genome.fa.s23.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  22  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6632635--6632714	23	3.4	22	75	16	70	1	11	11	76	1.09
6632999--6633037	11	3.3	11	80	19	51	10	0	20	69	1.17
6633970--6634020	27	2.0	25	85	11	68	41	3	5	49	1.45
6636851--6636901	26	2.0	26	88	0	75	7	9	21	60	1.53
6639811--6639852	21	2.0	21	81	9	50	30	11	0	57	1.35
6640954--6641000	23	2.0	23	100	0	94	36	12	12	38	1.82
6640943--6641004	23	2.5	25	84	12	92	40	9	16	33	1.81
6649469--6649513	23	2.0	23	82	8	56	37	8	13	40	1.76
6651785--6651821	19	1.9	19	100	0	74	48	5	10	35	1.61
6653982--6654006	13	1.9	13	100	0	50	24	24	20	32	1.98
6655016--6655049	17	2.0	17	94	0	59	23	32	11	32	1.91
6657512--6657575	29	2.2	29	78	10	69	32	3	3	60	1.28
6671545--6671576	16	2.0	16	93	0	55	25	15	18	40	1.90
6672043--6672094	23	2.3	23	90	6	79	34	13	9	42	1.77
6676496--6676547	23	2.3	23	90	6	79	34	13	9	42	1.77
6682802--6682854	24	2.2	24	89	0	79	18	9	28	43	1.81
6683530--6683579	20	2.5	20	83	3	64	50	12	10	28	1.71
6686400--6686446	23	2.0	23	100	0	94	31	21	21	25	1.98
6687669--6687693	12	2.1	12	100	0	50	44	0	0	56	0.99
6689866--6689959	28	3.4	28	82	5	93	27	19	18	35	1.95
6702791--6702824	15	2.3	15	89	0	50	70	0	11	17	1.16
6705314--6705475	80	2.0	80	97	0	306	35	11	13	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6705801--6705847	9	5.2	9	94	0	85	44	12	10	31	1.77
6706993--6707039	18	2.5	19	77	16	53	0	29	6	63	1.19
6709220--6709253	2	17.0	2	100	0	68	0	50	0	50	1.00
6716537--6716609	16	4.4	16	69	10	58	52	1	1	45	1.18
6720388--6720429	19	2.2	20	91	4	68	42	0	7	50	1.30
6725177--6725269	14	6.5	13	72	25	57	24	9	2	63	1.36
6725210--6725274	29	2.2	30	79	17	75	27	7	0	64	1.20
6725239--6725284	15	2.9	15	90	6	65	26	6	0	67	1.15
6725251--6725317	21	3.0	23	76	21	72	29	5	0	64	1.17
6731868--6732375	177	2.9	177	84	1	651	31	18	21	28	1.97
6732276--6732463	88	2.1	88	89	0	286	30	19	19	30	1.97
6732411--6732506	44	2.2	46	82	16	114	34	16	20	28	1.95
6732362--6732984	178	3.5	178	88	1	901	30	18	22	29	1.97
6733957--6734079	14	8.5	15	67	20	50	26	5	0	67	1.13
6733959--6734089	18	7.3	18	72	19	69	26	6	0	67	1.14
6733960--6734069	29	3.8	30	69	17	79	27	6	0	66	1.16
6734034--6734079	15	2.9	15	90	6	65	26	6	0	67	1.15
6734154--6734207	24	2.2	24	83	9	65	24	5	0	70	1.08
6737052--6737080	13	2.2	13	100	0	58	48	24	13	13	1.79
6737234--6737266	11	2.9	12	86	13	52	33	0	0	66	0.92
6737447--6737505	11	5.4	11	87	0	73	59	3	10	27	1.46
6739167--6739211	12	3.9	12	82	5	58	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6739630--6739714	42	2.0	42	86	0	116	47	10	16	25	1.79
6743956--6744016	19	3.1	19	81	9	70	47	1	0	50	1.10
6748379--6748431	18	2.9	18	100	0	106	22	22	20	33	1.97
6751716--6751761	19	2.4	20	82	10	60	63	4	0	32	1.14
6751706--6751760	19	2.9	18	84	10	58	60	5	0	34	1.20
6753648--6753725	37	2.1	37	95	0	138	48	7	7	35	1.61
6759703--6759737	18	1.9	18	100	0	70	48	11	0	40	1.39
6762619--6762674	17	3.2	17	77	20	53	69	0	0	30	0.89
6762624--6762672	20	2.5	19	87	6	71	69	0	0	30	0.89
6762623--6762670	24	2.1	22	84	7	60	68	0	0	31	0.90
6762624--6762693	20	3.3	20	82	13	70	68	0	0	31	0.90
6766293--6766351	26	2.2	27	90	3	93	22	6	1	69	1.21
6766276--6766365	27	3.4	28	77	10	89	25	4	2	67	1.20
6766356--6766453	16	6.1	16	67	17	51	32	2	2	63	1.17
6767294--6767327	14	2.4	14	90	0	50	41	8	17	32	1.80
6767303--6767332	14	2.1	14	93	0	51	36	6	16	40	1.75
