genome.fa.s23.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  95  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31430136--31430281	29	5.1	29	84	2	161	27	32	15	25	1.95
31438889--31439034	29	5.1	28	82	4	150	26	30	15	28	1.95
31440823--31440866	18	2.3	19	80	15	54	43	2	2	52	1.26
31448239--31448318	15	5.4	15	77	7	83	10	18	13	57	1.64
31448230--31448317	30	3.0	30	80	11	92	10	18	15	55	1.68
31450705--31450880	46	3.8	45	81	10	212	21	21	29	28	1.98
31450701--31450872	93	1.8	93	94	0	308	20	21	30	27	1.98
31453820--31453888	15	4.6	15	83	0	84	11	17	13	57	1.64
31453811--31453898	30	3.0	30	81	8	99	10	17	15	56	1.66
31456285--31456460	46	3.8	45	81	10	212	21	21	29	28	1.98
31456281--31456452	93	1.8	93	94	0	308	20	21	30	27	1.98
31458143--31458200	30	2.0	30	89	3	91	43	12	8	36	1.73
31472624--31472665	22	1.9	22	90	0	66	19	30	26	23	1.98
31473514--31473549	19	1.9	18	88	5	54	33	33	19	13	1.91
31490055--31490088	16	2.2	16	94	5	61	26	5	14	52	1.64
31493406--31493442	19	2.0	19	89	5	58	32	24	32	10	1.90
31493515--31493595	28	2.9	29	81	3	94	27	13	32	27	1.94
31501051--31501096	16	2.9	16	96	0	83	54	17	21	6	1.65
31507677--31507822	40	3.7	40	83	7	172	23	23	27	26	2.00
31507677--31507855	80	2.2	80	80	8	188	25	22	26	25	2.00
31507678--31507841	40	4.1	39	79	10	154	24	23	27	25	2.00
31509314--31509416	28	3.6	28	85	2	118	30	14	29	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31520168--31520278	55	2.0	55	94	0	195	40	20	7	31	1.80
31527104--31527181	31	2.5	31	87	2	122	29	25	16	28	1.97
31527401--31527470	25	2.8	25	89	4	97	24	21	27	27	1.99
31528280--31528344	27	2.4	27	79	5	69	21	23	18	36	1.95
31528302--31528353	27	1.9	28	84	7	72	17	21	23	38	1.93
31528398--31528494	27	3.6	27	81	14	119	34	10	16	39	1.83
31528486--31528643	54	2.9	54	83	3	176	30	10	19	39	1.86
31528487--31528610	27	4.6	27	85	2	169	29	8	20	41	1.81
31528632--31528747	27	4.4	25	75	11	81	37	7	20	33	1.82
31528642--31528733	27	3.4	27	83	5	114	41	6	22	29	1.79
31529197--31529399	31	6.5	31	91	0	325	29	17	24	28	1.97
31534460--31534551	46	2.0	46	89	0	139	21	21	27	29	1.99
31539522--31539711	27	7.1	27	81	3	222	29	23	8	38	1.84
31539522--31539710	54	3.5	53	83	4	245	29	23	8	38	1.84
31539522--31539711	80	2.4	81	87	0	256	29	23	8	38	1.84
31539585--31539754	81	2.1	81	85	2	225	34	22	7	35	1.83
31539522--31539755	54	4.4	54	82	4	231	32	22	8	36	1.84
31539820--31539905	27	3.1	28	78	17	99	40	16	8	34	1.78
31540222--31540279	25	2.4	24	86	11	82	29	20	24	25	1.99
31540510--31540589	42	1.9	42	100	0	160	33	12	18	35	1.89
31540711--31540775	31	2.1	31	88	0	94	29	16	23	30	1.96
31556840--31556946	46	2.3	46	91	0	169	35	11	29	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31560238--31560317	40	2.0	40	92	0	133	36	25	16	22	1.94
31565643--31565680	16	2.3	16	83	16	51	76	7	5	10	1.15
31566601--31566649	24	2.0	24	100	0	98	28	12	16	42	1.84
31569652--31569796	39	3.7	39	88	6	181	27	28	22	21	1.99
31570229--31570267	19	2.1	19	85	9	53	33	30	2	33	1.72
31575855--31576223	197	1.9	197	97	0	702	23	14	24	37	1.92
31584169--31584213	20	2.2	20	88	0	63	35	13	2	48	1.54
31585938--31585983	17	2.8	17	71	15	51	58	0	0	41	0.98
31585922--31585995	25	3.0	25	97	0	139	60	0	0	39	0.97
31586374--31586408	18	1.9	18	88	0	52	51	8	14	25	1.70
31588733--31588779	17	2.9	16	75	9	51	38	4	6	51	1.47
31589569--31589625	22	2.7	21	81	10	62	54	5	0	40	1.23
31589810--31589839	13	2.3	13	94	0	51	33	6	10	50	1.62
31603625--31603837	40	5.3	40	80	5	243	27	25	20	26	1.99
31603653--31603845	80	2.4	80	100	0	386	27	24	19	27	1.99
31608014--31608136	41	3.0	41	84	0	147	25	27	22	24	2.00
