genome.fa.s23.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  152  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50198589--50200196	175	9.2	175	97	0	2823	32	18	21	28	1.97
50198676--50200253	87	18.1	88	71	13	405	32	18	21	28	1.97
50200269--50200515	50	4.9	50	75	4	219	36	23	17	22	1.94
50200269--50200535	100	2.7	100	85	0	336	37	22	16	22	1.94
50201644--50201830	93	2.0	94	95	1	340	19	23	13	42	1.87
50202454--50202908	227	2.0	228	99	0	903	29	7	11	52	1.65
50205453--50205547	34	2.7	34	88	4	127	44	6	16	32	1.73
50207217--50207248	13	2.5	13	94	0	55	43	6	6	43	1.54
50207561--50207594	16	2.1	16	100	0	68	38	11	0	50	1.39
50210792--50210844	25	2.3	23	79	17	65	37	13	9	39	1.77
50217626--50217664	16	2.4	17	86	4	53	25	17	2	53	1.56
50218739--50218773	9	4.0	9	88	3	54	22	2	0	74	0.95
50219491--50219535	16	2.8	16	82	3	54	57	0	22	20	1.40
50234869--50235398	44	12.3	43	72	13	279	29	20	22	28	1.98
50234824--50235397	217	2.6	217	89	0	900	29	20	21	28	1.98
50234951--50235280	173	1.9	173	80	9	388	29	20	22	28	1.98
50235383--50235663	132	2.1	133	92	1	467	28	19	23	29	1.98
50243245--50243295	5	10.2	5	95	0	75	74	0	5	19	1.02
50245942--50245973	12	2.7	12	95	0	55	34	3	0	62	1.11
50259170--50259420	9	28.8	9	71	12	175	31	3	19	44	1.69
50259159--50259263	25	4.2	25	78	11	124	34	2	18	44	1.64
50259159--50259263	51	2.1	50	87	1	147	34	2	18	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50259565--50259700	53	2.6	53	90	0	218	45	4	11	38	1.60
50259615--50259719	13	8.0	13	75	10	79	43	3	11	40	1.59
50259873--50259956	44	1.9	44	88	9	127	47	2	4	45	1.36
50260291--50260354	7	9.3	7	76	10	69	73	12	10	3	1.21
50260291--50260354	21	3.1	21	86	6	87	73	12	10	3	1.21
50260304--50260369	14	4.8	14	79	9	73	75	10	9	4	1.16
50260358--50260401	18	2.4	19	84	3	54	56	13	15	13	1.67
50260638--50261243	301	2.0	302	96	1	1108	39	12	12	35	1.81
50261642--50262066	198	2.2	197	92	1	708	33	20	16	28	1.95
50262441--50262532	47	2.0	47	84	0	121	46	3	7	42	1.48
50262857--50262918	7	8.9	7	87	0	70	29	48	1	20	1.59
50262702--50262886	96	1.9	96	82	2	228	40	29	1	28	1.66
50262836--50262924	21	4.3	20	73	8	72	33	43	1	21	1.60
50263018--50263071	7	8.0	7	83	8	67	31	50	0	18	1.48
50263019--50263082	21	3.1	21	89	8	89	35	43	0	20	1.52
50263105--50263138	15	2.3	15	90	5	52	35	29	0	35	1.58
50263379--50263938	114	4.9	114	84	2	590	31	25	20	21	1.98
50263737--50264090	187	1.9	186	84	4	471	29	26	24	20	1.99
50264726--50264764	14	2.7	14	84	4	51	38	2	0	58	1.12
50264713--50264770	29	2.0	29	83	6	73	32	6	3	56	1.42
50268322--50268364	17	2.5	17	84	0	59	53	4	6	34	1.49
50271119--50271144	9	2.9	9	100	0	52	69	19	11	0	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50276500--50276528	12	2.4	12	100	0	58	58	0	6	34	1.25
50278198--50278479	46	5.9	49	80	11	257	28	23	19	29	1.98
50278219--50278444	91	2.4	92	82	7	276	28	22	20	28	1.99
50279734--50279775	11	3.9	11	81	6	50	0	21	0	78	0.75
50279734--50279792	27	2.2	27	81	6	66	5	22	0	72	1.03
50279811--50279856	21	2.1	21	92	8	74	26	0	8	65	1.21
50279821--50279865	21	2.1	21	83	4	54	28	2	13	55	1.50
50283221--50283387	41	4.0	41	90	0	253	22	27	19	29	1.98
50286612--50286645	16	2.1	16	88	0	50	44	20	14	20	1.87
50288125--50288157	12	2.8	12	90	0	57	66	0	3	30	1.06
50288188--50288220	3	11.0	3	100	0	66	66	0	0	33	0.92
50295925--50295999	23	3.2	24	61	21	59	32	6	30	30	1.83
50295923--50296062	46	3.0	46	91	0	208	35	7	26	30	1.85
50301919--50302036	58	2.0	58	98	0	227	25	14	13	46	1.81
50305086--50305150	32	2.1	32	85	2	87	58	3	3	35	1.29
50306484--50306614	65	2.0	65	98	0	253	34	18	11	35	1.87
