genome.fa.s23.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  135  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45183455--45183626	87	2.0	87	96	2	321	46	11	15	26	1.80
45184042--45184081	21	2.0	19	85	9	53	35	2	2	60	1.24
45184612--45184651	19	2.2	20	78	17	50	35	0	0	65	0.93
45185762--45185843	42	1.9	44	85	7	116	57	4	23	14	1.57
45186959--45186993	15	2.3	15	100	0	70	22	22	37	17	1.94
45187089--45187145	27	2.1	27	87	6	80	10	10	40	38	1.74
45187160--45187217	27	2.1	27	80	0	62	17	13	36	32	1.89
45187179--45187239	27	2.3	27	88	0	86	14	18	36	31	1.91
45195497--45195540	20	2.2	20	83	0	52	15	2	18	63	1.41
45201696--45201851	52	3.0	52	77	10	174	26	16	26	30	1.97
45203951--45204066	58	2.0	57	93	1	196	43	17	20	18	1.88
45207615--45207656	20	2.1	20	100	0	84	35	4	23	35	1.76
45208351--45208469	63	1.9	63	94	0	211	46	9	16	27	1.78
45208692--45208891	52	3.9	52	78	10	182	26	18	26	29	1.98
45208811--45208901	46	2.0	46	82	4	112	25	16	27	30	1.97
45220980--45221186	107	2.0	105	85	1	279	26	11	15	46	1.80
45221410--45221469	31	2.0	30	87	9	86	18	15	11	55	1.70
45221828--45221913	22	4.2	19	73	16	73	59	8	3	29	1.43
45221828--45221913	21	4.2	21	73	12	63	59	8	3	29	1.43
45224339--45224479	40	3.6	40	88	1	196	19	27	24	28	1.98
45238355--45238439	43	2.0	42	97	0	152	25	14	22	36	1.92
45242314--45242445	48	2.7	50	85	4	162	25	31	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45242309--45242627	48	6.8	45	70	17	147	23	29	20	27	1.98
45249097--45249201	50	2.1	50	100	0	210	48	14	13	23	1.79
45249455--45249493	20	1.9	21	84	5	53	15	2	7	74	1.15
45253501--45253530	14	2.1	14	93	0	51	46	36	0	16	1.47
45274376--45274403	11	2.5	11	100	0	56	82	0	0	17	0.68
45280041--45280084	10	4.5	10	80	5	54	81	0	0	18	0.68
45282094--45282132	12	3.2	12	85	10	53	71	0	25	2	0.98
45282089--45282132	22	1.9	22	90	9	70	72	0	25	2	0.96
45293759--45293807	20	2.7	18	77	22	57	51	4	2	42	1.32
45293792--45293861	32	2.3	30	83	11	88	54	2	2	40	1.30
45295862--45295937	26	2.9	27	82	4	100	19	28	15	35	1.93
45301350--45301394	23	2.0	23	82	8	56	37	22	11	28	1.88
45307246--45307294	21	2.3	21	75	0	53	40	6	0	53	1.26
45307499--45307538	20	2.0	20	95	0	71	50	7	5	37	1.53
45309861--45310095	30	7.1	30	62	27	77	54	4	7	34	1.47
45309824--45310099	67	4.1	67	99	0	536	53	4	7	34	1.48
45309898--45310074	37	5.2	37	62	27	120	53	5	7	34	1.51
45310395--45310452	22	2.7	21	76	10	53	43	17	3	36	1.66
45310431--45310521	19	4.9	19	84	8	125	39	16	9	34	1.82
45310443--45310511	35	1.9	36	91	2	113	40	15	10	33	1.81
45314615--45314679	32	2.0	34	84	6	89	32	24	16	26	1.96
45315301--45315441	75	1.9	75	93	0	246	30	19	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45315637--45316040	202	2.0	202	95	0	718	32	20	10	36	1.87
45316779--45316882	26	4.0	26	91	0	163	36	23	6	33	1.81
45323206--45323453	82	3.0	82	97	0	460	37	7	10	44	1.67
45328283--45328318	18	2.0	18	100	0	72	33	22	0	44	1.53
45330248--45330318	35	2.0	35	97	0	133	26	14	12	46	1.80
45332678--45332841	43	3.8	44	74	14	144	20	20	27	32	1.97
45334911--45335077	40	4.2	40	85	5	207	25	25	22	26	2.00
45341018--45341087	30	2.3	30	90	4	106	18	34	25	21	1.96
45341029--45341088	30	2.0	30	96	0	111	15	33	28	23	1.94
45341897--45342017	21	5.9	21	80	1	129	45	16	22	15	1.85
45341902--45342027	63	2.0	61	83	6	155	46	15	22	15	1.83
45343133--45343270	44	3.1	44	61	25	101	38	13	7	40	1.73
45343123--45343299	88	2.0	88	100	0	354	36	14	9	40	1.78
45345639--45345849	55	3.9	54	81	9	241	35	16	24	23	1.95
45345648--45345848	108	1.8	110	85	6	284	34	15	24	24	1.95
45356855--45357089	55	4.4	53	78	7	228	35	16	24	23	1.95
