genome.fa.s23.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  156  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51445982--51446147	82	2.0	82	95	0	296	36	7	10	45	1.67
51450977--51451012	18	2.0	18	100	0	72	33	22	0	44	1.53
51452942--51453012	35	2.0	35	97	0	133	26	14	12	46	1.80
51460161--51460459	54	5.5	54	99	0	580	27	19	22	31	1.97
51460503--51460575	38	1.9	37	86	2	101	38	16	21	23	1.93
51460549--51460665	46	2.5	46	88	2	164	43	16	22	17	1.88
51460926--51460972	25	2.0	25	83	8	62	53	4	14	27	1.60
51461617--51461773	38	4.1	38	92	1	253	17	20	24	37	1.94
51461617--51461794	38	4.6	38	90	2	187	18	20	24	35	1.95
51465198--51465224	12	2.2	12	100	0	54	33	14	0	51	1.43
51467732--51467901	87	2.0	87	92	0	286	27	11	10	51	1.70
51474417--51474447	14	2.2	14	94	0	53	35	6	3	54	1.42
51480405--51480457	26	2.1	25	82	6	63	54	3	1	39	1.29
51481144--51481170	14	1.9	14	100	0	54	25	0	0	74	0.83
51481144--51481188	16	3.0	15	87	6	56	26	2	2	68	1.12
51483941--51484091	53	2.9	53	85	4	207	43	14	5	37	1.68
51490423--51490477	15	3.9	15	79	13	71	25	32	14	27	1.95
51497805--51497848	15	2.9	16	80	10	56	38	18	31	11	1.86
51497870--51497909	21	1.9	21	84	0	53	30	22	32	15	1.94
51498194--51498280	29	3.0	29	91	1	138	20	33	20	25	1.97
51498195--51498285	30	3.1	30	90	1	139	20	31	19	27	1.97
51502026--51502140	57	2.0	57	100	0	230	35	5	20	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51502050--51502138	27	3.2	27	65	20	74	34	6	17	40	1.77
51504253--51504283	3	10.3	3	100	0	62	67	0	0	32	0.91
51508623--51508776	70	2.2	69	80	4	175	41	11	18	27	1.86
51511893--51511950	14	4.2	14	73	8	57	46	0	10	43	1.38
51511894--51511952	13	4.4	13	72	19	50	44	0	10	45	1.37
51512230--51512271	18	2.2	20	88	12	63	42	0	4	52	1.22
51519004--51519049	18	2.3	20	85	10	60	50	13	2	34	1.53
51520702--51520726	8	3.1	8	100	0	50	36	0	0	64	0.94
51521772--51521800	15	1.9	15	100	0	58	31	0	0	68	0.89
51531915--51531947	10	3.2	11	87	12	52	84	0	9	6	0.76
51532658--51532693	13	2.8	14	84	16	51	27	25	0	47	1.52
51532645--51532685	18	2.2	19	87	12	59	29	24	0	46	1.53
51532808--51532942	39	3.4	38	73	8	101	28	28	20	23	1.99
51533183--51533221	18	2.1	19	85	4	53	51	7	0	41	1.31
51534528--51534584	5	11.0	5	78	14	62	56	1	0	42	1.10
51534527--51534582	12	4.5	12	81	16	69	55	1	0	42	1.10
51534529--51534584	26	2.2	26	90	6	69	55	1	0	42	1.10
51535153--51535344	62	3.0	64	90	4	307	16	30	13	39	1.87
51541931--51541973	12	3.8	12	81	12	54	48	0	4	46	1.22
51545939--51546006	19	3.2	23	64	20	65	52	17	7	22	1.69
51545927--51546009	41	2.0	41	100	0	166	51	19	7	21	1.70
51554702--51554784	45	1.9	42	83	9	105	36	9	4	49	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51556782--51556906	61	2.0	61	100	0	250	45	8	6	40	1.59
51556785--51556880	30	3.2	30	61	19	72	45	7	5	41	1.54
51558046--51558070	11	2.3	11	100	0	50	44	16	12	28	1.83
51578102--51578126	3	8.3	3	100	0	50	68	0	32	0	0.90
51584242--51584320	21	3.5	21	70	18	68	45	3	5	45	1.43
51584224--51584322	48	2.1	48	98	0	189	43	5	7	44	1.53
51590175--51590221	14	3.4	14	74	11	51	59	2	6	31	1.34
51590504--51590540	18	2.0	19	89	5	58	37	0	0	62	0.96
51591799--51591859	31	1.9	32	86	3	88	40	1	11	45	1.50
51594432--51594478	19	2.4	20	82	10	53	55	4	2	38	1.31
51594644--51594674	16	1.9	16	93	0	53	35	6	9	48	1.62
51598516--51598540	3	8.3	3	100	0	50	32	68	0	0	0.90
51605884--51606037	46	3.4	46	92	1	240	29	24	13	33	1.93
51609154--51609184	15	2.1	15	100	0	62	38	0	0	61	0.96
51610798--51610833	8	4.5	8	96	0	63	13	33	0	52	1.41
51619266--51619292	6	4.5	6	100	0	54	29	33	18	18	1.95
