genome.fa.s23.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  73  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23240970--23241295	40	8.1	40	89	1	456	23	21	29	25	1.99
23245065--23245208	47	3.1	47	91	0	225	32	11	30	25	1.91
23245182--23245272	46	2.0	46	84	0	119	32	9	31	25	1.89
23245417--23245525	37	2.9	37	94	0	182	23	19	30	26	1.98
23249587--23249630	17	2.6	17	89	7	63	15	4	4	75	1.14
23254190--23254221	15	2.1	15	100	0	64	31	6	28	34	1.82
23261935--23261976	23	1.9	23	85	9	61	35	23	9	30	1.87
23266487--23266543	9	5.9	9	73	15	51	35	8	21	35	1.84
23266485--23266547	20	3.2	20	95	0	117	36	12	19	31	1.89
23266601--23266744	24	6.0	24	88	8	195	29	22	20	26	1.99
23266938--23267001	31	2.1	31	93	0	110	37	15	23	23	1.93
23274601--23274730	65	2.0	65	96	0	242	33	10	28	26	1.90
23279800--23279921	37	3.2	37	64	24	101	28	20	4	46	1.69
23279736--23279966	76	3.0	76	98	0	435	29	18	4	47	1.69
23294754--23294872	6	19.3	6	67	17	66	48	13	18	19	1.80
23294775--23294844	25	2.8	25	91	0	113	47	12	21	18	1.82
23294775--23294872	31	3.4	30	75	16	107	47	13	19	19	1.81
23294775--23294872	25	3.7	25	74	15	97	47	13	19	19	1.81
23294873--23295387	256	2.0	256	99	0	1021	32	27	22	18	1.97
23295631--23295934	27	11.2	27	86	1	367	41	6	22	29	1.78
23295631--23295934	81	3.7	81	88	2	430	41	6	22	29	1.78
23295911--23296026	27	4.3	26	79	8	108	28	8	23	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23296015--23296088	27	2.7	27	85	0	85	27	18	16	37	1.92
23297961--23298027	25	2.7	25	88	0	98	47	14	20	16	1.82
23298130--23298264	67	2.0	67	92	2	227	29	21	29	19	1.97
23298176--23298362	98	1.9	98	92	2	313	30	21	28	19	1.98
23298274--23298448	67	2.6	67	98	0	332	28	22	30	18	1.97
23298130--23298429	165	1.8	165	95	1	548	30	21	29	19	1.97
23298666--23299075	27	15.2	27	86	0	523	41	6	21	30	1.79
23298666--23299075	81	5.1	81	90	1	633	41	6	21	30	1.79
23299064--23299221	27	5.9	27	80	7	142	31	10	20	37	1.86
23299216--23299285	27	2.6	27	88	0	95	28	25	17	28	1.97
23300430--23300590	42	3.8	43	76	11	170	27	25	19	27	1.99
23303235--23303296	30	2.1	30	93	6	108	35	20	14	29	1.93
23312946--23313089	78	1.8	78	82	5	184	24	22	27	25	2.00
23312947--23313089	40	3.6	39	79	9	157	24	22	27	25	2.00
23316954--23317061	26	4.2	26	92	0	180	32	6	24	37	1.81
23322104--23322145	21	2.0	21	90	0	66	45	21	26	7	1.77
23322857--23322914	30	2.0	30	82	3	73	43	12	10	34	1.76
23337652--23337746	41	2.3	41	90	1	147	22	15	29	32	1.95
23341008--23341051	20	2.2	21	80	19	58	18	20	4	56	1.58
23343995--23344128	5	27.0	5	97	0	252	40	0	0	58	1.03
23350446--23350517	36	2.0	36	100	0	144	22	16	27	33	1.95
23352052--23352143	46	2.0	45	97	2	175	21	10	17	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23354856--23355063	27	7.7	27	81	4	222	23	13	19	43	1.86
23354856--23355116	54	4.8	54	79	2	247	23	14	18	43	1.87
23354856--23355082	81	2.8	80	83	3	267	23	13	19	43	1.86
23358633--23358672	20	2.0	20	100	0	80	15	35	0	50	1.44
23359675--23359853	27	6.7	27	85	3	227	23	10	21	44	1.83
23361159--23361226	34	2.0	34	97	0	127	30	2	25	41	1.70
23363233--23363277	21	2.1	22	83	4	56	37	4	0	57	1.19
23367902--23367981	35	2.3	35	84	0	106	28	22	25	23	1.99
23372614--23372659	24	1.9	25	82	8	60	60	4	6	28	1.40
23374921--23375165	49	4.9	50	81	4	289	25	18	27	28	1.98
23374923--23375165	100	2.4	98	84	3	308	25	18	27	28	1.98
23383326--23383396	37	1.9	37	94	5	126	16	30	12	39	1.86
23386464--23386504	20	2.0	20	90	0	64	31	9	29	29	1.89
23393442--23393709	46	5.8	46	88	7	409	21	20	28	29	1.98
23393442--23393709	93	2.9	92	85	9	393	21	20	28	29	1.98
23393439--23393701	139	1.9	139	97	0	499	21	20	28	28	1.98