45356863--45357065	108	1.9	110	87	2	302	33	16	24	25	1.96
45357181--45357227	24	1.9	25	86	4	69	44	10	23	21	1.83
45357416--45357518	51	2.0	51	98	0	197	22	21	10	45	1.82
45363216--45363492	51	5.5	51	78	16	344	26	19	23	29	1.98
45363165--45363544	100	3.8	100	97	0	697	25	18	24	30	1.98
45365444--45365657	104	2.1	104	99	0	419	43	9	19	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45373521--45373621	33	3.0	33	82	4	105	29	22	17	29	1.97
45373635--45373679	21	2.1	21	84	8	56	35	53	6	4	1.47
45375701--45375760	22	2.6	25	82	10	65	20	5	5	70	1.26
45379936--45380095	26	6.2	26	93	0	275	33	7	23	35	1.83
45397919--45397973	19	2.8	19	77	2	56	34	27	14	23	1.94
45400260--45400284	12	2.1	12	100	0	50	24	16	24	36	1.94
45408043--45408130	40	2.2	40	89	2	142	32	31	20	14	1.93
45408136--45408334	101	2.0	101	100	0	398	36	24	7	31	1.82
45413588--45413669	40	2.0	40	95	0	146	31	9	31	26	1.89
45414368--45414399	16	2.0	16	100	0	64	50	31	6	12	1.65
45415682--45415716	16	2.2	16	89	0	52	54	20	20	5	1.64
45415932--45416041	29	3.9	29	81	2	125	27	16	28	28	1.97
45420457--45420570	29	4.0	29	83	6	135	26	14	29	28	1.95
45420469--45420579	57	1.9	58	87	1	161	26	15	30	27	1.96
45422370--45422423	19	2.9	18	79	17	58	18	42	25	12	1.86
45433607--45434075	40	11.7	40	87	0	677	31	18	27	22	1.97
45433608--45434075	80	5.8	80	98	0	900	31	19	27	22	1.97
45435918--45436033	58	2.0	58	98	0	223	50	6	21	21	1.72
45436836--45436971	56	2.4	56	92	0	218	27	13	25	33	1.93
45436836--45437000	56	2.9	56	87	3	199	26	13	27	33	1.93
45442411--45442832	40	10.6	39	84	3	524	23	22	27	25	2.00
45442464--45442830	79	4.6	79	97	1	673	23	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45449852--45450574	47	15.4	47	92	0	1122	32	8	30	28	1.87
45449954--45450076	22	5.3	22	65	18	79	31	8	28	30	1.88
45450236--45450311	22	3.3	22	64	10	62	28	10	31	28	1.90
45454510--45454574	33	2.0	33	84	0	85	29	26	20	24	1.99
45463677--45463715	19	2.1	19	85	0	51	28	2	2	66	1.18
45470001--45470054	10	5.6	9	77	16	54	83	0	12	3	0.78
45471379--45471539	89	1.8	87	89	5	252	31	17	22	27	1.97
45471207--45472026	220	3.7	220	92	0	1300	32	17	22	27	1.96
45472375--45472425	19	2.9	17	81	13	59	37	9	17	35	1.83
45472385--45472427	19	2.1	21	91	8	72	37	9	18	34	1.83
45475022--45475110	28	3.2	28	83	0	115	33	16	30	19	1.94
45475022--45475122	28	3.6	28	76	11	89	33	17	29	18	1.95
45475131--45475190	28	2.1	28	87	0	84	43	15	23	18	1.87
45482385--45482425	14	2.9	14	77	0	55	36	31	9	21	1.86
45487625--45487659	4	8.8	4	87	0	52	45	22	5	25	1.74
45487785--45487863	40	2.0	40	100	0	158	35	8	20	35	1.84
45488875--45488983	49	2.2	48	77	3	110	24	19	19	36	1.94
45488891--45488987	49	2.0	49	85	0	131	24	20	19	35	1.96
45489804--45489843	19	2.0	20	90	4	64	50	0	5	45	1.23
45492167--45492331	35	4.7	35	84	1	215	31	10	24	33	1.90
45492721--45492752	5	6.6	5	92	7	57	18	0	0	81	0.70
45492721--45492751	14	2.2	14	100	0	62	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45496844--45496992	35	4.3	35	82	0	147	32	11	22	34	1.89
45508966--45509079	56	2.0	56	96	0	210	28	21	14	36	1.92
45517013--45517054	4	10.2	4	80	14	50	47	2	2	47	1.28
45518135--45518185	21	2.3	21	80	6	57	43	1	27	27	1.66
45534230--45534353	59	2.1	59	96	0	230	42	21	9	25	1.83
45534602--45534712	6	18.5	6	77	2	98	74	7	3	14	1.16
45534615--45534700	36	2.4	36	96	0	154	75	6	3	13	1.14
45534615--45534712	18	5.4	18	82	0	115	74	7	4	14	1.18
45536559--45536600	16	2.5	17	77	14	52	50	0	47	2	1.14
45536590--45536644	11	4.9	11	79	14	51	63	0	36	0	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167