6767829--6767865	16	2.3	17	86	13	60	40	0	0	59	0.97
6768508--6768701	34	5.5	34	75	10	151	35	20	15	28	1.94
6768790--6768862	8	8.8	8	70	19	51	31	2	1	64	1.16
6768838--6768934	27	3.5	26	80	8	113	35	2	3	59	1.24
6768838--6768905	35	1.9	35	82	5	84	32	1	2	63	1.18
6768982--6769064	17	4.8	17	75	18	55	27	1	3	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6769016--6769061	19	2.4	19	88	0	74	23	0	2	73	0.94
6769347--6769389	23	2.0	23	90	9	72	27	2	0	69	1.00
6769345--6769408	29	2.3	27	82	12	76	31	1	0	67	1.00
6778390--6778562	89	1.9	91	83	2	224	47	9	6	35	1.63
6779059--6779100	22	2.0	22	85	4	59	7	11	21	59	1.56
6780294--6780360	28	2.4	28	75	9	66	64	2	2	29	1.23
6784627--6784680	20	2.8	20	74	2	65	62	1	0	35	1.06
6784890--6784948	30	1.9	30	86	3	82	28	22	1	47	1.61
6784890--6784958	30	2.3	31	82	7	79	28	20	4	46	1.70
6787116--6787381	103	2.6	104	91	0	426	19	20	30	29	1.97
6794608--6794873	103	2.6	104	91	0	426	19	20	30	29	1.97
6798614--6798967	176	2.0	177	92	0	593	22	14	18	43	1.87
6802519--6802556	3	12.7	3	100	0	76	65	0	0	34	0.93
6806013--6806085	22	3.3	21	78	3	74	16	9	13	60	1.59
6812433--6812466	11	2.9	12	82	8	52	70	0	5	23	1.09
6814397--6814489	48	1.9	48	91	0	150	31	27	20	20	1.97
6815522--6815577	21	2.7	21	81	8	62	64	0	3	32	1.11
6817318--6817369	24	2.2	24	89	0	77	55	9	1	32	1.43
6819288--6819339	24	2.2	24	89	0	77	55	9	1	32	1.43
6824128--6824153	12	2.2	12	100	0	52	46	7	0	46	1.31
6829071--6829138	27	2.5	27	82	0	82	16	22	36	25	1.94
6832903--6832934	3	10.7	3	93	0	55	65	0	31	3	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6838638--6838710	36	2.0	36	97	0	137	30	15	13	41	1.85
6839656--6839872	105	2.1	101	81	5	238	33	15	24	27	1.95
6842024--6842522	88	5.6	88	85	3	599	22	23	21	32	1.98
6842024--6842543	178	2.9	179	86	1	690	22	23	21	32	1.98
6842058--6842480	44	9.6	44	65	16	178	22	23	21	33	1.98
6842195--6842515	44	7.2	44	68	15	196	21	24	21	32	1.98
6842997--6843036	21	1.9	21	94	0	71	35	12	10	42	1.76
6849371--6849430	23	2.8	21	76	16	61	63	0	11	25	1.28
6849387--6849446	17	3.4	18	77	15	54	60	0	11	28	1.32
6849404--6849460	30	1.9	29	86	10	80	61	0	10	28	1.29
6849410--6849456	15	3.1	15	77	17	53	63	0	8	27	1.23
6853506--6853573	34	2.0	34	100	0	136	38	2	17	41	1.65
6856749--6856774	6	4.3	6	100	0	52	15	0	0	84	0.62
6859604--6859644	21	2.0	21	85	9	57	31	0	2	65	1.05
6867587--6867620	13	2.6	13	90	9	52	64	8	8	17	1.47
6871096--6871137	21	2.0	21	100	0	84	47	0	0	52	1.00
6874831--6874899	29	2.3	30	80	11	72	36	7	4	52	1.49
6879266--6879342	3	26.0	3	70	12	52	32	5	3	58	1.38
6879263--6879313	12	4.2	12	82	7	59	31	1	3	62	1.24
6879525--6879574	21	2.5	20	81	9	59	36	2	6	56	1.36
6879639--6879695	24	2.4	23	83	13	71	38	3	3	54	1.35
6879639--6879771	13	10.6	11	67	25	52	37	4	3	54	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6879725--6879843	26	4.4	28	71	22	92	39	5	3	52	1.40
6879683--6879836	25	5.8	26	72	18	81	38	5	2	53	1.37
6892060--6892471	75	5.5	75	91	1	574	29	15	19	35	1.92
6892490--6892518	14	2.1	14	100	0	58	20	13	6	58	1.58
6892414--6892655	86	2.8	85	77	14	235	27	16	19	36	1.94
6894218--6894309	3	30.7	3	71	12	64	31	3	3	61	1.28
6894407--6894464	26	2.3	26	91	5	93	41	5	3	50	1.42
6894530--6894592	23	2.9	21	84	13	67	38	3	6	52	1.43
6894645--6894707	24	2.6	24	83	11	76	38	4	4	52	1.44
6899947--6900057	47	2.4	47	84	6	154	35	23	16	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167