Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  149  of  167  ( 19959 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49211077--49211400
83
3.9
82
78
11
315
41
22
6
28
1.79
49211396--49211698
84
3.8
79
78
11
296
39
24
7
28
1.82
49211184--49211606
219
2.0
213
86
4
589
40
24
6
28
1.79
49213269--49213418
78
1.9
78
98
0
291
38
10
10
41
1.73
49219020--49219088
4
17.2
4
96
0
129
23
0
26
50
1.49
49228330--49228433
35
3.0
35
97
0
190
24
11
47
17
1.80
49237903--49237967
33
2.0
33
81
6
78
56
7
0
35
1.28
49237910--49237967
17
3.5
17
75
11
57
55
8
0
36
1.31
49254997--49255051
20
2.7
20
88
2
83
50
10
12
25
1.73
49257596--49257649
3
18.0
3
92
0
90
31
1
1
64
1.14
49257978--49258033
21
2.7
21
86
8
71
33
5
5
55
1.45
49258193--49258247
24
2.3
22
81
12
56
34
7
1
56
1.38
49265446--49265487
21
1.9
21
90
9
66
16
11
4
66
1.40
49266188--49266229
19
2.2
19
95
0
75
52
0
9
38
1.34
49269388--49269416
8
3.8
8
90
9
51
20
0
0
79
0.74
49269702--49269740
18
2.1
19
90
4
62
2
0
28
69
1.02
49273729--49273769
21
2.0
21
90
0
64
29
21
29
19
1.98
49278628--49278675
11
4.4
11
78
7
53
0
14
8
77
0.99
49279183--49279283
30
3.4
31
84
5
120
29
22
3
43
1.71
49279548--49279597
10
5.2
10
85
7
68
72
0
28
0
0.86
49279548--49279597
19
2.6
20
84
9
68
72
0
28
0
0.86
49279666--49279700
3
11.3
3
93
6
61
68
0
31
0
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49279817--49279874
18
3.1
19
78
9
57
77
17
3
1
0.99
49279817--49279905
32
2.7
33
78
15
85
71
19
7
1
1.16
49279867--49279907
15
2.7
15
82
17
57
68
17
14
0
1.22
49280021--49280118
15
6.5
15
81
8
110
80
0
19
0
0.71
49280019--49280114
8
12.0
8
76
12
99
80
0
19
0
0.72
49280019--49280118
22
4.4
23
76
15
102
80
0
20
0
0.72
49280019--49280114
26
3.7
26
76
16
94
80
0
19
0
0.72
49287838--49287980
54
2.7
51
93
6
243
30
16
18
34
1.93
49287838--49287980
51
2.7
51
94
5
243
30
16
18
34
1.93
49288203--49288420
54
4.1
55
87
8
315
29
16
17
36
1.92
49287838--49288364
192
2.7
191
71
13
574
28
16
18
36
1.92
49288662--49288699
14
2.6
15
87
4
60
65
5
0
28
1.14
49288692--49288811
30
4.1
29
76
13
113
31
20
2
45
1.65
49289057--49289106
10
5.2
10
80
7
59
70
0
30
0
0.88
49289060--49289102
19
2.3
19
88
11
63
69
0
30
0
0.88
49289172--49289206
3
11.3
3
87
6
52
71
0
28
0
0.86
49289180--49289225
16
3.1
15
84
9
60
80
0
19
0
0.71
49289177--49289219
19
2.3
19
92
8
70
76
0
23
0
0.78
49289323--49289379
19
3.4
16
80
19
64
77
17
3
1
1.00
49289324--49289396
31
2.3
32
81
13
80
72
19
6
1
1.14
49289517--49289614
15
6.5
15
81
8
110
80
0
19
0
0.71
49289515--49289610
8
12.0
8
76
12
99
80
0
19
0
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49289515--49289614
22
4.4
23
76
15
102
80
0
20
0
0.72
49289515--49289610
26
3.7
26
76
16
94
80
0
19
0
0.72
49289816--49289869
24
2.2
25
96
3
101
48
11
14
25
1.77
49290178--49290218
21
2.0
21
86
9
59
51
17
4
26
1.65
49290214--49290446
17
13.4
17
77
6
216
29
11
10
48
1.73
49290235--49290445
70
3.1
69
93
3
320
28
11
10
48
1.73
49290214--49290446
35
6.7
35
80
2
254
29
11
10
48
1.73
49293897--49293931
12
2.9
12
91
0
52
28
17
5
48
1.69
49302490--49302718
122
1.9
122
84
5
309
30
13
20
35
1.91
49302594--49302755
71
2.3
71
85
2
207
29
12
19
38
1.89
49302228--49303034
192
4.2
192
96
0
1488
30
13
20
35
1.91
49302228--49303034
385
2.1
385
96
0
1492
30
13
20
35
1.91
49303053--49303086
16
2.1
17
88
5
52
17
11
5
64
1.45
49302992--49303235
91
2.8
88
82
9
275
27
18
18
35
1.94
49302992--49303250
85
2.9
88
81
10
282
27
17
17
37
1.93
49303347--49303564
54
4.1
55
87
8
315
29
16
