genome.fa.s23.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  108  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35911488--35911542	24	2.3	24	83	0	65	16	25	21	36	1.94
35911498--35911553	24	2.3	24	87	0	76	17	21	19	41	1.91
35913039--35913093	25	2.3	23	78	12	58	43	3	16	36	1.65
35913149--35913223	22	3.3	22	75	10	69	60	5	5	29	1.41
35913155--35913217	25	2.5	24	84	7	72	58	6	4	30	1.43
35913239--35913347	23	4.7	24	77	5	82	53	5	6	34	1.50
35913651--35913689	16	2.4	16	86	0	51	43	28	5	23	1.75
35913852--35913905	18	3.3	18	66	28	57	20	7	50	22	1.73
35913847--35913941	30	3.3	30	91	5	153	14	6	52	26	1.65
35914654--35915227	91	6.7	87	76	13	437	35	18	16	29	1.93
35914957--35914989	14	2.4	14	94	0	57	63	6	12	18	1.48
35914740--35915227	177	2.8	172	78	12	490	35	18	17	28	1.94
35915067--35916692	75	21.9	75	92	2	2456	33	20	16	30	1.94
35916805--35916955	73	2.1	73	93	0	257	33	23	17	25	1.97
35929057--35929111	25	2.3	23	78	12	58	43	3	16	36	1.65
35933603--35933650	20	2.5	20	78	18	57	29	18	25	27	1.98
35933670--35933789	60	2.0	59	85	3	150	30	18	25	25	1.98
35935894--35935945	24	2.2	24	83	13	63	38	0	1	59	1.08
35939682--35939840	41	3.9	41	77	6	144	35	23	18	22	1.95
35939852--35939918	35	2.0	32	82	8	80	41	16	5	35	1.73
35947164--35947219	26	2.2	26	96	0	103	35	25	7	32	1.83
35947187--35947341	81	1.9	81	94	0	274	33	16	11	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35947893--35947959	21	3.2	21	72	8	64	50	23	0	25	1.49
35948113--35948192	38	2.2	38	90	4	128	26	2	25	46	1.65
35952271--35952315	14	3.5	14	77	22	62	44	13	4	37	1.64
35952264--35952314	24	2.1	24	96	0	93	45	9	3	41	1.56
35952828--35953006	76	2.4	76	99	0	349	35	15	2	46	1.61
35953223--35953268	23	2.0	23	95	0	83	43	2	13	41	1.55
35953225--35953284	23	2.6	22	82	12	68	48	1	10	40	1.47
35953768--35953809	16	2.6	17	81	11	52	35	0	7	57	1.26
35953972--35954254	9	32.6	9	75	9	187	47	16	0	35	1.52
35953958--35954143	26	7.1	26	73	13	116	48	14	1	36	1.51
35953956--35954179	114	2.0	114	97	0	421	47	14	0	36	1.51
35954105--35954268	26	6.1	25	69	19	75	48	15	0	35	1.49
35954048--35954213	80	2.1	79	87	8	250	47	16	0	35	1.51
35954134--35954264	57	2.4	54	79	12	151	48	17	0	34	1.48
35954173--35954268	48	2.0	48	100	0	156	50	16	0	33	1.46
35954312--35954343	7	4.6	7	92	0	55	31	9	15	43	1.78
35956740--35957574	52	16.1	52	99	0	1643	34	9	23	32	1.87
35963286--35964120	26	32.1	26	89	0	1301	33	7	24	34	1.84
35963286--35964120	78	10.7	78	99	0	1643	33	7	24	34	1.84
35967640--35967687	20	2.5	20	96	3	89	64	31	0	4	1.12
35967640--35967698	20	3.0	20	82	5	57	64	30	1	3	1.20
35980472--35980649	62	2.9	62	99	0	347	32	16	26	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35980596--35981204	76	8.0	76	89	7	827	29	17	22	30	1.97
35980594--35981361	228	3.3	225	85	10	962	29	17	22	29	1.97
35981217--35981361	75	1.9	76	87	5	213	33	18	22	25	1.96
35981048--35981603	169	3.2	170	88	7	734	30	18	20	31	1.96
35981295--35981692	87	4.4	88	81	9	382	29	17	19	34	1.94
35981276--35981692	181	2.3	178	81	8	438	29	16	18	35	1.93
35981295--35981729	179	2.4	177	80	8	411	27	17	19	35	1.94
35981296--35981792	87	5.6	89	77	11	362	28	16	19	35	1.94
35982258--35982340	27	3.1	27	85	11	109	73	16	4	4	1.18
35982258--35982338	28	3.0	27	84	12	103	72	17	4	4	1.20
35982815--35982849	16	2.3	15	90	5	52	31	2	2	62	1.24
35983128--35983218	46	2.0	46	95	0	164	28	15	26	29	1.96
35986214--35986276	21	3.0	21	83	4	74	28	22	44	4	1.73
35986582--35986663	43	1.9	43	84	0	110	28	28	18	25	1.98
36003852--36003884	9	3.7	9	95	0	57	54	12	30	3	1.52
36004269--36004347	38	2.1	37	86	6	106	26	30	17	25	1.97
