genome.fa.s23.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  161  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53396958--53397016	20	3.0	20	97	0	109	35	11	20	32	1.89
53396962--53397016	11	5.4	11	70	16	55	36	12	20	30	1.90
53397067--53397282	24	9.0	24	94	1	353	28	22	21	27	1.99
53398693--53398795	52	2.0	52	98	0	197	32	5	18	43	1.74
53400680--53400996	47	6.7	47	95	0	562	32	8	30	29	1.86
53401115--53401193	37	2.1	37	88	0	113	22	18	32	25	1.97
53403130--53403225	40	2.4	40	81	5	104	35	22	15	26	1.94
53415018--53415049	13	2.3	15	89	10	50	21	34	6	37	1.79
53418563--53418736	46	3.8	46	75	13	176	30	28	20	20	1.98
53421457--53421513	30	1.9	29	92	3	96	56	15	15	12	1.68
53432632--53432799	40	4.2	40	83	4	106	25	27	23	23	2.00
53432655--53432799	40	3.6	40	85	4	193	23	26	24	25	2.00
53441084--53441268	79	2.3	82	84	7	238	25	27	22	24	2.00
53441065--53441268	40	5.1	40	82	8	238	25	27	22	25	2.00
53450922--53451090	94	1.8	92	81	2	212	23	26	21	28	1.99
53453192--53453238	24	2.0	23	84	12	60	59	0	25	14	1.36
53459214--53459243	15	2.0	15	100	0	60	40	6	26	26	1.81
53465769--53465908	54	2.6	54	80	1	165	18	25	19	37	1.94
53465757--53465908	53	2.8	53	80	1	178	19	25	18	36	1.94
53468128--53468229	43	2.4	43	83	3	125	28	15	25	30	1.96
53474226--53474395	41	4.2	40	72	18	143	22	21	26	28	1.99
53494240--53494374	42	3.3	41	77	12	134	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53501800--53501993	46	4.2	46	84	2	185	36	13	23	26	1.93
53501861--53502007	46	3.2	46	89	1	188	37	13	21	27	1.91
53502257--53502298	21	2.0	21	95	0	75	35	4	35	23	1.76
53502663--53502777	46	2.5	46	78	4	126	31	17	17	33	1.93
53505539--53505599	30	2.1	29	93	3	104	26	14	22	36	1.93
53518228--53518371	49	2.9	49	84	4	200	26	27	20	25	1.99
53518231--53518371	51	2.8	49	83	4	185	26	27	21	24	1.99
53521091--53521310	46	4.8	46	81	5	232	23	31	20	25	1.98
53528191--53528295	43	2.4	43	87	3	149	35	24	14	25	1.93
53529065--53529496	216	2.0	216	100	0	864	30	15	15	37	1.89
53533442--53533532	45	2.0	45	91	0	146	36	25	14	24	1.93
53535405--53535487	43	1.9	43	90	0	130	30	30	16	22	1.96
53552648--53552696	22	2.2	20	77	19	53	51	26	4	18	1.64
53553445--53553614	43	4.0	43	75	6	148	34	24	14	26	1.94
53554186--53554447	65	4.0	65	97	0	488	45	24	4	25	1.73
53555871--53555911	21	1.9	22	90	5	66	41	2	21	34	1.67
53563028--53563160	46	2.9	47	85	3	171	20	20	25	33	1.97
53570076--53570208	46	2.9	47	87	3	180	20	21	24	33	1.97
53573932--53573965	17	2.0	17	94	0	59	32	29	11	26	1.92
53587777--53587866	45	2.0	45	97	0	171	33	14	12	40	1.83
53594486--53594521	16	2.2	16	90	0	54	41	25	2	30	1.69
53599969--53600103	43	3.1	44	81	6	175	24	18	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53599986--53600103	45	2.7	43	81	6	157	26	18	28	26	1.98
53600363--53600586	114	2.0	114	86	1	315	21	22	25	30	1.99
53600390--53600586	38	5.2	38	91	1	306	19	22	26	31	1.98
53600600--53600714	45	2.6	45	82	6	121	25	23	26	24	2.00
53601705--53601734	14	2.1	14	93	0	51	66	3	0	30	1.07
53603859--53603928	28	2.5	28	80	0	86	34	8	25	31	1.86
53605902--53606083	28	6.4	28	76	7	170	17	19	32	30	1.95
53605902--53606083	85	2.1	85	91	0	292	17	19	32	30	1.95
53605986--53606113	57	2.2	57	91	2	202	17	17	35	28	1.93
53611043--53611104	28	2.2	28	82	0	79	37	9	22	30	1.86
53617790--53617881	45	2.0	45	97	0	175	23	11	25	39	1.89
53617799--53617868	21	3.2	21	62	18	52	21	11	25	41	1.86
53623370--53623406	15	2.5	15	90	0	56	21	8	16	54	1.68
53623369--53623412	15	2.9	15	80	6	54	20	9	13	56	1.64
53627052--53627214	47	3.4	47	91	3	245	33	7	30	27	1.86