51623535--51623603	32	2.3	28	77	18	68	40	0	17	42	1.49
51624413--51624500	30	2.9	30	77	9	90	43	6	10	39	1.65
51641942--51642511	203	2.7	211	83	5	753	41	22	11	24	1.87
51644038--51644068	12	2.6	12	100	0	62	25	9	25	38	1.86
51644122--51644186	31	2.1	31	94	0	112	38	6	15	40	1.72
51649163--51649251	37	2.3	38	84	11	117	53	5	1	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51652137--51652495	46	7.6	46	87	5	425	19	23	15	42	1.89
51652137--51652495	92	3.8	96	88	5	468	19	23	15	42	1.89
51654557--51654606	21	2.4	22	70	19	52	0	34	0	66	0.92
51654564--51654597	17	2.0	17	94	0	59	0	26	0	73	0.83
51654629--51654666	15	2.4	16	86	8	60	5	15	0	78	0.91
51658475--51658517	20	2.2	20	86	0	59	30	27	23	18	1.98
51665649--51665743	42	2.3	42	91	5	151	42	6	10	41	1.65
51667201--51667259	27	2.1	28	84	9	77	62	5	3	28	1.32
51674043--51675089	215	4.9	217	88	4	1543	34	17	14	33	1.90
51674043--51675089	421	2.4	431	88	4	1564	34	17	14	33	1.90
51674544--51675089	206	2.6	208	89	5	807	33	17	14	34	1.90
51677376--51677410	3	11.7	3	100	0	70	65	0	0	34	0.93
51679496--51679547	24	2.2	23	96	3	95	21	26	11	40	1.87
51689029--51689061	16	2.1	16	100	0	66	42	6	12	39	1.67
51691729--51691782	26	2.0	28	89	7	85	57	5	11	25	1.55
51691962--51691993	15	2.1	16	94	5	57	78	3	18	0	0.89
51691971--51692215	126	2.0	123	95	2	445	53	3	20	22	1.59
51695732--51695876	72	2.0	72	85	2	193	33	15	26	24	1.95
51697602--51698063	200	2.3	200	97	0	870	42	6	11	38	1.68
51698573--51698626	23	2.4	21	72	22	56	31	1	5	61	1.30
51698312--51699051	135	5.5	133	92	2	1166	28	8	6	56	1.52
51698312--51699037	269	2.7	268	92	2	1185	28	8	6	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51699069--51699120	16	3.2	16	73	10	52	23	7	3	65	1.35
51699429--51699457	10	2.7	11	94	5	51	62	3	0	34	1.12
51699522--51699566	19	2.3	19	84	3	54	0	20	0	80	0.72
51699530--51699567	19	2.0	20	89	5	60	0	15	0	84	0.63
51699533--51699562	6	5.2	6	96	4	53	0	13	0	86	0.57
51699821--51699859	11	3.5	11	80	13	53	10	10	5	74	1.21
51699811--51699857	22	2.1	22	92	0	76	17	10	4	68	1.35
51701325--51701350	9	2.9	9	100	0	52	53	0	0	46	1.00
51701493--51701530	17	2.2	17	90	0	58	31	0	0	68	0.90
51701493--51701530	8	4.4	9	80	12	53	31	0	0	68	0.90
51701661--51701785	60	2.1	59	82	4	144	24	16	11	48	1.79
51701942--51702106	59	2.8	57	88	5	233	45	11	18	24	1.82
51703226--51703251	3	8.7	3	100	0	52	30	0	0	69	0.89
51703252--51704240	73	13.5	73	99	0	1969	27	5	25	41	1.78
51718001--51718043	6	7.2	6	91	0	68	20	34	0	44	1.52
51727122--51727202	28	3.0	26	78	10	72	28	23	11	37	1.89
51727136--51727207	28	2.6	28	88	0	99	30	26	11	31	1.91
51735105--51735173	24	2.7	25	82	14	72	31	23	0	44	1.53
51735118--51735180	24	2.6	25	78	12	78	31	23	0	44	1.54
51735315--51735367	3	17.7	3	84	0	70	58	5	0	35	1.22
51735313--51735369	18	3.2	18	89	0	87	56	8	0	35	1.31
51735313--51735367	12	4.6	12	90	0	83	58	7	0	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51736031--51736056	11	2.4	11	100	0	52	0	42	7	50	1.31
51740493--51740560	22	3.0	22	81	10	84	41	19	23	16	1.90
51746361--51746389	5	5.8	5	100	0	58	17	0	0	82	0.66
51747133--51747164	15	2.1	15	94	0	55	0	21	0	78	0.76
51747140--51747171	15	2.1	15	94	0	55	0	21	0	78	0.76
51756789--51756928	2	70.0	2	100	0	280	50	0	50	0	1.00
51757240--51757294	29	1.9	28	82	10	67	43	3	1	50	1.30
51762481--51762525	22	2.1	22	88	12	67	60	13	2	24	1.45
51768623--51768710	40	2.3	37	79	11	99	36	2	1	60	1.17
51769104--51769161	30	1.9	31	92	3	100	53	13	15	17	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167