	88	5	50	58	23	0	17	1.38
15892135--15892329	97	2.0	97	94	0	345	42	14	6	36	1.71
15896382--15896454	37	2.0	37	94	0	128	32	8	24	34	1.85
15900261--15900392	42	3.2	41	74	9	124	31	12	26	29	1.93
15902119--15902433	40	7.8	40	85	6	431	24	28	21	25	1.99
15911951--15912079	29	4.5	27	82	10	109	24	31	12	31	1.92
15911968--15912079	29	3.9	29	87	5	140	25	31	14	29	1.94
15911982--15912102	29	4.2	28	86	6	100	26	30	13	29	1.94
15913904--15913964	30	2.0	30	96	0	113	42	16	21	19	1.89
15917923--15918038	46	2.5	45	81	5	126	30	19	28	21	1.98
15925285--15925359	31	2.6	29	82	12	91	70	6	13	9	1.32
15926228--15926262	18	1.9	18	88	11	54	57	0	20	22	1.41
15928940--15929518	292	2.0	292	95	1	1045	21	18	16	43	1.88
15942622--15942666	11	4.0	11	85	5	63	71	11	6	11	1.31
15942625--15942667	12	3.7	12	87	6	61	76	9	4	9	1.14
15942705--15942744	13	3.0	13	96	3	71	60	0	15	25	1.35
15948706--15949005	150	2.0	150	100	0	600	18	17	26	37	1.93
15955270--15955492	40	5.6	40	86	3	245	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15955345--15955527	79	2.3	80	83	1	235	25	20	27	26	1.99
15962507--15962689	40	4.6	39	81	6	161	24	22	27	25	2.00
15962560--15962724	79	2.1	79	80	2	179	25	21	28	24	1.99
15966227--15966451	40	5.7	40	82	4	222	24	21	27	26	2.00
15966302--15966484	79	2.3	80	80	1	208	26	21	26	25	2.00
15973448--15973510	23	2.7	23	71	9	56	31	9	20	38	1.85
15977276--15977353	22	3.4	22	80	7	75	25	24	16	33	1.96
15983503--15983534	15	2.1	15	100	0	64	34	0	31	34	1.58
15987623--15987681	23	2.6	23	86	7	77	27	22	23	27	1.99
15992597--15992629	15	2.3	15	89	5	50	48	21	0	30	1.50
15996291--15996322	17	2.0	17	88	11	50	43	28	15	12	1.83
16004184--16004226	5	7.8	5	80	19	50	20	2	2	74	1.04
16004184--16004226	11	3.8	11	87	6	59	20	2	2	74	1.04
16013464--16013517	19	2.7	20	81	16	58	38	7	1	51	1.41
16013482--16013521	22	1.9	20	89	5	53	37	10	0	52	1.35
16016100--16016361	46	5.6	47	82	11	263	24	31	17	26	1.97
16016142--16016364	94	2.4	90	81	10	254	24	30	19	25	1.98
16015993--16016361	140	2.6	143	79	10	393	24	30	18	26	1.98
16020866--16020914	6	8.0	6	79	4	53	36	16	14	32	1.89
16020857--16020905	25	1.9	26	87	4	73	32	16	12	38	1.86
16045230--16045296	21	3.1	21	82	4	71	34	32	2	29	1.73
16045577--16045606	12	2.4	13	94	5	53	66	0	10	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16045713--16045914	100	2.0	101	97	2	381	35	14	12	36	1.85
16052554--16053042	269	1.8	269	98	0	951	31	11	24	32	1.91
16053056--16053102	22	2.1	22	96	0	85	31	4	40	23	1.74
16060345--16060398	23	2.2	25	78	15	60	62	3	22	11	1.43
16067370--16067409	19	2.1	19	85	0	53	27	32	17	22	1.96
16068657--16068698	14	3.0	14	85	0	57	14	30	7	47	1.71
16068822--16068907	18	5.1	17	74	13	63	4	20	1	73	1.08
16068822--16068883	6	10.3	6	76	0	61	4	20	1	72	1.12
16069808--16069874	33	2.0	34	85	2	91	32	11	4	50	1.59
16070089--16070128	14	2.9	14	88	0	53	50	7	32	10	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167