genome.fa.s23.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  50  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15450339--15450445	27	3.9	27	81	11	112	43	15	8	31	1.77
15450700--15450818	41	2.9	41	87	0	166	24	20	27	27	1.99
15451308--15451333	11	2.4	11	100	0	52	26	0	19	53	1.45
15452511--15453407	24	37.4	24	97	1	1692	25	20	24	29	1.99
15453464--15453520	9	5.9	9	73	15	51	35	21	8	35	1.84
15453452--15453522	20	3.5	20	94	0	124	32	21	11	35	1.89
15453457--15453511	11	5.4	11	70	16	55	30	20	12	36	1.90
15456600--15456815	46	4.7	47	79	12	200	27	20	29	22	1.98
15460077--15460131	21	2.6	21	91	0	92	16	34	32	16	1.91
15461057--15461120	31	2.1	31	84	0	83	25	21	14	39	1.91
15461315--15461530	25	9.0	24	84	5	242	29	21	20	28	1.98
15461336--15461529	23	8.1	23	87	5	244	30	20	20	28	1.97
15461338--15461523	98	1.9	95	89	3	282	31	20	20	27	1.97
15461576--15461659	20	4.2	20	95	0	150	32	21	11	34	1.90
15461588--15461662	9	7.7	9	69	16	51	33	21	10	34	1.88
15461581--15461655	11	7.4	11	68	17	63	30	20	13	36	1.91
15462908--15462991	27	3.1	27	89	3	125	21	26	21	30	1.98
15463053--15463137	27	3.1	27	79	14	84	37	9	14	38	1.78
15463088--15463150	27	2.2	29	86	5	85	30	6	20	42	1.77
15463143--15463321	27	6.7	26	85	5	223	30	7	18	43	1.77
15463143--15463335	81	2.4	80	86	5	255	30	7	20	41	1.79
15463313--15463470	27	5.9	27	89	0	208	38	9	24	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15463303--15463497	81	2.4	79	77	5	192	35	9	24	30	1.87
15463327--15463497	54	3.2	54	82	0	180	36	10	25	28	1.89
15466777--15466930	42	3.6	42	80	10	141	26	18	25	28	1.98
15466764--15466929	43	3.8	43	77	12	160	26	18	25	29	1.98
15468894--15468945	27	2.0	26	84	3	68	34	21	26	17	1.95
15478125--15478191	15	4.5	15	78	16	59	13	13	13	59	1.61
15478112--15478191	30	2.7	30	79	11	92	12	13	15	58	1.63
15480598--15480773	46	3.8	46	75	16	184	21	18	28	32	1.96
15480594--15480766	93	1.9	93	91	4	287	21	18	28	31	1.97
15488432--15488704	48	5.7	48	98	0	519	31	25	6	36	1.82
15490651--15490743	25	3.7	25	82	5	125	22	30	12	34	1.92
15490643--15490743	50	2.0	50	100	0	202	21	31	12	33	1.91
15490919--15491220	40	7.6	40	87	0	415	26	29	20	24	1.99
15493222--15494291	48	22.3	48	98	0	2016	32	28	6	32	1.82
15494208--15494372	81	2.0	81	90	2	260	33	27	5	33	1.80
15494256--15494324	33	2.1	33	97	0	129	37	26	2	33	1.71
15494160--15494395	129	1.8	129	87	0	355	32	27	5	34	1.81
15496344--15496414	29	2.5	29	86	2	90	25	16	29	28	1.97
15498978--15499090	43	2.7	43	83	6	149	30	24	15	29	1.95
15502240--15502301	31	2.0	31	96	0	115	24	19	8	48	1.75
15505757--15505817	9	6.1	9	74	20	50	37	3	0	59	1.14
15505756--15505871	20	5.8	19	80	14	128	35	4	0	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15505845--15505888	18	2.6	17	85	7	54	31	4	2	61	1.28
15506172--15506233	21	2.9	21	76	11	72	40	1	0	58	1.08
15518091--15518285	87	2.2	87	99	0	381	28	16	24	31	1.96
15518091--15518307	87	2.5	87	93	1	328	29	15	23	30	1.96
15518383--15518573	87	2.2	87	100	0	382	28	15	24	31	1.96
15518048--15518779	292	2.5	291	91	2	1171	30	17	22	29	1.97
15520451--15520574	7	19.3	6	70	21	51	33	4	1	60	1.25
15520452--15520579	12	11.1	12	68	26	55	34	3	1	60	1.25
15520472--15520579	20	5.4	19	73	19	78	36	4	0	58	1.25
15520491--15520540	22	2.3	22	83	13	59	38	8	0	54	1.30
15520452--15520579	25	5.2	23	68	25	57	34	3	1	60	1.25
15520882--15520943	21	2.9	21	76	11	72	40	1	0	58	1.08
15521063--15521101	16	2.3	18	91	8	64	28	2	12	56	1.50
15535228--15535287	30	2.0	30	90	0	93	30	25	8	36	1.85
15541678--15541785	54	2.0	54	90	3	173	39	19	19	21	1.92
15548919--15549146	47	4.8	47	74	12	139	27	18	29	24	1.98
