genome.fa.s23.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  91  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30136763--30137118	140	2.5	140	90	0	543	27	21	21	30	1.98
30137028--30137231	109	1.9	109	83	0	264	26	19	20	33	1.96
30136888--30137355	249	1.9	249	84	0	632	26	19	21	31	1.97
30140247--30140473	40	5.7	40	89	0	337	17	21	29	32	1.96
30143792--30143852	30	2.0	30	96	0	113	26	4	24	44	1.74
30148964--30149148	92	2.0	93	95	1	336	63	4	17	14	1.46
30159004--30159207	53	3.8	53	76	7	169	37	17	23	22	1.94
30163176--30163353	27	6.6	27	84	3	205	29	28	15	26	1.96
30163197--30163352	82	1.9	81	88	3	233	29	28	15	26	1.96
30172528--30172705	27	6.6	27	84	3	205	29	28	15	26	1.96
30172549--30172704	82	1.9	81	88	3	233	29	28	15	26	1.96
30182099--30182218	43	2.8	42	74	8	109	39	25	14	21	1.91
30184977--30185095	46	2.6	44	89	6	168	27	20	27	24	1.99
30195282--30195349	34	2.0	34	85	5	93	30	22	23	23	1.99
30197404--30197495	48	1.9	48	88	0	139	25	20	26	28	1.99
30198531--30198612	42	2.0	42	85	9	114	17	28	31	23	1.96
30214026--30214152	43	3.0	41	82	4	148	30	27	13	28	1.94
30224081--30224194	43	2.7	43	83	0	147	27	28	16	28	1.97
30225624--30225730	27	3.9	27	84	9	137	36	21	24	17	1.95
30225621--30225730	54	2.0	54	87	3	159	37	20	24	17	1.94
30233323--30233429	27	3.9	27	82	9	119	38	22	21	17	1.93
30233322--30233428	54	2.0	54	85	3	144	39	22	20	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30239313--30239350	17	2.2	18	95	4	69	10	26	50	13	1.73
30244301--30244406	40	2.7	38	88	7	142	23	24	27	24	2.00
30244333--30244639	151	2.0	151	96	0	578	29	18	24	28	1.98
30245929--30246180	40	6.3	40	89	1	303	28	26	19	24	1.99
30256089--30256140	25	2.1	25	100	0	104	30	21	3	44	1.70
30256849--30256929	41	2.0	41	92	0	135	43	13	20	22	1.87
30262494--30262838	173	2.0	173	96	0	636	30	20	24	25	1.99
30266507--30266675	46	3.7	45	72	16	157	31	28	19	20	1.97
30266743--30266807	33	2.0	32	96	0	112	21	29	18	29	1.96
30269922--30270087	43	3.9	43	77	7	151	31	24	15	28	1.95
30271389--30271472	43	2.0	43	83	9	109	29	20	26	23	1.99
30277763--30277847	43	2.0	43	82	13	104	25	17	28	28	1.98
30286224--30286292	26	2.7	24	78	14	66	75	0	4	20	0.97
30286234--30286303	21	3.3	22	82	11	76	74	0	5	20	1.02
30286224--30286304	31	2.5	32	80	9	85	75	0	4	19	0.98
30286224--30286303	5	15.8	5	74	19	69	75	0	5	20	0.99
30291649--30291681	13	2.6	13	90	4	50	48	12	0	39	1.40
30292878--30292956	39	2.0	39	92	0	131	31	2	21	44	1.66
30297303--30297567	137	1.9	138	82	5	331	33	22	20	23	1.97
30298123--30298147	13	1.9	13	100	0	50	52	16	0	32	1.44
30311395--30311562	40	4.2	40	79	1	140	25	27	23	23	2.00
30311447--30311561	40	2.8	39	84	6	149	26	26	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30314830--30314875	24	2.0	23	82	4	56	41	10	19	28	1.85
30315221--30315345	64	2.0	64	93	0	214	33	17	25	23	1.96
30320356--30320640	141	2.0	141	97	0	543	41	12	17	28	1.86
30327565--30327620	17	3.5	17	71	14	64	19	28	37	14	1.91
30328567--30328642	40	1.9	40	94	0	134	48	14	9	27	1.74
30328882--30328948	33	2.0	33	100	0	134	26	2	26	43	1.69
30340672--30340711	11	3.7	11	90	3	64	37	17	35	10	1.83
30349364--30349426	29	2.3	27	88	5	90	61	4	17	15	1.50
30354417--30354594	27	6.6	27	83	6	198	26	15	28	29	1.96
30354414--30354594	82	2.2	81	82	4	222	27	16	27	29	1.97
30356948--30356977	16	1.9	16	93	6	53	33	23	0	43	1.54
30357174--30357415	50	4.8	50	75	9	215	30	25	17	26	1.98
30357387--30357444	28	2.1	28	93	0	98	27	24	20	27	1.99
30357387--30357430	14	3.0	16	78	21	60	25	25	22	27	2.00
30365421--30366437	49	21.1	49	96	1	1796	32	8	29	29	1.87
30366556--30366634	37	2.1	37	88	4	115	25	18	30	25	1.98
