genome.fa.s23.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  97  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32213888--32214113	100	2.3	100	89	3	276	26	18	26	29	1.98
32216962--32217045	40	2.2	38	84	4	105	28	21	23	26	1.99
32217609--32217687	39	2.0	39	95	0	140	25	13	15	45	1.83
32217611--32217674	21	3.2	21	62	20	55	25	14	12	48	1.78
32219200--32219250	22	2.3	21	80	9	57	45	1	3	49	1.32
32221581--32221751	93	1.8	93	96	0	315	28	29	21	21	1.98
32221573--32221748	46	3.8	46	80	12	225	28	28	21	21	1.98
32225691--32225775	40	2.2	40	84	2	109	28	31	22	17	1.97
32225846--32225954	47	2.3	46	87	7	150	27	29	10	33	1.89
32228310--32228342	4	8.0	4	96	3	57	24	0	3	72	0.98
32228525--32228565	20	2.0	20	85	9	55	46	17	7	29	1.74
32239968--32240000	17	2.0	17	88	5	50	45	3	12	39	1.57
32247168--32247212	20	2.2	20	88	0	63	35	13	2	48	1.54
32249989--32250043	25	2.1	26	87	12	78	76	5	0	18	0.97
32249990--32250043	5	10.6	5	76	11	56	75	5	0	18	0.98
32254077--32254144	34	2.0	34	100	0	136	32	5	20	41	1.76
32255852--32255904	20	2.5	22	84	12	83	22	30	33	13	1.92
32256850--32256886	17	2.2	17	100	0	74	40	29	0	29	1.57
32256932--32256968	19	1.9	19	88	0	56	27	18	8	45	1.77
32257813--32257857	20	2.2	20	84	0	54	37	11	2	48	1.51
32260709--32260752	5	8.8	5	94	0	79	40	2	0	56	1.11
32260769--32260832	21	2.7	22	73	19	58	73	6	18	1	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32261500--32261546	24	2.0	24	84	16	62	31	0	17	51	1.46
32261705--32261835	40	3.4	37	75	13	113	26	19	23	30	1.98
32261745--32261844	40	2.6	39	79	4	114	27	20	25	28	1.99
32265745--32265777	17	1.9	17	93	0	57	3	24	0	72	0.98
32265808--32265854	25	1.9	24	83	12	60	12	10	2	74	1.16
32268273--32268339	29	2.4	26	75	20	64	40	1	2	55	1.24
32268280--32268337	29	2.0	30	83	10	75	43	1	3	51	1.28
32268351--32268387	16	2.3	17	86	13	60	56	0	2	40	1.13
32268407--32268458	19	2.6	20	84	6	61	51	0	0	48	1.00
32271784--32271835	9	5.8	9	95	0	86	23	9	28	38	1.86
32271968--32271992	12	2.1	12	100	0	50	16	24	36	24	1.94
32272014--32272038	13	1.9	13	100	0	50	32	68	0	0	0.90
32278260--32278292	13	2.8	12	90	9	50	60	3	0	36	1.12
32280568--32280602	15	2.3	15	90	0	61	60	0	31	8	1.27
32285728--32286099	186	2.0	186	100	0	744	34	19	8	37	1.82
32286132--32286467	168	2.0	168	100	0	672	34	17	9	38	1.82
32287550--32287610	30	2.0	30	83	0	77	31	22	8	37	1.84
32305987--32306024	18	2.1	19	85	14	53	60	31	5	2	1.33
32312513--32312779	47	5.7	46	76	11	217	22	28	19	29	1.98
32312513--32312776	140	1.9	141	83	7	349	23	28	18	29	1.98
32313174--32313198	9	2.8	9	100	0	50	24	0	20	56	1.43
32317152--32317211	27	2.3	26	82	2	66	23	23	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32320592--32320747	68	2.2	68	77	13	149	20	28	16	34	1.94
32337549--32337896	83	4.2	83	99	0	687	16	25	15	41	1.88
32340238--32340281	20	2.2	20	80	4	54	18	9	2	70	1.24
32351968--32352152	79	2.3	81	84	7	236	25	27	22	24	2.00
32351968--32352152	40	4.7	40	83	7	234	25	27	22	24	2.00
32353780--32353841	31	2.0	31	100	0	124	74	3	12	9	1.19
32357572--32357613	20	2.2	20	86	4	59	14	16	4	64	1.45
32357585--32357715	57	2.3	56	85	4	163	25	21	6	46	1.74
32360151--32360197	16	2.9	16	80	0	58	46	23	21	8	1.78
32360421--32360492	29	2.5	29	88	0	99	23	18	31	26	1.97
32360478--32360507	15	2.0	15	93	0	51	13	16	40	30	1.87
32361578--32361611	18	1.9	18	88	5	52	47	8	14	29	1.75
32369060--32369230	43	4.0	43	83	7	188	24	30	20	24	1.99
32383556--32383642	40	2.2	40	83	4	104	33	28	16	21	1.95
32403278--32403320	21	2.0	22	86	4	61	55	2	20	20	1.54
32411135--32411185	8	6.4	8	88	0	75	41	1	0	56	1.10