53627052--53627185	49	2.9	44	89	4	151	33	9	29	26	1.89
53627113--53627186	22	3.2	22	64	17	60	32	10	31	25	1.90
53637479--53637535	25	2.4	23	74	8	60	40	1	1	56	1.20
53641816--53641848	12	2.6	13	85	4	50	63	6	27	3	1.32
53650166--53650221	28	2.0	28	92	0	94	19	41	19	19	1.91
53650390--53650482	42	2.2	42	88	0	132	23	30	30	16	1.96
53653091--53653149	20	3.0	19	77	5	55	32	10	11	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53653062--53653149	40	2.2	40	84	8	108	30	9	13	46	1.74
53655364--53655403	20	2.0	21	85	5	55	37	7	12	42	1.71
53659438--53659472	17	2.1	17	100	0	70	22	5	25	45	1.74
53659484--53659595	27	4.1	27	84	7	138	15	24	23	37	1.93
53659484--53659595	54	2.1	54	88	3	163	15	24	23	37	1.93
53660517--53660629	56	2.0	56	100	0	226	34	14	26	24	1.94
53666460--53666508	20	2.5	21	77	12	59	36	8	12	42	1.72
53668215--53668290	11	6.8	11	70	24	52	43	0	2	53	1.14
53668221--53668299	25	3.2	24	76	15	81	40	0	5	54	1.22
53670063--53670146	35	2.4	35	83	0	105	33	27	14	25	1.94
53670780--53671102	96	3.4	95	80	6	339	25	28	18	28	1.98
53670781--53671112	144	2.3	143	82	4	391	25	28	17	28	1.98
53670780--53671112	48	6.9	48	77	5	307	25	28	17	27	1.98
53678545--53678862	96	3.3	95	85	5	383	22	28	20	29	1.98
53678546--53678879	144	2.3	144	85	4	415	23	28	19	29	1.98
53678549--53678879	48	6.9	48	79	8	318	23	28	19	29	1.98
53683462--53683501	17	2.4	17	78	0	53	22	2	7	67	1.28
53683512--53683545	15	2.2	16	89	5	52	41	0	0	58	0.98
53684619--53684658	14	3.1	13	82	10	55	15	0	32	52	1.43
53684712--53684742	12	2.6	12	100	0	62	22	16	29	32	1.95
53684975--53685013	19	2.1	19	100	0	78	20	15	25	38	1.92
53687052--53687093	12	3.6	12	80	6	50	71	0	14	14	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53691795--53691867	36	2.0	36	100	0	146	47	13	5	32	1.66
53692378--53692504	65	1.9	67	91	3	213	47	7	24	20	1.76
53695832--53695886	27	2.0	27	100	0	110	18	10	27	43	1.83
53697112--53697209	28	3.6	27	79	10	110	21	15	5	58	1.56
53702287--53702321	11	3.2	11	87	0	52	34	17	28	20	1.95
53702399--53702624	48	4.8	47	73	10	192	27	19	24	27	1.99
53704743--53704890	40	3.7	40	95	0	260	21	26	20	31	1.98
53709120--53709163	22	2.0	22	86	0	61	52	0	0	47	1.00
53709186--53709222	16	2.3	16	86	13	58	59	0	0	40	0.97
53709255--53709311	15	3.5	15	71	17	51	49	1	1	47	1.22
53709760--53709798	14	2.8	14	92	0	60	30	20	10	38	1.86
53711549--53711573	8	3.1	8	100	0	50	24	0	0	76	0.80
53711680--53711753	33	2.3	32	86	13	100	39	1	6	52	1.36
53714336--53714501	48	3.5	48	79	0	206	27	25	17	29	1.97
53716205--53716288	36	2.4	36	77	15	86	41	3	3	51	1.36
53716640--53716696	7	7.9	7	75	21	55	26	0	3	70	1.03
53716641--53716697	22	2.5	24	86	13	86	26	0	3	70	1.03
53716640--53716696	29	2.0	29	83	13	73	26	0	3	70	1.03
53722160--53722195	18	2.0	18	100	0	72	50	22	5	22	1.70
53731787--53731878	47	2.0	47	97	0	175	32	8	20	38	1.83
53743335--53743377	22	1.9	22	90	4	68	58	0	0	41	0.98
53743546--53743602	20	2.8	20	89	0	78	59	8	5	26	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53743551--53743618	20	3.5	19	84	9	75	57	7	5	29	1.50
53747030--53747094	13	5.0	13	80	14	80	38	1	0	60	1.07
53747021--53747099	8	9.5	8	73	23	58	39	1	0	59	1.06
53747022--53747101	5	16.6	5	82	12	105	40	1	0	58	1.06
53751278--53751375	29	3.4	28	92	5	160	33	14	17	34	1.90
53751377--53751460	29	2.9	29	90	1	123	38	26	7	28	1.82
53751468--53751621	46	3.4	45	75	8	134	48	20	6	24	1.73
53751810--53752281	202	2.3	201	86	2	640	40	15	11	32	1.83
53753607--53753649	16	2.8	16	89	3	61	32	2	0	65	1.06
53753607--53753662	15	3.6	16	83	11	64	33	1	0	64	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167