30383467--30383586	59	2.0	59	91	0	195	30	32	15	20	1.94
30384871--30384904	13	2.6	13	85	0	50	35	17	2	44	1.64
30390651--30390693	21	2.2	20	84	12	54	41	16	6	34	1.75
30392477--30392588	43	2.6	43	88	0	179	10	25	32	32	1.90
30397115--30397316	38	5.3	38	86	2	278	21	21	25	30	1.98
30397115--30397316	78	2.6	76	85	3	287	21	21	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30397309--30397420	43	2.6	43	91	0	197	8	25	33	32	1.87
30397288--30397420	43	3.1	43	86	2	180	10	24	33	31	1.89
30399308--30399480	43	4.0	43	69	8	127	32	24	17	26	1.97
30413445--30413551	44	2.5	42	80	8	126	29	12	26	31	1.92
30413479--30413562	42	2.0	42	88	0	123	28	11	25	34	1.91
30416727--30416771	23	2.0	22	91	4	72	53	35	2	8	1.45
30421541--30421621	40	2.0	41	95	2	146	20	11	22	45	1.82
30426156--30426389	40	5.9	40	92	0	371	26	22	27	23	1.99
30426156--30426416	120	2.2	119	86	4	364	27	23	27	22	1.99
30434095--30434133	18	2.0	20	85	9	55	23	5	23	48	1.70
30434142--30434375	40	5.9	40	91	0	371	26	23	27	23	2.00
30434142--30434402	120	2.2	119	86	5	366	26	23	26	22	2.00
30441713--30441795	23	3.7	22	83	4	103	22	21	15	39	1.91
30441726--30441809	22	3.8	22	82	6	89	25	21	20	33	1.97
30448527--30448559	17	1.9	17	100	0	66	54	12	9	24	1.66
30454549--30454599	21	2.4	21	83	6	59	31	3	17	47	1.66
30455100--30455182	44	2.0	42	84	13	109	32	13	22	31	1.92
30457535--30457677	37	3.9	37	94	0	241	25	32	18	23	1.97
30457812--30458013	48	4.2	48	87	0	287	31	25	7	35	1.85
30461939--30462154	40	5.4	40	92	2	314	25	27	22	24	2.00
30464611--30464775	58	2.9	58	88	0	242	30	28	17	23	1.97
30464614--30464772	29	5.5	29	70	12	96	30	27	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30464929--30465010	43	1.9	43	92	0	137	30	31	23	14	1.94
30465956--30466593	47	13.6	47	96	0	1114	29	28	8	33	1.87
30469094--30469234	43	3.3	43	92	0	237	32	31	21	13	1.92
30472027--30472576	47	11.6	47	89	3	793	28	29	9	33	1.88
30472027--30472576	96	5.8	96	92	3	814	28	29	9	33	1.88
30474031--30474878	56	15.1	56	99	0	1678	23	21	8	46	1.79
30475939--30476140	48	4.2	48	88	0	296	31	24	6	37	1.82
30478868--30478978	54	2.1	54	80	0	123	20	28	9	40	1.85
30484364--30484423	31	1.9	31	83	6	77	48	11	1	38	1.50
30485760--30485808	22	2.2	22	96	0	89	16	32	32	18	1.93
30488592--30488727	26	5.2	26	95	0	236	34	6	23	35	1.81
30490191--30490242	26	2.0	26	84	0	68	32	19	15	32	1.93
30490346--30490466	27	4.4	27	88	1	170	18	25	23	33	1.97
30490346--30490485	54	2.6	55	87	2	185	18	25	22	34	1.96
30490346--30490485	27	5.2	28	86	7	157	18	25	22	34	1.96
30499251--30499295	23	2.0	23	82	8	56	51	13	4	31	1.61
30507165--30507206	20	2.1	20	90	0	66	33	28	21	16	1.95
30517326--30517496	40	4.3	40	89	3	220	23	21	26	28	1.99
30525618--30525744	44	3.0	43	79	3	157	23	17	28	30	1.97
30527576--30527721	27	5.4	27	86	3	177	39	18	8	32	1.82
30527576--30527746	54	3.2	53	80	6	175	38	19	9	32	1.85
30527585--30527744	81	2.0	81	81	2	187	37	18	10	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30527764--30527873	27	4.1	27	81	4	123	38	17	17	27	1.92
30527777--30527891	54	2.1	54	82	3	133	32	21	18	27	1.97
30528532--30528583	27	2.0	26	84	3	68	17	26	21	34	1.95
30528622--30528680	27	2.2	26	84	3	73	22	23	18	35	1.96
30535474--30535643	27	6.3	27	84	2	171	40	19	8	31	1.82
30535664--30535771	27	4.0	27	83	4	128	36	15	18	29	1.92
30535662--30535797	54	2.5	54	81	0	155	34	17	19	27	1.95
30536519--30536578	27	2.3	27	82	2	68	21	23	18	36	1.95
30547410--30547465	28	2.0	29	89	3	87	14	21	44	19	1.86
30549373--30549436	32	2.0	32	96	0	119	32	20	21	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167