genome.fa.s23.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  57  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17792775--17792982	40	5.2	40	87	4	271	26	27	22	23	2.00
17797891--17798006	27	4.3	27	87	2	153	42	18	18	20	1.90
17797891--17798006	54	2.1	54	88	0	169	42	18	18	20	1.90
17798010--17798124	27	4.3	27	83	5	126	23	15	19	41	1.89
17798459--17798508	18	2.8	18	84	6	66	26	20	10	44	1.82
17802671--17802710	18	2.2	19	86	8	57	15	27	40	17	1.89
17802911--17803025	27	4.3	27	77	7	101	37	20	10	32	1.86
17803005--17803095	27	3.4	27	84	0	119	36	16	21	25	1.94
17803005--17803107	27	3.8	26	77	12	93	33	18	21	26	1.96
17805094--17805302	53	3.9	54	74	4	170	23	22	15	38	1.93
17805141--17805293	55	2.8	54	75	14	145	24	21	15	38	1.92
17805084--17805301	54	4.0	54	75	4	170	22	22	15	40	1.91
17805615--17805662	15	3.1	14	77	13	51	54	10	6	29	1.59
17808828--17808860	15	2.1	16	94	5	59	51	6	12	30	1.63
17811399--17811604	53	3.8	53	77	5	180	22	23	16	36	1.94
17811405--17811604	55	3.7	53	78	5	177	23	24	17	35	1.96
17811405--17811618	54	4.0	54	80	4	198	23	23	16	35	1.94
17811591--17811712	47	2.6	47	90	0	190	25	23	12	38	1.90
17815832--17815874	16	2.7	16	79	13	52	51	13	18	16	1.77
17816082--17816171	29	3.1	29	85	7	114	27	14	31	26	1.95
17816182--17816228	24	2.0	24	100	0	94	14	12	38	34	1.85
17820098--17820222	29	4.3	29	77	1	135	28	13	31	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17826751--17826825	30	2.5	30	78	6	82	22	21	9	46	1.79
17826708--17827044	89	3.8	89	81	4	358	21	23	15	40	1.90
17826857--17827000	29	4.9	28	74	14	130	18	25	15	40	1.89
17832127--17832686	138	4.1	138	85	3	743	43	6	9	40	1.63
17836631--17837012	100	3.8	100	98	0	728	24	19	24	31	1.98
17840283--17840428	27	5.4	27	82	4	170	33	19	23	23	1.97
17840284--17840428	54	2.7	54	86	2	202	33	19	22	24	1.97
17847854--17848000	27	5.4	27	85	0	195	37	19	19	24	1.94
17847855--17848000	54	2.7	54	90	2	222	37	19	18	24	1.94
17853111--17853223	60	1.9	59	100	0	217	30	14	15	39	1.86
17854356--17854464	37	3.0	36	91	2	173	25	30	21	22	1.99
17854669--17854853	47	3.9	47	89	0	280	27	27	11	33	1.92
17861576--17861613	7	5.4	7	100	0	76	28	0	0	71	0.87
17861962--17862037	23	3.3	22	78	10	80	17	3	5	73	1.17
17873787--17874655	44	19.8	44	85	2	1120	30	15	26	27	1.96
17876235--17876265	7	4.4	7	100	0	62	29	0	0	70	0.87
17876611--17876686	23	3.3	22	75	10	71	17	5	5	72	1.22
17887052--17888357	44	29.7	44	87	0	1806	29	15	27	27	1.96
17889704--17889782	12	6.4	12	71	10	52	30	6	0	63	1.19
17900496--17900608	60	1.9	60	92	3	192	37	15	24	23	1.93
17902978--17903841	44	19.6	44	85	1	1113	29	14	27	28	1.95
17905440--17905482	19	2.3	19	87	0	59	27	4	0	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17905484--17905516	17	1.9	17	93	0	57	36	6	0	57	1.23
17908862--17908940	38	2.1	38	92	0	131	43	8	32	15	1.77
17917514--17918729	44	27.6	44	83	3	1290	31	13	25	29	1.94
17917518--17918729	88	13.8	88	90	0	1559	31	13	25	29	1.94
17919541--17920206	87	7.7	87	100	0	1332	37	12	18	31	1.88
17924362--17924449	3	29.3	3	72	22	62	65	0	1	32	1.00
17924364--17924450	7	12.3	7	75	16	81	66	0	1	32	0.99
17924377--17924523	57	2.7	55	77	13	135	63	1	3	31	1.19
17926068--17927522	44	33.4	44	89	2	1979	27	28	13	30	1.94
17939563--17939650	3	29.3	3	72	22	62	65	0	1	32	1.00
17939565--17939651	7	12.3	7	75	16	81	66	0	1	32	0.99
17939578--17939724	57	2.7	55	77	13	135	63	1	3	31	1.19
17949801--17949839	20	2.1	19	85	9	53	53	15	25	5	1.62
17951594--17951664	35	2.0	35	100	0	142	39	16	19	23	1.92
17960021--17960096	38	2.0	38	100	0	152	26	5	23	44	1.74
17967651--17967701	24	2.0	27	81	11	63	23	7	21	47	1.77
