genome.fa.s23.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  107  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35599721--35599758	19	2.1	17	90	9	58	57	0	0	42	0.98
35602463--35602544	42	2.0	42	90	0	128	30	15	23	30	1.96
35620649--35620849	39	5.2	39	94	0	348	18	22	29	28	1.98
35628929--35629028	50	2.0	50	100	0	200	44	10	14	32	1.78
35628940--35629020	26	3.2	26	60	19	62	44	8	16	30	1.77
35631139--35631215	23	3.4	23	85	7	95	27	24	16	31	1.97
35631294--35631320	12	2.2	12	100	0	54	25	29	14	29	1.95
35633590--35633865	48	5.8	48	78	10	298	28	25	19	26	1.99
35645909--35646087	85	2.1	85	98	0	349	26	26	8	38	1.85
35646717--35646749	15	2.1	16	88	11	50	39	18	3	39	1.66
35648336--35648389	26	2.2	25	77	9	58	29	16	3	50	1.63
35652650--35652826	88	2.0	88	100	0	354	19	14	14	51	1.76
35655539--35655579	21	2.0	21	85	9	57	26	24	7	41	1.81
35657322--35657475	34	4.6	34	72	6	100	39	7	22	30	1.81
35676189--35676368	41	4.4	41	85	1	245	22	28	15	33	1.95
35676187--35676368	81	2.2	82	91	0	285	22	28	15	33	1.95
35680698--35680756	27	2.2	27	81	0	73	25	27	8	38	1.84
35680764--35680861	27	3.7	26	79	5	97	45	17	7	29	1.75
35680817--35680889	27	2.7	27	82	0	74	39	20	8	31	1.82
35680874--35681231	27	13.3	27	87	1	484	34	19	21	24	1.96
35680820--35681231	81	5.1	80	84	1	324	34	19	19	25	1.96
35681633--35681711	31	2.5	31	91	0	122	17	18	15	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35681633--35681711	6	12.8	6	72	15	63	17	18	15	48	1.82
35683055--35683200	27	5.4	27	79	6	152	40	20	8	30	1.83
35683212--35683448	27	8.7	27	84	0	330	28	22	8	40	1.82
35683210--35683448	54	4.4	54	92	1	388	28	22	7	41	1.82
35683415--35683555	27	5.2	27	77	0	102	40	22	7	29	1.81
35683214--35683492	81	3.4	81	83	0	324	30	21	7	39	1.82
35683415--35683555	54	2.6	54	83	0	156	40	22	7	29	1.81
35683456--35683583	27	4.7	27	80	3	123	40	21	7	30	1.80
35683566--35683810	27	9.1	27	87	1	339	33	19	21	26	1.97
35683539--35683797	81	3.2	78	86	5	331	32	20	19	27	1.97
35683566--35683810	81	3.0	81	89	1	375	33	19	21	26	1.97
35683865--35683974	6	17.8	6	71	15	82	19	17	14	49	1.80
35683875--35683932	19	3.4	19	65	30	58	18	17	17	46	1.84
35683865--35683974	31	3.5	31	93	0	166	19	17	14	49	1.80
35687246--35687329	34	2.5	34	78	3	98	30	13	11	44	1.79
35688062--35688101	14	2.9	14	82	17	57	27	0	7	65	1.20
35688070--35688095	7	3.7	7	100	0	52	26	0	11	61	1.30
35687999--35688741	372	2.0	372	89	2	1145	35	9	14	40	1.79
35690187--35690285	38	2.6	38	80	0	117	39	4	9	47	1.54
35692278--35692376	38	2.6	38	80	0	117	39	4	9	47	1.54
35694264--35694358	41	2.3	41	85	0	136	34	22	20	23	1.96
35694273--35694341	21	3.3	21	66	11	52	36	18	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35710809--35711072	140	1.9	140	93	0	456	30	21	18	29	1.97
35716959--35717030	36	2.0	36	97	0	135	36	9	19	34	1.85
35717235--35717263	13	2.2	13	100	0	58	31	0	13	55	1.39
35721307--35721335	14	2.0	15	93	6	51	55	20	3	20	1.58
35726145--35726228	27	3.1	27	86	3	107	30	22	5	40	1.78
35726290--35726350	27	2.3	27	85	5	79	45	22	3	27	1.68
35726290--35726361	27	2.7	27	77	14	76	44	23	4	27	1.72
35726464--35726537	27	2.7	27	76	12	71	37	20	20	21	1.94
35727063--35727143	27	3.0	27	83	1	101	33	19	23	23	1.97
35727535--35727626	42	2.2	42	90	0	139	29	15	22	32	1.95
35732052--35732219	49	3.5	48	75	14	186	22	25	22	30	1.99
35732051--35732271	94	2.4	94	91	1	356	22	26	21	29	1.99
35736280--35736321	21	2.0	22	90	4	68	33	21	0	45	1.52
35737706--35737970	40	6.7	40	85	5	286	26	27	21	24	1.99
35737673--35737970	80	3.7	80	79	9	263	25	27	21	25	1.99
35737902--35737979	40	1.9	41	82	10	97	26	28	20	24	1.99