50306502--50306608	30	3.4	30	65	16	81	36	20	11	31	1.88
50307713--50307752	6	6.7	6	91	0	62	77	0	0	22	0.77
50308197--50308244	22	2.2	21	85	10	69	39	18	4	37	1.70
50308200--50308244	23	2.0	22	91	4	72	40	17	4	37	1.70
50308200--50308257	19	2.8	20	84	10	64	39	17	6	36	1.76
50312646--50312682	16	2.2	17	86	13	51	54	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50312514--50312692	59	3.0	60	69	13	152	49	3	2	43	1.35
50312749--50312777	15	1.9	15	100	0	58	48	6	0	44	1.29
50312731--50312871	44	3.1	43	68	16	101	48	3	2	45	1.31
50312690--50312902	88	2.4	90	91	2	340	46	4	2	46	1.37
50318565--50318636	36	2.0	36	94	0	126	37	16	22	23	1.94
50321635--50321672	17	2.1	19	85	9	53	44	2	0	52	1.14
50321668--50321711	22	2.0	23	86	4	63	56	0	0	43	0.99
50321669--50321699	15	2.0	16	93	6	55	61	0	0	38	0.96
50321674--50321718	20	2.1	21	88	8	65	51	0	0	48	1.00
50330718--50330764	13	3.5	13	77	11	58	57	2	0	40	1.11
50330881--50330911	14	2.2	14	100	0	62	48	12	0	38	1.42
50341248--50341704	223	2.1	222	97	0	869	24	14	19	41	1.89
50345578--50345611	15	2.3	15	89	0	50	55	20	14	8	1.65
50352808--50352854	14	3.0	16	70	17	53	29	4	34	31	1.77
50359016--50359089	19	3.9	18	69	19	53	64	1	2	31	1.15
50359008--50359092	39	2.2	38	80	13	95	63	1	2	32	1.15
50371056--50371126	5	14.6	5	74	21	62	38	1	4	56	1.28
50371084--50371126	19	2.3	19	92	8	70	41	2	0	55	1.12
50371136--50371168	16	2.1	16	94	0	57	78	0	18	3	0.87
50371228--50371259	4	8.0	4	100	0	64	75	0	25	0	0.81
50371744--50371801	30	1.9	30	89	0	89	41	3	24	31	1.71
50372134--50372248	44	2.6	45	84	2	142	36	13	21	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50375211--50375306	21	4.5	21	86	2	120	37	27	21	13	1.91
50375211--50375316	42	2.5	43	82	3	133	36	26	21	15	1.93
50375211--50375318	21	5.0	22	80	9	98	37	25	22	14	1.93
50375691--50375747	15	3.9	15	90	2	89	50	12	0	36	1.40
50379237--50380584	674	2.0	674	95	0	2437	36	15	14	33	1.88
50381081--50381126	15	3.2	15	69	12	51	23	4	17	54	1.61
50381071--50381126	28	2.0	28	96	0	103	25	3	19	51	1.62
50382647--50382794	12	11.8	12	68	13	66	25	8	13	52	1.69
50382713--50382754	18	2.3	18	80	8	50	26	7	11	54	1.62
50382962--50383066	34	3.2	34	64	24	89	25	17	12	44	1.83
50382952--50383054	30	3.2	32	65	24	90	27	14	13	44	1.83
50382936--50383327	64	6.2	64	89	1	497	26	12	14	47	1.79
50383615--50383656	15	2.8	15	88	0	66	19	7	35	38	1.79
50385301--50385478	43	4.2	43	89	2	256	27	8	20	43	1.80
50385301--50385476	83	2.1	84	87	4	248	27	8	19	44	1.80
50385457--50385517	28	2.2	28	82	2	70	24	8	14	52	1.69
50386195--50386248	21	2.6	21	91	5	83	27	42	7	22	1.80
50386503--50386555	26	2.0	26	96	0	97	28	28	3	39	1.74
50386671--50386809	59	2.4	59	92	0	224	31	18	12	36	1.89
50397070--50397110	21	2.0	21	85	0	55	24	21	2	51	1.60
50411233--50411326	46	2.0	48	87	4	138	28	14	22	34	1.94
50411305--50411438	49	2.8	49	85	5	139	29	11	26	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50411333--50411494	42	3.7	42	75	11	153	29	10	26	33	1.90
50411332--50411438	49	2.2	49	93	1	178	28	10	27	33	1.89
50411394--50411506	42	2.7	42	79	2	138	29	12	27	30	1.93
50413692--50413817	46	2.7	47	90	2	177	23	24	12	39	1.89
50415950--50415978	14	2.0	15	93	6	51	75	0	0	24	0.80
50415978--50416014	20	1.9	20	88	5	58	51	8	0	40	1.32
50426604--50426650	23	2.0	23	100	0	94	46	17	8	27	1.76
50428296--50428329	16	2.1	16	88	0	50	50	14	17	17	1.79
50431131--50431171	21	2.0	21	90	0	64	29	21	29	19	1.98
50433041--50433074	16	2.1	16	88	0	50	50	14	17	17	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167