36004466--36004615	47	3.2	47	85	0	201	26	32	10	30	1.90
36007263--36007300	20	1.9	20	88	0	58	21	10	31	36	1.87
36011093--36011167	39	1.9	39	88	0	114	26	9	21	42	1.83
36017087--36017168	40	2.0	41	88	6	123	19	32	7	40	1.79
36017503--36017673	46	3.7	46	78	6	173	29	16	28	24	1.97
36017503--36017716	94	2.3	94	79	1	223	29	18	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36023632--36023798	45	3.7	45	88	0	226	28	20	28	22	1.99
36025075--36025113	21	1.9	21	94	5	71	15	38	25	20	1.92
36027019--36027293	139	2.0	139	98	0	532	23	21	25	30	1.99
36027574--36027688	58	2.0	58	98	0	221	29	23	26	20	1.98
36036704--36036968	40	6.7	40	89	4	274	26	22	27	24	2.00
36036797--36037001	79	2.6	77	84	9	243	27	20	26	24	1.99
36043624--36044024	200	2.0	200	97	0	757	22	13	29	34	1.92
36044905--36045054	39	3.8	39	87	6	198	24	23	28	23	1.99
36046264--36046340	39	2.0	39	100	0	154	31	18	22	28	1.97
36049210--36049387	27	6.6	27	83	5	180	28	28	16	26	1.97
36049231--36049386	82	1.9	81	86	3	224	28	28	16	26	1.97
36056709--36056856	40	3.7	40	93	0	251	31	20	27	21	1.98
36059637--36059869	40	5.8	40	88	1	322	24	26	21	26	2.00
36059637--36059869	120	1.9	121	89	0	360	24	26	21	26	2.00
36061139--36061320	37	4.9	37	95	0	301	25	29	19	25	1.98
36061483--36061600	47	2.5	47	90	0	182	24	28	12	33	1.92
36061517--36061621	47	2.2	47	87	0	147	26	30	10	32	1.90
36070802--36071103	74	4.1	74	98	0	568	43	12	8	35	1.73
36071353--36071586	55	4.4	53	78	9	237	35	17	24	22	1.95
36071360--36071560	108	1.8	110	86	4	291	33	17	25	23	1.96
36072122--36072193	34	2.1	34	92	2	119	22	26	19	31	1.97
36075918--36075965	19	2.5	19	82	0	60	39	16	18	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36080266--36080386	42	2.8	43	78	5	129	24	21	26	27	1.99
36080266--36080386	43	2.8	42	79	7	111	24	21	26	27	1.99
36082040--36082112	34	2.2	34	87	7	105	26	21	24	27	2.00
36082040--36082143	34	3.1	34	82	6	97	24	22	25	27	1.99
36088091--36088302	102	2.1	102	97	0	399	28	19	17	33	1.95
36088761--36088923	82	2.0	82	98	0	317	26	16	26	29	1.97
36090346--36090565	79	2.8	79	79	8	225	26	21	26	25	1.99
36090346--36090530	40	4.7	40	82	6	216	24	22	27	25	2.00
36091411--36091435	13	1.9	13	100	0	50	8	0	24	68	1.16
36091662--36091786	39	3.1	40	68	21	125	60	4	4	29	1.38
36091638--36091796	80	2.0	82	97	2	304	61	3	4	30	1.34
36093057--36093168	41	2.7	42	87	9	167	30	20	20	28	1.98
36093383--36093446	33	2.0	32	90	3	101	26	9	25	39	1.86
36093390--36093463	33	2.3	33	80	2	87	28	8	25	37	1.84
36102055--36102268	94	2.3	94	81	3	234	23	26	20	29	1.99
36107799--36108016	46	4.7	45	78	12	185	26	28	17	27	1.98
36113545--36113606	20	3.3	20	67	28	64	19	20	24	35	1.96
36113545--36113616	35	2.1	35	100	0	144	22	19	23	34	1.96
36115463--36115532	30	2.3	30	90	4	106	44	24	15	15	1.86
36126392--36126427	15	2.3	16	90	4	56	50	25	0	25	1.50
36128247--36128338	45	2.0	45	100	0	184	23	8	13	54	1.66
36132850--36132909	24	2.7	23	87	10	88	48	13	0	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36132863--36132916	24	2.2	24	96	0	99	46	11	1	40	1.50
36132863--36132928	24	2.8	24	90	4	89	48	10	1	39	1.47
36134953--36135051	49	2.0	49	100	0	198	35	20	14	30	1.92
36135357--36135392	15	2.4	15	90	0	54	47	2	2	47	1.31
36137067--36137180	55	2.1	55	93	6	196	20	9	33	36	1.85
36145549--36145658	41	2.7	41	80	5	123	25	22	28	23	2.00
36157011--36157041	15	2.0	16	93	6	55	16	32	6	45	1.72
36162337--36162429	48	1.9	48	97	0	177	22	12	31	33	1.92
36169730--36169800	36	2.0	36	97	0	133	26	25	5	42	1.77
36176054--36176157	24	4.2	24	76	12	95	5	28	6	58	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167