17
36
1.92
49303806--49303843
14
2.6
15
87
4
60
65
5
0
28
1.14
49303836--49303955
30
4.1
29
76
13
113
31
20
2
45
1.65
49304831--49304873
22
2.0
22
86
8
63
53
16
4
25
1.62
49304869--49305031
17
9.4
17
78
9
159
30
12
10
47
1.74
49304869--49305031
35
4.7
34
79
8
168
30
12
10
47
1.74
49306579--49306620
14
3.1
14
73
13
52
59
11
11
16
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49306570--49306620
26
2.0
26
100
0
102
56
11
11
19
1.65
49306745--49306801
28
2.0
28
96
0
105
49
0
26
24
1.51
49310655--49310709
24
2.2
24
83
3
65
63
5
7
23
1.41
49311105--49311143
9
4.3
9
83
0
51
58
2
0
38
1.12
49311754--49311782
14
2.0
15
93
6
51
10
6
6
75
1.17
49313749--49313774
5
5.2
5
100
0
52
23
0
0
76
0.78
49317797--49317845
22
2.1
24
92
7
84
30
0
2
67
1.02
49320287--49320332
24
1.9
24
100
0
92
69
4
0
26
1.07
49320329--49320434
30
3.5
30
83
2
124
30
22
2
44
1.67
49321462--49321522
17
3.8
17
78
18
60
36
6
3
54
1.43
49321933--49322091
81
2.0
81
97
0
300
36
18
18
26
1.94
49322175--49322667
261
1.9
261
95
0
896
28
19
18
34
1.95
49327483--49327621
69
2.0
69
88
2
208
33
24
25
15
1.95
49334257--49334287
14
2.2
14
94
0
53
29
9
9
51
1.66
49334198--49334851
89
7.7
87
83
6
726
28
16
19
35
1.93
49334712--49334882
75
2.2
78
81
6
188
33
16
16
32
1.92
49335087--49335132
24
1.9
24
95
0
83
69
2
0
28
1.00
49335129--49335248
30
4.1
29
80
7
127
31
24
2
41
1.68
49335129--49335245
60
2.0
59
84
5
155
29
24
2
42
1.68
49335469--49335511
14
2.8
16
86
13
63
67
11
6
13
1.41
49342110--49342189
30
2.4
34
76
20
96
27
17
7
47
1.74
49342130--49342192
30
2.1
30
96
0
117
26
23
6
42
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49342136--49342186
15
3.4
15
73
10
59
25
21
7
45
1.79
49342662--49342700
20
1.9
21
89
5
62
41
7
20
30
1.80
49343031--49343084
26
2.1
26
96
0
99
55
7
12
24
1.63
49343039--49343096
26
2.2
26
87
6
80
58
5
15
20
1.56
49351665--49351696
16
2.0
16
93
0
55
25
15
12
46
1.81
49352844--49353346
246
2.1
243
82
4
609
32
12
11
43
1.78
49355848--49355878
15
2.1
15
100
0
62
38
16
6
38
1.74
49357845--49357886
6
7.0
6
91
0
66
54
0
11
33
1.37
49366988--49367067
15
5.4
15
73
7
65
12
16
11
60
1.60
49370803--49370885
31
2.7
31
88
0
121
38
3
22
34
1.72
49371123--49371216
47
2.0
47
93
0
161
29
24
25
20
1.99
49371073--49371276
106
1.9
106
79
7
227
34
25
21
19
1.96
49373136--49373241
34
3.1
34
82
10
126
24
22
33
19
1.97
49378567--49378611
21
2.1
21
83
0
54
44
15
20
20
1.87
49388583--49388628
23
2.0
23
82
0
56
17
17
17
47
1.83
49393160--49393206
21
2.2
22
92
3
78
21
19
38
21
1.94
49396265--49396338
36
2.1
36
100
0
148
43
2
24
29
1.68
49398123--49398179
30
1.9
30
92
0
96
29
14
17
38
1.89
49404877--49404990
40
2.9
39
74
10
106
42
27
14
15
1.87
49409971--49410004
17
2.0
17
88
0
50
47
0
2
50
1.16
49417633--49417677
21
2.1
21
84
8
56
40
20
22
17
1.92
49425434--49425876
135
3.3
135
84
0
546
29
21
23
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49427566--49427927
46
7.8
46
77
15
388
21
20
29
29
1.98
49427563--49427920
93
3.8
93
98
0
689
21
20
29
28
1.98
49430331--49430374
18
2.5
17
82
7
52
27
4
4
63
1.33
49432330--49432374
18
2.6
17
79
6
54
51
0
0
48
1.00
49432335--49432391
27
2.1
27
84
12
73
57
0
1
40
1.09
49438881--49438914
16
2.1
16
88
0
50
41
14
0
44
1.45
49442409--49442494
37
2.3
37
76
11
95
37
11
6
44
1.68
49444317--49444365
10
4.7
10
75
9
53
2
16
8
73
1.16
49444375--49444465
5
18.4
5
74
15
82
53
2
2
41
1.25
49447335--49447500
43
3.9
42
75
10
124
26
20
24
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167