genome.fa.s23.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  138  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46245606--46245644	19	2.0	20	85	5	53	35	5	0	58	1.20
46268433--46268480	22	2.2	22	96	3	89	20	8	18	52	1.71
46270935--46270980	15	3.0	15	83	3	56	78	0	19	2	0.86
46272782--46272822	21	2.0	21	85	0	55	26	2	36	34	1.70
46272773--46272885	56	2.0	55	98	1	217	23	7	39	28	1.81
46272836--46272891	21	2.7	21	80	0	67	28	5	35	30	1.80
46274914--46274990	28	2.7	29	73	15	88	42	2	0	54	1.14
46286740--46286894	46	3.4	46	94	0	256	41	14	23	20	1.89
46286740--46286949	46	4.5	46	89	3	233	41	14	23	20	1.89
46289160--46290142	196	5.0	196	99	0	1930	34	5	21	38	1.75
46290577--46290731	43	3.6	42	78	9	154	23	16	26	33	1.95
46294057--46294114	26	2.2	26	96	3	107	48	6	20	24	1.74
46296338--46296430	39	2.5	37	80	7	98	27	29	22	20	1.98
46297525--46297558	17	2.1	16	88	5	50	2	14	5	76	1.09
46297579--46297610	16	1.9	17	93	6	57	53	3	0	43	1.16
46300413--46300534	43	2.9	42	74	2	127	25	13	25	35	1.93
46303148--46303200	21	2.5	21	81	6	63	45	18	20	15	1.85
46303197--46303240	21	2.1	21	86	0	61	52	18	20	9	1.72
46306488--46306575	39	2.2	40	82	7	101	45	14	9	30	1.76
46306496--46306564	19	3.6	19	68	14	52	44	14	7	33	1.73
46314291--46314342	23	2.3	22	75	21	54	9	23	1	65	1.32
46316520--46316620	32	3.2	32	88	2	141	41	18	17	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46316788--46317088	27	11.2	27	85	4	306	19	19	19	40	1.91
46316788--46317087	134	2.2	134	82	2	316	20	19	19	40	1.92
46319522--46319692	32	5.4	32	85	2	211	39	18	21	21	1.92
46319536--46319692	64	2.5	64	90	2	235	38	17	21	21	1.93
46319894--46319997	24	4.3	24	87	4	131	41	20	8	29	1.82
46320056--46320480	27	15.8	27	75	8	183	21	18	21	38	1.93
46320072--46320480	54	7.6	53	80	8	353	21	19	20	38	1.93
46320074--46320480	107	3.8	105	78	7	390	21	19	20	38	1.93
46325477--46325595	57	2.1	58	84	4	152	46	7	19	26	1.76
46325790--46325835	23	2.0	23	95	0	83	54	15	0	30	1.41
46331527--46331603	30	2.6	30	91	0	127	12	32	32	22	1.92
46335439--46335485	22	2.1	22	96	0	85	46	25	12	14	1.80
46335944--46335974	9	3.4	9	95	0	53	35	0	6	58	1.24
46342643--46342703	21	2.8	22	85	2	79	31	4	29	34	1.79
46343562--46343664	50	2.1	50	98	0	197	42	17	14	25	1.87
46355319--46355377	18	3.1	19	75	20	52	67	3	23	5	1.26
46355321--46355379	20	2.9	21	74	20	63	69	3	22	5	1.23
46359773--46359819	20	2.3	20	82	17	62	25	29	17	27	1.97
46361385--46361410	9	2.9	9	100	0	52	92	0	7	0	0.39
46361374--46361414	19	2.1	19	90	4	64	87	2	7	2	0.70
46361374--46361414	10	4.2	10	87	6	57	87	2	7	2	0.70
46362698--46362760	21	3.0	21	83	2	72	33	30	4	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46372080--46372117	20	1.9	20	89	10	60	23	18	31	26	1.97
46376248--46376390	45	3.2	45	90	0	223	38	16	19	25	1.92
46385765--46385797	6	5.5	6	100	0	66	48	18	0	33	1.48
46393263--46393316	15	3.4	15	71	14	54	62	0	0	37	0.95
46393272--46393329	8	7.0	8	75	13	55	70	0	0	29	0.87
46393263--46393329	33	2.0	33	100	0	134	67	0	0	32	0.91
46393263--46393341	33	2.4	32	91	8	117	63	1	0	35	1.03
46396649--46396690	21	2.0	21	85	0	57	35	0	26	38	1.57
46397126--46397199	27	2.8	26	87	8	105	16	24	21	37	1.93
46400898--46400934	19	2.0	18	89	5	56	62	2	5	29	1.31
46401646--46401673	12	2.3	12	100	0	56	32	14	0	53	1.41
46409916--46410045	66	2.0	66	96	0	242	33	18	13	34	1.90
46410919--46411050	61	2.2	61	97	0	246	33	9	20	36	1.86
46412955--46412991	13	2.8	13	87	0	56	67	0	0	32	0.91
46413326--46413385	28	2.1	29	84	6	79	26	3	5	65	1.29
46413484--46413539	22	2.6	22	80	2	60	25	1	5	67	1.21
