genome.fa.s23.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  93  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30862942--30863079	65	2.1	65	84	0	177	20	0	34	44	1.57
30862985--30863079	21	4.4	22	69	18	74	23	1	29	46	1.59
30863841--30864052	40	5.3	40	91	2	318	24	25	18	32	1.97
30863841--30864059	81	2.7	80	91	2	323	23	25	18	32	1.97
30863841--30864059	121	1.8	120	90	3	350	23	25	18	32	1.97
30864032--30864083	24	2.1	24	82	3	59	34	25	9	30	1.88
30866159--30866296	27	5.1	27	82	11	183	21	24	20	34	1.97
30866157--30866296	54	2.6	54	90	3	219	20	25	20	34	1.96
30866156--30866318	54	3.0	52	84	10	188	22	24	19	33	1.97
30869085--30869132	21	2.3	20	76	13	53	27	0	4	68	1.07
30869863--30869888	3	8.7	3	100	0	52	0	34	0	65	0.93
30869993--30870049	24	2.4	25	91	5	91	15	7	14	63	1.51
30877278--30877393	44	2.7	43	83	11	132	27	24	19	28	1.99
30881653--30881704	22	2.4	22	80	3	61	44	21	19	15	1.87
30884286--30884401	44	2.7	43	83	11	132	27	24	19	28	1.99
30886035--30886093	24	2.5	24	83	5	75	23	0	1	74	0.91
30886037--30886094	25	2.4	24	78	16	66	22	0	1	75	0.89
30887864--30887954	45	2.0	45	97	0	173	38	19	14	27	1.91
30892643--30892706	31	2.1	31	100	0	128	46	9	18	25	1.79
30892721--30892816	26	3.8	26	71	20	60	71	4	4	19	1.19
30892768--30892814	13	3.7	12	86	11	58	78	2	2	17	0.94
30892867--30892917	21	2.4	21	90	6	77	78	1	7	11	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30892867--30892917	7	7.3	7	73	8	50	78	1	7	11	1.04
30892886--30892925	14	2.9	13	85	3	53	80	0	5	15	0.88
30892886--30892938	27	2.0	26	82	10	63	75	0	5	18	0.99
30896230--30896277	6	8.5	6	81	9	57	68	2	0	29	1.01
30900115--30900294	40	4.5	40	81	4	186	24	27	21	26	1.99
30900611--30900683	29	2.5	29	88	4	103	26	31	16	26	1.96
30902581--30902659	37	2.1	37	88	0	113	25	30	18	25	1.98
30902780--30902906	47	2.7	47	82	2	148	27	32	9	30	1.88
30906538--30906725	40	4.7	40	90	3	299	26	27	21	24	1.99
30906505--30906725	119	1.9	119	85	5	313	25	27	21	25	2.00
30918095--30918151	25	2.2	25	82	14	71	33	1	1	63	1.15
30922654--30922707	21	2.5	22	79	8	58	38	0	3	57	1.17
30922800--30922847	5	9.6	5	100	0	96	39	0	0	60	0.97
30924593--30924702	44	2.5	45	85	4	152	20	18	17	43	1.88
30924682--30924706	6	4.2	6	100	0	50	16	16	16	52	1.76
30924870--30925071	18	11.3	18	78	5	176	38	10	12	38	1.78
30924885--30925071	71	2.6	72	78	6	191	38	11	12	36	1.80
30924918--30925072	53	2.9	54	82	6	172	39	12	11	36	1.79
30924871--30925040	89	1.9	89	82	3	216	38	11	12	37	1.80
30924870--30925164	18	16.1	18	74	9	175	37	11	13	37	1.82
30933016--30933216	53	3.7	53	78	3	177	20	23	16	38	1.93
30935290--30935470	96	1.9	96	88	2	274	19	28	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30936698--30936928	48	4.9	48	76	7	240	28	25	19	26	1.99
30941118--30941175	28	2.1	28	90	0	89	37	15	15	31	1.89
30950075--30950188	48	2.4	48	86	2	160	35	14	21	28	1.93
30950075--30950207	48	2.8	46	82	4	149	34	15	23	27	1.94
30960373--30960417	22	2.0	22	95	0	81	24	8	28	37	1.86
30967681--30967778	30	3.3	30	75	4	99	27	25	16	30	1.96
30969047--30969218	6	27.8	6	72	16	129	47	15	19	18	1.82
30969052--30969218	25	6.7	25	80	8	164	47	15	19	17	1.83
30969047--30969217	37	4.3	37	66	25	64	47	15	19	17	1.82
30969337--30969388	27	2.0	26	88	3	77	36	21	25	17	1.94
30969635--30969853	27	8.1	27	81	3	181	26	18	18	36	1.93
30969636--30969855	54	4.1	54	79	5	214	25	18	18	37	1.93
30969635--30969853	80	2.7	81	79	6	203	26	18	18	36	1.93
30969858--30970651	27	29.4	27	87	5	962	41	9	21	27	1.84
30972403--30972434	16	2.0	16	93	0	55	68	0	15	15	1.21
30973633--30973662	12	2.5	12	94	0	51	46	10	16	26	1.78