17978120--17978293	45	3.9	45	76	1	161	21	24	14	40	1.90
17983154--17983289	68	2.0	68	100	0	272	45	20	4	29	1.70
17987069--17987094	11	2.4	11	100	0	52	65	7	0	26	1.20
17990466--17990730	40	6.7	40	90	2	374	23	22	26	26	2.00
17994716--17994887	93	1.8	93	92	2	292	27	27	21	23	1.99
17994708--17994879	46	3.7	46	75	14	174	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18000341--18000407	24	2.8	24	84	4	82	23	13	29	32	1.93
18015255--18015282	13	2.2	13	100	0	56	50	7	7	35	1.57
18023548--18023598	20	2.5	20	93	0	84	33	11	21	33	1.90
18023643--18023748	24	4.4	24	91	3	160	29	21	21	27	1.99
18023643--18023748	48	2.2	48	93	3	178	29	21	21	27	1.99
18023955--18024018	31	2.1	31	87	0	92	37	14	23	25	1.92
18025974--18026993	47	21.6	47	98	0	1896	29	29	8	32	1.86
18035651--18035698	25	2.0	24	87	4	69	33	25	16	25	1.96
18035735--18036565	20	41.5	20	94	0	1473	35	12	20	32	1.90
18035735--18036565	40	20.8	40	99	0	1653	35	12	20	32	1.90
18036612--18036731	23	5.1	23	88	4	186	28	21	20	29	1.98
18036612--18036732	24	5.1	23	88	3	170	28	21	20	28	1.98
18036612--18036731	47	2.6	47	94	0	204	28	21	20	29	1.98
18036945--18037008	31	2.1	31	87	0	92	35	14	23	26	1.93
18038135--18038183	10	4.8	10	83	11	55	32	0	4	63	1.13
18042012--18042060	10	4.9	10	82	9	64	20	10	2	67	1.30
18049364--18049423	30	2.0	30	83	6	77	36	3	26	33	1.73
18050065--18050159	49	1.9	49	91	0	154	27	17	27	27	1.98
18052907--18052945	15	2.5	15	91	4	60	15	12	15	56	1.68
18055009--18055065	30	1.9	30	85	7	80	35	7	24	33	1.82
18055708--18055953	49	4.9	50	84	2	316	25	17	27	28	1.98
18055813--18055896	28	3.2	28	65	25	83	23	16	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18055711--18055953	100	2.4	98	86	2	324	25	18	27	29	1.98
18059682--18059761	41	2.0	40	82	2	97	22	17	27	32	1.96
18067541--18067584	19	2.4	19	85	7	56	50	0	9	40	1.34
18068701--18069084	189	2.0	189	98	0	750	35	14	18	30	1.91
18070899--18071065	41	4.1	39	81	10	165	20	18	23	36	1.95
18070908--18071075	82	2.0	83	80	7	191	19	18	24	37	1.94
18075009--18075083	5	14.8	5	73	15	57	24	1	0	74	0.89
18075010--18075082	4	16.8	4	75	20	51	24	1	0	73	0.90
18075009--18075081	22	3.3	22	79	11	87	24	1	0	73	0.90
18075500--18075607	26	4.2	26	93	0	189	32	7	24	36	1.83
18080347--18080479	55	2.4	55	93	0	221	36	24	12	26	1.92
18082370--18082441	35	2.1	35	100	0	144	37	13	19	29	1.90
18094488--18094515	9	3.1	9	100	0	56	67	21	0	10	1.20
18103024--18103118	40	2.4	40	77	8	95	32	13	24	29	1.93
18108629--18108741	27	4.1	27	79	6	104	38	21	22	18	1.94
18111884--18112067	40	4.6	40	83	5	237	25	22	26	25	2.00
18111884--18112098	80	2.7	79	83	6	258	24	22	26	26	2.00
18119972--18120016	20	2.1	22	84	12	58	26	6	22	44	1.77
18120013--18120276	40	6.6	40	81	6	302	25	23	25	25	2.00
18120013--18120312	80	3.8	80	89	2	401	25	23	26	25	2.00
18120008--18120276	120	2.2	120	88	1	387	25	23	26	25	2.00
18122095--18122119	9	2.8	9	100	0	50	60	28	0	12	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18122820--18123011	99	1.9	101	85	4	264	28	14	24	32	1.94
18123617--18123675	10	5.9	10	86	7	75	22	10	1	66	1.31
18125538--18125569	14	2.4	14	90	10	50	21	9	28	40	1.84
18125581--18125969	151	2.6	151	88	3	568	29	17	22	30	1.97
18125737--18125918	101	1.8	101	85	2	258	29	19	21	29	1.97
18125582--18125968	50	7.7	50	77	4	375	29	17	22	29	1.97
18126546--18126893	180	1.9	180	83	2	448	37	8	19	35	1.81
18127625--18127692	29	2.3	29	92	0	109	47	7	25	20	1.76
18131265--18131495	48	4.8	48	81	3	250	25	29	19	25	1.98
18144650--18144784	48	2.8	47	85	3	162	24	30	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167