35745649--35745873	40	5.7	40	83	6	242	25	27	21	25	1.99
35745805--35745882	40	1.9	41	82	10	97	26	28	20	24	1.99
35766361--35766578	40	5.5	40	92	1	323	24	27	23	23	2.00
35772196--35772397	101	2.0	101	95	1	361	31	22	12	33	1.91
35774196--35774373	40	4.5	40	87	4	220	25	29	23	22	1.99
35782055--35782350	27	11.0	27	84	2	249	37	20	11	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35784103--35784373	132	2.1	132	91	2	447	35	18	9	37	1.82
35786031--35786109	25	3.2	25	85	7	115	31	21	16	30	1.95
35786101--35786158	25	2.3	25	85	11	75	31	27	15	25	1.96
35787738--35787913	52	3.5	49	82	9	198	27	13	30	28	1.94
35793430--35793462	12	2.8	12	100	0	66	24	42	24	9	1.83
35803670--35803746	34	2.3	34	84	8	95	29	7	23	38	1.83
35808059--35808090	14	2.4	14	90	10	50	21	9	28	40	1.84
35808056--35808275	51	4.3	51	78	1	199	27	16	25	30	1.97
35808056--35808240	50	3.6	50	79	2	145	26	17	25	30	1.98
35808197--35808330	51	2.6	51	82	4	137	28	13	29	29	1.94
35814152--35814311	38	4.3	38	90	2	261	23	29	23	24	1.99
35814146--35814311	75	2.2	76	92	2	271	22	28	23	24	1.99
35817373--35817592	51	4.3	51	77	2	183	26	16	26	30	1.97
35829909--35830091	79	2.3	80	83	7	212	26	27	21	24	1.99
35829907--35830091	40	4.7	40	82	7	225	27	28	21	23	1.99
35854964--35855146	79	2.3	81	81	11	209	26	27	21	24	2.00
35854962--35855146	40	4.6	39	80	7	196	26	27	21	24	1.99
35857751--35857791	21	1.9	22	85	5	57	43	9	21	24	1.83
35860627--35860673	24	2.0	24	100	0	94	27	17	8	46	1.76
35860630--35860683	24	2.2	24	90	0	81	31	18	9	40	1.82
35861377--35861440	30	2.2	30	94	2	112	31	6	14	48	1.68
35866995--35867039	23	2.0	22	83	8	56	20	15	31	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35867524--35867588	28	2.3	28	91	0	103	32	27	7	32	1.85
35867694--35867756	28	2.2	29	88	8	94	22	23	23	30	1.99
35867705--35867767	28	2.2	28	85	2	81	25	25	19	30	1.98
35868221--35868259	19	2.1	19	85	0	51	15	5	7	71	1.26
35875345--35875409	28	2.3	28	89	0	94	33	26	7	32	1.85
35875515--35875577	28	2.2	29	86	8	85	20	23	23	31	1.98
35875525--35875588	28	2.2	28	83	2	74	23	26	18	31	1.98
35876042--35876080	19	2.1	19	85	0	51	15	5	7	71	1.26
35878736--35878851	13	8.7	13	69	16	76	42	2	20	34	1.66
35878796--35878851	27	2.1	27	89	0	85	44	0	23	32	1.53
35878730--35878833	40	2.6	39	86	3	154	41	2	19	36	1.66
35880915--35881005	44	2.1	45	89	4	141	19	32	14	32	1.92
35884738--35884896	27	5.9	27	81	11	184	34	22	23	19	1.96
35884756--35884899	54	2.7	54	95	2	254	34	23	23	18	1.96
35886493--35886600	26	4.2	26	93	0	189	36	24	7	32	1.83
35892068--35892492	131	3.3	131	84	3	520	36	19	17	26	1.94
35892120--35892518	132	3.0	132	84	3	520	35	18	18	27	1.95
35893191--35893291	41	2.4	42	85	8	143	31	15	20	31	1.94
35894370--35894414	22	2.0	22	83	8	56	60	0	4	35	1.17
35894370--35894414	23	2.0	22	82	4	54	60	0	4	35	1.17
35894465--35894499	16	2.2	16	90	10	54	22	0	2	74	0.95
35895933--35896006	26	2.8	26	93	0	121	32	8	22	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35897492--35897544	26	2.0	26	82	7	63	37	20	15	26	1.92
35900079--35900145	33	2.0	33	91	0	107	14	22	16	46	1.84
35900702--35901827	514	2.2	514	98	0	2182	36	11	10	41	1.75
35902210--35902274	9	6.9	9	77	10	67	46	21	0	32	1.52
35902216--35902274	21	3.0	21	82	7	70	47	22	0	30	1.51
35907797--35907837	21	2.0	21	85	0	55	29	19	48	2	1.61
35908134--35908312	43	4.2	42	81	4	187	22	19	22	34	1.96
35908971--35909020	22	2.2	23	89	7	84	46	24	8	22	1.78
35909222--35909333	56	2.0	56	100	0	224	55	3	3	37	1.35
35910594--35910633	20	2.0	20	90	0	62	0	7	17	75	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167