30973665--30973689	12	2.1	12	100	0	50	76	0	16	8	1.02
30973659--30973714	18	3.1	18	79	5	60	69	1	19	8	1.24
30973665--30973746	30	2.7	31	84	5	114	64	0	21	13	1.28
30975959--30976056	30	3.3	30	72	4	90	27	26	16	29	1.97
30977011--30977089	40	2.0	40	97	0	149	18	21	29	30	1.97
30981195--30981412	40	5.5	40	95	1	368	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30983272--30983385	58	2.0	58	96	0	210	22	18	28	29	1.97
30983368--30983966	300	2.0	301	97	0	1146	30	15	26	27	1.96
30984145--30984312	83	2.0	83	96	0	309	26	14	32	27	1.95
30984748--30984868	59	2.1	59	100	0	242	14	23	22	40	1.90
30989717--30989871	40	3.9	41	83	7	203	27	22	26	23	2.00
30989717--30989871	79	1.9	78	84	8	206	27	22	26	23	2.00
30993291--30993627	48	7.0	48	94	0	575	34	6	28	30	1.82
30993769--30993913	37	3.9	37	89	0	200	24	16	31	27	1.96
31002915--31003090	40	4.4	39	86	6	212	24	21	27	26	1.99
31002915--31003090	80	2.2	80	86	7	234	24	21	27	26	1.99
31006436--31006497	24	2.6	24	85	7	81	33	27	16	22	1.95
31022497--31022609	42	2.7	43	84	5	167	32	13	18	35	1.90
31025601--31025643	20	2.2	20	87	4	61	6	2	32	58	1.38
31026373--31026403	15	2.1	15	93	0	53	32	3	0	64	1.09
31045728--31045799	37	1.9	37	94	0	126	27	30	19	22	1.98
31045931--31046132	48	4.2	48	91	0	323	32	25	6	36	1.81
31049193--31049308	44	2.6	43	77	12	119	32	18	24	24	1.97
31048790--31049274	132	3.7	134	77	10	464	31	20	24	23	1.98
31050484--31050514	15	2.1	15	93	0	53	32	3	0	64	1.09
31053038--31053103	30	2.2	30	78	2	80	46	9	4	39	1.56
31054593--31054638	23	2.0	23	100	0	92	39	17	13	30	1.87
31058621--31058678	24	2.4	25	75	18	61	48	1	1	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31065449--31065624	46	3.8	46	77	12	198	21	19	28	29	1.98
31065446--31065617	93	1.8	93	93	0	299	22	20	29	28	1.98
31073031--31073203	46	3.7	46	76	13	183	21	19	29	30	1.97
31073025--31073196	93	1.8	93	91	2	283	21	19	29	29	1.98
31075438--31075479	19	2.2	19	91	8	68	30	0	19	50	1.48
31077243--31077575	48	6.9	48	78	4	314	27	18	29	24	1.98
31077252--31077576	96	3.4	94	80	7	359	27	19	29	23	1.98
31077257--31077575	144	2.2	144	86	4	430	27	19	29	24	1.98
31078593--31078618	13	2.0	13	100	0	52	23	30	38	7	1.83
31080816--31080940	62	2.0	62	98	0	241	34	12	12	40	1.80
31081687--31081721	17	2.1	17	100	0	70	40	14	0	45	1.45
31091213--31091269	29	1.9	30	92	3	98	61	15	1	21	1.43
31092099--31092128	9	3.3	9	90	0	51	40	0	3	56	1.16
31096565--31096685	52	2.3	53	84	5	156	24	15	28	31	1.96
31100090--31100215	59	2.1	59	94	1	216	47	0	18	34	1.49
31101412--31101547	52	2.6	52	83	3	166	26	14	27	31	1.95
31103028--31103063	18	2.0	18	89	10	56	41	19	0	38	1.52
31103207--31103368	43	3.8	42	81	12	179	32	23	18	25	1.97
31118113--31118152	21	2.0	20	85	5	53	17	20	0	62	1.33
31119745--31119806	27	2.3	26	78	8	70	37	0	11	51	1.38
31120554--31120587	17	1.9	18	94	5	61	26	8	5	58	1.51
31125296--31125362	5	13.4	5	74	12	57	22	2	2	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31125296--31125340	20	2.2	20	88	0	63	20	2	4	73	1.11
31127997--31128176	100	1.8	100	85	4	256	23	15	28	32	1.95
31128785--31128846	27	2.3	26	78	8	70	37	0	11	51	1.38
31132521--31132675	43	3.6	42	74	17	124	33	25	16	23	1.96
31134952--31135103	27	5.6	27	93	3	241	26	13	28	30	1.94
31134952--31135103	55	2.8	55	94	0	259	26	13	28	30	1.94
31142150--31142258	37	2.9	37	90	0	173	23	18	31	26	1.97
31143446--31143608	56	2.9	56	86	1	211	33	23	14	27	1.94
31152363--31152461	28	3.5	29	76	17	102	26	20	29	24	1.99
31152335--31152496	56	2.9	57	82	9	190	26	17	30	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167