genome.fa.s23.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  102  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33772729--33773057	175	1.9	174	94	0	577	31	24	14	30	1.94
33773010--33773088	29	2.7	30	82	13	110	30	30	13	25	1.94
33789123--33789160	19	2.0	19	85	10	51	68	0	10	21	1.19
33800266--33800471	111	1.9	111	85	6	292	40	13	21	24	1.89
33800245--33800511	28	9.6	28	81	2	223	38	14	20	25	1.91
33805028--33805104	24	3.2	24	77	0	91	38	5	36	19	1.74
33812933--33813029	24	4.0	24	93	1	167	37	5	37	20	1.75
33831930--33832042	40	2.8	40	85	6	149	35	29	13	22	1.92
33837712--33837791	39	2.1	39	95	0	142	23	27	23	25	2.00
33842267--33842474	54	3.9	54	79	9	217	23	22	17	37	1.94
33842453--33842574	47	2.6	47	97	0	226	25	24	13	36	1.93
33848953--33849146	55	3.6	54	80	4	212	22	23	18	36	1.95
33848953--33849152	109	1.8	108	83	3	267	22	23	17	36	1.95
33849125--33849245	47	2.6	47	92	2	199	25	23	13	37	1.91
33849109--33849378	47	5.8	45	78	10	143	23	25	17	33	1.96
33854271--33854317	19	2.6	18	87	9	69	27	17	8	46	1.76
33855921--33855984	32	2.0	32	100	0	128	43	21	21	12	1.86
33869747--33869808	17	3.4	17	69	26	54	27	1	24	46	1.62
33869717--33869935	39	5.6	39	90	0	312	31	4	18	45	1.68
33869910--33869962	16	3.3	15	92	5	70	39	5	15	39	1.70
33869909--33869951	16	2.7	16	100	0	86	37	6	11	44	1.68
33870729--33870865	68	2.0	68	94	0	238	31	10	16	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33888158--33888381	40	5.6	40	91	1	308	24	20	28	26	1.99
33888119--33888381	80	3.3	80	85	3	318	23	20	28	26	1.99
33888119--33888381	120	2.2	120	82	4	318	23	20	28	26	1.99
33907405--33907444	21	1.9	21	84	0	53	60	7	5	27	1.45
33907706--33907773	29	2.3	29	82	5	82	39	13	11	35	1.81
33914217--33914306	42	2.1	42	93	0	153	21	31	28	18	1.97
33927825--33927870	24	2.0	23	86	4	65	13	21	26	39	1.90
33929868--33929910	19	2.2	19	87	4	59	25	4	11	58	1.52
33932567--33932617	24	2.1	25	82	10	61	1	35	15	47	1.57
33933875--33933899	13	1.9	13	100	0	50	88	0	0	12	0.53
33937830--33937927	40	2.5	40	78	5	108	32	28	13	25	1.93
33938134--33938175	19	2.2	19	86	4	57	47	16	0	35	1.47
33955768--33955885	52	2.2	53	82	5	132	25	15	16	42	1.88
33955768--33955860	27	3.5	26	83	2	107	24	16	17	41	1.89
33955877--33956003	27	4.7	27	80	3	132	33	16	18	31	1.93
33955877--33956003	53	2.4	53	81	5	148	33	16	18	31	1.93
33974245--33974348	49	2.1	49	94	0	181	43	7	19	29	1.79
33978770--33978796	14	1.9	14	100	0	54	33	29	7	29	1.85
33979094--33979128	19	1.9	18	88	11	54	17	22	0	60	1.37
33979877--33979910	9	3.8	9	92	7	52	32	11	8	47	1.71
33980074--33980100	7	3.9	7	100	0	54	29	11	29	29	1.91
33981107--33981142	6	5.8	6	90	3	54	55	0	27	16	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33983902--33983941	20	2.0	20	95	0	71	27	12	25	35	1.92
34005314--34005353	21	1.9	21	84	0	53	60	7	5	27	1.45
34005615--34005682	29	2.3	29	82	5	82	39	13	11	35	1.81
34012126--34012215	42	2.1	42	93	0	153	21	31	28	18	1.97
34025734--34025779	24	2.0	23	86	4	65	13	21	26	39	1.90
34027777--34027819	19	2.2	19	87	4	59	25	4	11	58	1.52
34030476--34030526	24	2.1	25	82	10	61	1	35	15	47	1.57
34031784--34031808	13	1.9	13	100	0	50	88	0	0	12	0.53
34035739--34035836	40	2.5	40	78	5	108	32	28	13	25	1.93
34036043--34036084	19	2.2	19	86	4	57	47	16	0	35	1.47
34053677--34053794	52	2.2	53	82	5	132	25	15	16	42	1.88
34053677--34053769	27	3.5	26	83	2	107	24	16	17	41	1.89
34053786--34053912	27	4.7	27	80	3	132	33	16	18	31	1.93
34053786--34053912	53	2.4	53	81	5	148	33	16	18	31	1.93
34074844--34074924	33	2.5	33	87	0	117	29	25	18	25	1.98