31608396--31608717	27	12.0	27	77	11	159	30	11	19	38	1.87
31608394--31608769	54	7.0	54	80	6	320	30	11	19	38	1.87
31608415--31608769	81	4.4	81	82	5	378	30	10	20	38	1.87
31608432--31608769	27	12.6	27	80	6	292	29	10	21	38	1.87
31608758--31608834	27	2.9	27	86	0	100	28	18	16	36	1.93
31608896--31608938	20	2.3	19	84	11	54	18	41	23	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31611139--31611196	24	2.4	24	85	0	80	31	15	6	46	1.72
31618825--31619055	47	5.0	45	71	10	160	35	17	22	24	1.95
31619015--31619218	53	3.8	54	80	5	207	35	16	24	24	1.94
31622274--31622319	24	1.9	25	86	8	69	30	19	6	43	1.76
31627243--31627300	30	1.9	31	82	3	73	37	10	24	27	1.88
31627928--31628157	47	5.0	45	73	9	192	34	18	24	22	1.96
31628118--31628308	55	3.5	53	80	4	213	36	17	24	21	1.95
31628118--31628322	53	3.8	54	81	4	207	35	17	24	21	1.95
31632900--31633062	76	2.2	74	83	6	202	25	10	12	52	1.70
31634181--31634247	21	3.2	21	72	8	73	28	40	14	16	1.88
31638219--31638357	49	2.8	50	85	4	183	30	28	17	23	1.97
31638231--31638360	50	2.6	49	87	3	181	30	27	17	23	1.97
31644046--31644209	76	2.2	75	81	9	190	28	10	12	49	1.73
31645343--31645459	35	3.3	35	86	2	164	16	11	29	42	1.82
31648772--31648868	41	2.4	41	87	0	140	19	22	28	28	1.98
31651176--31651438	40	6.6	40	87	3	300	26	28	20	24	1.99
31659094--31659271	27	6.6	27	84	3	205	29	28	15	26	1.96
31659115--31659270	82	1.9	81	88	3	233	29	28	15	26	1.96
31666366--31666622	53	4.8	53	80	5	241	31	23	12	32	1.91
31666357--31666622	27	10.0	27	75	7	215	32	23	12	32	1.91
31666366--31666622	80	3.2	78	81	3	235	31	23	12	32	1.91
31666403--31666597	106	1.8	105	89	3	302	30	24	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31672536--31672711	46	3.8	46	78	11	198	21	20	28	29	1.98
31672533--31672704	93	1.8	93	92	2	292	22	20	28	28	1.99
31680116--31680288	46	3.7	46	80	13	219	21	21	28	28	1.98
31680113--31680283	93	1.8	93	96	0	315	21	21	29	28	1.98
31690650--31690728	37	2.1	37	90	0	122	25	31	18	24	1.98
31690847--31691211	49	7.6	49	94	2	616	29	29	7	32	1.86
31708031--31708121	27	3.3	27	82	4	92	29	14	29	26	1.95
31710297--31710435	71	2.0	70	81	4	163	28	8	18	43	1.80
31713122--31713202	39	2.1	39	92	0	135	30	9	12	46	1.74
31713319--31713375	19	3.2	18	75	7	53	40	7	19	33	1.78
31725338--31725469	46	2.9	46	98	0	255	27	29	23	19	1.98
31727223--31727256	18	1.9	18	88	5	52	41	11	17	29	1.85
31729908--31729959	18	2.9	17	82	5	68	3	34	0	61	1.14
31732650--31732728	29	2.7	29	86	5	106	27	32	15	24	1.95
31732710--31732812	43	2.4	43	100	0	206	26	35	15	22	1.94
31748807--31749064	119	2.2	120	85	6	337	25	26	22	25	2.00
31748788--31749071	40	7.1	40	86	5	353	24	27	22	25	2.00
31756054--31756114	30	2.0	30	83	0	77	31	22	8	37	1.84
31757240--31757279	19	2.2	18	86	4	53	50	0	10	40	1.36
31757353--31757390	15	2.5	16	83	12	53	39	0	0	60	0.97
31758360--31758410	18	2.8	18	79	8	68	3	35	0	60	1.15
31766038--31766074	18	2.1	18	94	0	65	35	8	21	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31767040--31767157	42	2.8	42	80	6	132	26	18	22	32	1.97
31773539--31773760	40	5.6	40	87	3	297	23	26	22	27	2.00
31777075--31777102	13	2.2	13	100	0	56	39	10	35	14	1.81
31783987--31784047	28	2.2	28	84	0	77	27	24	22	24	2.00
31784198--31784254	27	2.1	27	83	0	69	40	22	21	15	1.91
31807881--31807954	25	3.0	25	75	13	80	28	18	25	27	1.98
31814132--31814186	26	2.1	26	82	3	65	27	16	20	36	1.93
31831312--31831362	21	2.4	21	86	0	75	19	19	17	43	1.89
31833190--31833298	37	2.9	37	91	0	164	26	31	18	23	1.97
31833506--31833651	47	3.1	47	87	0	202	28	30	10	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167