46415945--46416004	21	2.9	21	82	0	75	38	5	20	36	1.74
46415987--46416032	18	2.6	17	83	10	56	30	8	23	36	1.85
46427499--46427529	15	2.1	14	94	5	53	54	6	3	35	1.42
46427516--46427584	21	3.4	20	71	16	70	55	7	1	36	1.37
46437007--46437060	23	2.3	23	84	6	74	46	0	3	50	1.19
46438153--46438297	76	1.9	75	95	1	263	24	28	8	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46440337--46440384	24	2.0	24	88	8	71	58	2	27	12	1.46
46447266--46447317	24	2.2	24	100	0	104	42	25	3	28	1.72
46447726--46447810	44	2.0	42	84	9	109	34	22	12	30	1.92
46447856--46448084	44	4.8	49	72	12	140	27	20	18	32	1.96
46450300--46450335	15	2.4	15	90	0	54	30	2	0	66	1.06
46450296--46450344	19	2.5	20	80	3	55	30	2	0	67	1.02
46450366--46450407	17	2.5	17	82	17	52	16	11	0	71	1.14
46450419--46450473	21	2.6	21	85	8	67	27	10	0	61	1.29
46450433--46450480	21	2.3	21	86	13	64	27	8	0	64	1.22
46450554--46450586	3	11.0	3	93	0	57	30	0	3	66	1.06
46452099--46452134	18	2.0	18	100	0	72	50	27	11	11	1.72
46467725--46467906	46	4.0	46	86	1	222	40	14	23	21	1.90
46468168--46468213	23	1.9	25	82	8	60	54	2	15	28	1.53
46469958--46470080	47	2.6	48	80	2	140	27	22	21	27	1.99
46469879--46470104	48	4.9	47	70	13	171	26	20	24	28	1.99
46470601--46470634	14	2.4	14	95	0	59	29	14	32	23	1.94
46471826--46471880	19	2.8	19	86	10	76	49	7	16	27	1.72
46479063--46479160	23	4.3	23	90	2	162	20	21	26	31	1.98
46479065--46479153	45	2.0	45	95	0	160	19	22	26	31	1.97
46481989--46482021	9	3.7	9	95	0	57	36	0	39	24	1.56
46481986--46482034	9	5.4	9	82	7	55	40	0	34	24	1.55
46482158--46482194	2	18.5	2	94	0	65	51	45	0	2	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46487775--46487804	15	2.1	15	93	6	53	0	6	10	83	0.81
46494991--46495024	16	2.1	16	88	0	50	50	14	17	17	1.79
46497826--46497866	21	2.0	21	90	0	64	29	21	29	19	1.98
46502846--46502878	3	11.0	3	100	0	66	66	0	0	33	0.92
46506925--46506954	8	3.8	8	95	0	51	76	16	6	0	0.99
46509866--46509903	19	2.0	19	94	0	67	44	21	13	21	1.85
46510802--46510832	3	10.3	3	100	0	62	32	0	0	67	0.91
46517284--46517309	6	4.3	6	100	0	52	15	0	0	84	0.62
46521154--46521196	14	3.1	13	83	10	50	51	18	0	30	1.47
46521154--46521238	21	4.2	20	75	11	82	49	20	1	29	1.56
46521158--46521251	21	4.5	21	71	7	66	48	20	1	29	1.56
46521212--46521247	14	2.7	13	83	8	54	44	27	0	27	1.55
46524103--46524242	43	3.3	43	82	0	172	25	26	17	30	1.98
46524486--46524537	9	5.8	9	95	0	86	38	28	9	23	1.86
46525282--46525363	40	2.0	40	88	0	119	32	21	20	24	1.98
46526654--46526803	9	15.9	9	66	16	63	36	5	1	56	1.30
46526694--46526794	19	5.3	18	78	13	73	32	5	1	59	1.33
46526665--46526765	39	2.6	39	75	12	100	34	5	0	58	1.29
46527020--46527350	64	5.2	64	76	7	368	15	13	22	48	1.80
46527020--46527350	127	2.6	127	95	0	581	15	13	22	48	1.80
46530369--46530412	16	2.7	16	89	3	61	54	9	0	36	1.32
46530477--46530518	16	2.6	16	92	0	66	45	4	0	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46532460--46532555	48	2.0	48	97	0	183	21	20	30	27	1.98
46534034--46534060	14	1.9	14	100	0	54	37	7	14	40	1.74
46535191--46535220	15	2.0	15	93	0	51	43	6	10	40	1.64
46538675--46538760	44	2.0	44	95	0	154	44	9	17	29	1.80
46539108--46539160	20	2.7	20	85	8	65	45	0	3	50	1.19
46539057--46539144	46	2.0	45	84	8	117	36	2	3	57	1.28
46541208--46541668	104	4.4	104	80	14	477	41	14	15	28	1.86
46541241--46541660	101	4.1	97	82	13	427	39	14	16	30	1.88
46542348--46542402	29	1.9	28	85	10	76	60	7	3	29	1.41
46542345--46542411	29	2.3	29	77	10	75	58	7	2	31	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167