34077554--34077631	39	2.0	39	94	0	138	41	23	15	20	1.90
34085547--34085682	43	3.2	43	78	15	138	34	25	16	24	1.95
34089473--34089747	35	7.9	35	80	6	288	30	15	22	32	1.95
34089469--34089747	105	2.7	105	89	0	441	30	15	22	31	1.94
34091074--34091299	68	3.3	67	98	0	398	32	14	29	23	1.94
34091108--34091373	68	3.9	67	89	5	192	33	15	28	21	1.94
34095287--34095502	49	4.6	49	76	15	179	25	19	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34102219--34102393	46	3.8	46	76	13	178	31	27	19	21	1.97
34103660--34103735	6	12.3	6	71	20	59	48	15	17	18	1.81
34103669--34103735	25	2.7	25	88	0	98	49	14	17	17	1.80
34104258--34104502	27	9.1	27	87	0	303	39	8	22	29	1.83
34104482--34104760	27	10.3	27	81	4	251	31	8	20	39	1.82
34104258--34104502	81	3.0	81	90	0	384	39	8	22	29	1.83
34104236--34104519	54	5.4	52	79	9	242	38	7	22	31	1.82
34106710--34106785	6	12.3	6	71	20	59	48	15	17	18	1.81
34106719--34106785	25	2.7	25	88	0	98	49	14	17	17	1.80
34106903--34106962	27	2.3	26	85	2	75	35	20	23	21	1.96
34107289--34107586	27	11.1	27	87	0	375	40	8	21	28	1.82
34107289--34107586	81	3.7	81	88	1	422	40	8	21	28	1.82
34107567--34107844	27	10.3	27	84	0	268	31	8	20	39	1.84
34110468--34110525	15	3.9	15	75	4	55	65	13	6	13	1.45
34110488--34110532	14	3.1	14	87	3	54	64	15	8	11	1.49
34110480--34110545	15	4.5	14	74	14	53	60	16	12	10	1.58
34113489--34114343	46	18.6	46	97	0	1615	28	28	19	23	1.98
34119134--34119230	48	2.0	47	98	2	185	28	14	34	22	1.94
34119505--34119585	6	15.0	5	74	18	58	76	2	4	16	1.06
34127035--34127201	49	3.6	46	80	9	178	23	20	29	26	1.99
34126997--34127201	93	2.2	97	83	10	264	24	20	28	26	1.99
34126998--34127156	49	3.4	49	77	12	172	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34131605--34131645	21	2.0	21	85	0	55	70	0	29	0	0.87
34131619--34131728	50	2.2	51	88	6	172	64	3	23	8	1.37
34131633--34131740	50	2.2	50	96	1	200	62	3	25	8	1.41
34139455--34139499	24	1.9	23	86	4	63	35	0	0	64	0.94
34139474--34139503	14	2.1	14	93	0	51	46	0	0	53	1.00
34151457--34151771	46	6.8	46	93	0	488	39	14	25	20	1.90
34151860--34151954	26	3.6	26	75	13	70	38	4	20	36	1.72
34154801--34154829	12	2.5	12	94	5	51	58	0	0	41	0.98
34156775--34156861	43	2.0	43	100	0	174	37	16	13	32	1.88
34159541--34159574	15	2.3	15	94	0	59	35	5	5	52	1.50
34160660--34160710	23	2.2	23	100	0	102	25	19	3	50	1.64
34160716--34160748	17	1.9	17	88	11	50	30	21	0	48	1.50
34161927--34161964	10	3.8	10	83	13	51	68	2	7	21	1.28
34164551--34164585	18	1.9	18	100	0	70	31	45	5	17	1.71
34167103--34167176	23	3.2	23	90	0	112	18	13	22	44	1.85
34167250--34167304	27	2.0	27	96	0	101	29	1	18	50	1.57
34171112--34171359	81	3.1	82	81	2	268	11	37	20	29	1.88
34171082--34171365	27	10.5	27	86	1	237	11	39	19	29	1.87
34178367--34178687	146	2.2	148	87	6	476	42	4	9	42	1.57
34182137--34182182	20	2.3	21	82	17	62	32	0	10	56	1.34
34182132--34182188	19	3.1	19	85	12	66	33	0	8	57	1.29
34183900--34184034	60	2.2	60	84	8	168	27	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34184682--34184706	8	3.1	8	100	0	50	0	24	24	52	1.48
34186312--34186365	27	2.0	27	89	7	83	55	11	0	33	1.35
34186716--34186758	13	3.5	13	81	18	65	48	16	0	34	1.46
34186714--34186760	23	2.0	23	100	0	94	46	17	0	36	1.48
34186718--34186767	23	2.2	23	92	0	82	52	14	0	34	1.42
34189068--34189129	27	2.3	27	94	2	106	38	9	12	38	1.77
34189545--34189597	27	2.0	27	92	0	88	28	13	32	26	1.93
34191558--34191832	48	5.7	48	78	1	264	27	20	29	23	1.99
34191558--34191831	96	2.9	95	82	3	300	27	20	28	23	1.99
34191548--34191832	144	2.0	144	82	2	349	27	19	29	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167