15548920--15549097	99	1.8	94	82	8	223	27	17	29	25	1.97
15554671--15554771	27	3.8	27	76	1	96	19	22	21	35	1.96
15554910--15554980	28	2.5	27	84	4	88	23	21	25	29	1.99
15559163--15559222	25	2.4	26	81	10	72	48	0	5	46	1.24
15561316--15561341	7	3.7	7	100	0	52	73	0	15	11	1.11
15566137--15566329	48	4.1	48	69	16	150	25	19	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15567243--15567297	21	2.6	21	76	0	56	27	27	29	16	1.97
15571932--15572049	40	3.0	40	97	0	218	22	19	29	28	1.98
15574162--15574240	37	2.1	37	90	0	122	25	31	18	24	1.98
15574358--15574629	47	5.7	47	94	3	463	28	30	9	31	1.89
15574358--15574629	96	2.8	94	93	3	472	28	30	9	31	1.89
15591975--15592199	46	4.8	48	75	9	180	24	33	15	27	1.95
15591877--15592199	47	6.8	48	73	11	240	24	31	17	27	1.97
15599188--15599295	53	2.0	53	83	3	137	37	19	25	18	1.94
15600487--15600827	174	2.0	173	90	0	538	29	17	21	32	1.96
15604859--15605014	27	5.8	27	84	3	172	28	23	8	39	1.84
15604993--15605187	81	2.4	80	86	4	250	39	21	9	30	1.84
15605007--15605192	27	6.9	26	78	8	169	40	19	9	30	1.84
15604993--15605213	54	4.1	54	76	11	147	39	20	9	29	1.84
15605224--15605275	27	1.9	27	88	7	79	40	11	11	36	1.78
15605329--15605420	27	3.4	27	87	3	123	33	19	26	20	1.96
15606577--15606624	25	2.0	24	83	4	60	31	25	18	25	1.98
15606736--15606903	24	7.0	24	88	5	243	30	23	20	25	1.98
15607097--15607160	31	2.1	31	90	0	101	37	14	23	25	1.92
15612545--15612652	27	4.0	26	82	5	108	37	19	23	20	1.95
15612547--15612670	27	4.7	26	79	8	90	37	16	23	21	1.93
15612811--15612875	22	3.0	21	73	13	60	32	23	24	20	1.98
15613263--15613485	27	8.3	27	87	1	288	24	20	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15613267--15613485	80	2.7	81	85	2	309	24	20	18	36	1.95
15614852--15615077	40	5.7	40	91	4	323	26	27	21	24	1.99
15621994--15622165	40	4.3	40	87	5	242	26	27	20	24	1.99
15621994--15622216	80	2.8	81	83	8	271	26	27	21	24	1.99
15621996--15622216	119	1.9	120	81	6	279	26	27	21	24	1.99
15623461--15623502	15	2.4	18	74	25	54	26	21	19	33	1.97
15623472--15623500	15	1.9	15	100	0	58	31	20	20	27	1.98
15623523--15623590	27	2.5	27	73	0	73	33	8	20	36	1.84
15630972--15631017	22	2.1	22	100	0	92	47	8	13	30	1.72
15631488--15631531	22	2.0	22	95	0	79	40	6	9	43	1.63
15631883--15631917	18	2.0	17	88	5	52	65	0	0	34	0.93
15638135--15638211	40	1.9	40	89	5	120	28	18	12	40	1.87
15653607--15653668	10	6.6	10	72	9	51	33	0	3	62	1.11
15653607--15653661	17	3.0	18	81	10	67	32	0	3	63	1.12
15655895--15655952	24	2.4	24	85	8	82	39	5	0	55	1.22
15655858--15656068	106	2.0	106	82	6	261	38	3	4	53	1.40
15655879--15656095	106	2.0	106	80	6	235	36	2	5	55	1.36
15660287--15660439	27	5.7	26	76	12	114	39	20	9	30	1.84
15660279--15660455	54	3.3	54	81	5	207	38	20	9	31	1.84
15660433--15660850	27	15.4	27	81	4	322	32	22	8	37	1.85
15660663--15660735	28	2.6	28	91	2	112	42	20	8	28	1.81
15660688--15660767	28	2.9	27	83	3	88	40	22	11	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15660433--15660850	81	5.1	81	77	3	399	32	22	8	37	1.85
15660855--15661375	27	19.3	27	87	3	647	35	19	19	24	1.95
15661597--15661817	67	3.3	67	97	0	406	19	28	21	31	1.97
15661924--15661987	25	2.6	25	89	0	92	18	17	17	46	1.84
15661924--15662041	6	19.2	6	76	14	107	17	17	16	48	1.82
15661942--15662036	37	2.6	37	87	0	145	16	18	16	47	1.83
15661924--15662041	19	6.4	18	77	14	107	17	17	16	48	1.82
15662945--15662979	2	17.5	2	93	0	61	51	45	2	0	1.16
15664295--15664354	25	2.4	24	81	8	66	28	18	30	23	1.98
15667820--15668606	40	19.7	40	97	0	1416	24	25	24	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167