32411129--32411177	13	3.9	13	80	20	59	40	0	0	59	0.98
32411138--32411188	16	3.2	16	94	2	86	43	1	0	54	1.11
32411135--32411193	24	2.5	24	86	5	75	42	3	0	54	1.17
32415573--32415750	27	6.6	27	84	3	205	29	28	15	26	1.96
32415594--32415749	82	1.9	81	88	3	233	29	28	15	26	1.96
32417906--32418066	43	3.7	44	73	10	143	32	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32428302--32428474	47	3.7	46	81	8	181	24	29	19	26	1.98
32428299--32428527	46	4.8	50	76	14	186	23	30	19	26	1.98
32428355--32428671	46	6.6	48	73	15	187	23	31	17	27	1.97
32428476--32428586	55	2.0	55	87	0	159	21	32	17	28	1.96
32430266--32430344	31	2.5	31	97	0	149	26	25	18	29	1.98
32430368--32430459	42	2.2	42	88	0	130	36	22	11	28	1.90
32431063--32431153	45	2.0	45	95	0	164	23	25	10	40	1.87
32431882--32432105	40	5.6	40	79	12	205	25	26	21	26	1.99
32431882--32432106	79	2.8	78	79	10	249	25	26	21	26	1.99
32432069--32432301	119	2.0	118	97	0	439	33	23	14	29	1.94
32439437--32439620	79	2.3	81	82	11	222	25	27	22	25	2.00
32439437--32439620	40	4.6	41	83	12	199	25	27	22	25	2.00
32443194--32443834	321	2.0	321	99	0	1273	34	22	8	34	1.84
32445797--32445867	35	2.0	35	94	0	124	28	9	18	43	1.81
32446488--32446587	51	2.0	51	97	0	191	21	17	25	37	1.94
32450617--32450841	40	5.7	40	87	5	278	25	28	22	24	2.00
32450617--32450841	119	1.9	120	83	6	296	25	28	22	24	2.00
32452769--32452841	37	2.0	37	97	0	137	28	16	6	47	1.72
32453381--32453425	21	2.1	21	83	0	54	33	22	15	28	1.95
32453397--32453437	21	2.0	21	85	0	55	29	24	14	31	1.95
32455292--32455319	13	2.2	13	100	0	56	25	21	17	35	1.95
32456379--32456499	48	2.5	48	79	0	125	25	28	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32462161--32462287	48	2.6	48	78	2	155	21	29	22	26	1.99
32462260--32462315	28	2.0	28	100	0	112	17	32	28	21	1.96
32462214--32462365	78	1.9	78	95	0	277	18	30	23	27	1.98
32462290--32462630	50	6.9	50	85	4	435	21	29	19	28	1.98
32462290--32462630	99	3.5	100	87	3	471	21	29	19	28	1.98
32462294--32462630	149	2.3	145	83	5	426	22	29	19	28	1.98
32468104--32468148	21	2.1	21	84	8	56	28	24	20	26	1.99
32470530--32470582	9	5.9	9	90	0	61	54	16	1	26	1.53
32470541--32470582	18	2.3	18	95	0	75	57	16	0	26	1.40
32474730--32474763	9	3.8	9	92	0	59	35	8	11	44	1.72
32476745--32476983	55	4.5	53	78	9	195	35	18	23	22	1.96
32476745--32476944	108	1.8	110	87	4	298	34	17	24	24	1.96
32477183--32477213	16	1.9	16	93	0	53	41	0	22	35	1.54
32479964--32479990	14	1.9	14	100	0	54	37	0	0	62	0.95
32481637--32481708	23	3.0	23	80	13	83	26	1	19	52	1.54
32493664--32493697	11	3.1	11	82	0	50	73	0	0	26	0.83
32493655--32493697	22	2.0	22	95	0	77	69	0	0	30	0.88
32494355--32494426	35	2.1	35	83	0	90	27	4	25	43	1.73
32494476--32494640	34	4.9	34	81	11	198	40	0	16	43	1.49
32494500--32494657	65	2.4	64	87	4	210	38	0	17	43	1.49
32494476--32494685	65	3.2	62	80	12	208	38	0	17	43	1.49
32494476--32494696	99	2.2	98	83	5	268	38	0	16	44	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32499398--32499463	19	3.5	18	74	15	62	63	3	3	30	1.24
32499419--32499482	19	3.3	19	72	20	69	64	3	1	31	1.19
32499403--32499483	39	2.1	37	95	4	144	64	2	2	30	1.20
32499410--32499472	20	3.2	20	70	20	69	65	3	1	30	1.18
32502787--32502840	21	2.6	21	78	0	54	37	1	22	38	1.65
32510206--32510253	5	9.0	5	79	20	53	20	2	0	77	0.88
32511984--32512037	26	2.1	26	96	0	99	29	11	24	35	1.90
32527347--32527429	31	2.7	31	90	3	125	28	24	15	31	1.96
32527649--32527718	25	2.8	25	93	0	113	24	22	25	27	2.00
32527863--32527942	27	3.0	27	92	3	135	38	8	22	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167