23395970--23396017	25	2.0	24	95	0	78	20	22	22	31	1.97
23399186--23399370	79	2.3	82	84	7	238	25	27	22	24	2.00
23399167--23399370	40	5.1	40	82	8	238	25	27	22	25	2.00
23407428--23407610	79	2.3	79	83	7	210	26	27	21	24	1.99
23407407--23407610	40	5.1	40	80	8	220	25	27	21	24	1.99
23408748--23408867	56	2.1	56	98	0	231	22	23	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23412038--23412219	28	6.5	28	96	0	303	26	12	28	32	1.93
23418808--23419030	119	1.9	120	84	6	301	25	27	22	24	2.00
23418806--23419030	40	5.7	40	84	8	280	25	27	22	24	2.00
23430702--23430880	46	3.9	46	81	5	218	27	28	21	22	1.99
23430710--23430881	93	1.8	93	91	2	283	26	29	22	22	1.99
23433055--23433088	9	3.8	9	88	0	50	41	11	8	38	1.73
23439054--23439298	49	4.9	50	79	4	262	24	18	28	27	1.98
23439157--23439241	28	3.2	28	67	24	76	23	16	30	29	1.96
23449437--23449508	6	11.8	6	76	8	74	51	12	18	18	1.76
23449449--23449533	37	2.3	37	87	0	125	49	12	17	20	1.79
23449774--23449836	22	2.9	22	81	9	83	36	23	20	19	1.95
23450307--23450370	27	2.4	26	75	17	67	37	23	18	20	1.94
23450350--23450493	27	5.3	26	78	9	121	26	19	16	37	1.93
23450351--23450484	54	2.5	54	83	2	171	25	20	17	36	1.94
23454927--23455010	38	2.2	38	93	0	141	40	25	22	11	1.88
23456212--23456489	49	5.8	49	91	3	442	30	27	7	33	1.85
23459290--23459513	40	5.7	40	78	11	228	26	27	20	25	1.99
23459311--23459511	79	2.5	79	89	4	307	25	27	20	26	1.99
23459874--23460432	280	2.0	279	96	0	1019	32	22	11	33	1.90
23473975--23474638	330	2.0	332	86	1	938	28	24	23	23	2.00
23475571--23475632	23	2.7	23	82	7	72	37	17	24	20	1.94
23478865--23479039	39	4.5	39	79	0	170	15	30	16	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23479403--23479442	16	2.5	16	95	0	71	27	15	22	35	1.94
23483037--23483291	55	4.8	54	78	9	251	35	18	25	20	1.95
23483047--23483244	108	1.8	110	87	4	303	34	17	25	22	1.96
23483483--23483513	16	1.9	16	93	0	53	41	0	22	35	1.54
23485424--23485457	12	2.8	12	100	0	68	35	8	23	32	1.86
23485574--23485600	12	2.2	12	100	0	54	29	33	22	14	1.94
23487618--23487668	24	2.1	24	100	0	102	58	0	9	31	1.30
23490006--23490087	42	2.0	42	85	4	112	29	17	24	29	1.97
23493169--23493220	26	2.0	26	100	0	104	42	30	7	19	1.79
23497903--23497965	26	2.4	26	82	10	76	60	4	0	34	1.18
23502248--23502328	27	3.0	27	85	5	101	17	16	29	37	1.91
23504473--23504528	25	2.2	25	87	6	78	10	7	25	57	1.58
23505990--23506030	19	2.2	19	95	0	73	17	36	0	46	1.48
23506672--23506736	29	2.2	30	83	8	80	56	1	13	27	1.46
23506691--23506736	15	3.1	15	93	0	74	58	2	13	26	1.46
23518842--23518956	50	2.4	49	83	11	134	24	33	16	26	1.96
23525856--23526076	40	5.6	40	83	2	268	28	25	21	25	1.99
23535636--23535673	20	1.9	20	84	10	51	47	0	10	42	1.38
23541781--23541933	46	3.3	45	79	9	148	26	27	20	25	1.99
23541826--23542044	46	4.7	47	74	11	166	23	28	19	28	1.98
23548272--23548310	21	1.9	20	94	5	69	15	30	41	12	1.85
23549568--23549776	48	4.4	48	76	9	169	24	29	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23549602--23549776	95	1.9	94	80	6	210	24	29	17	29	1.97
23549650--23549776	47	2.7	46	84	8	150	25	29	16	29	1.97
23551127--23551181	24	2.3	24	83	0	65	14	29	23	32	1.94
23551138--23551191	24	2.2	24	90	6	83	14	25	24	35	1.94
23551183--23551240	25	2.4	24	77	13	64	25	24	15	34	1.95
23551598--23551673	38	2.0	38	94	0	134	34	11	11	42	1.78
23553969--23554031	26	2.3	26	83	5	72	33	25	11	30	1.90
23554137--23554248	27	4.2	26	83	7	134	16	25	23	34	1.95
23554137--23554248	54	2.1	54	86	3	154	16	25	23	34	1.95
23555726--23555831	45	2.4	46	84	4	137	22	30	14	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167