genome.fa.s23.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  96  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31839674--31839711	18	2.1	19	90	5	60	34	15	0	50	1.45
31839893--31840023	43	3.1	43	83	4	167	31	26	17	24	1.97
31839901--31840037	43	3.2	43	81	6	163	29	25	16	27	1.97
31847325--31847437	46	2.4	46	81	12	133	24	29	16	29	1.97
31853389--31853446	30	1.9	30	89	0	89	37	8	27	25	1.85
31854252--31854445	50	3.9	50	82	1	210	27	17	24	29	1.97
31864822--31865837	47	21.3	47	94	2	1735	32	8	28	29	1.87
31864822--31865837	96	10.7	96	96	1	1773	32	8	28	29	1.87
31864822--31865837	143	7.1	141	94	2	1735	32	8	28	29	1.87
31865815--31865859	22	2.0	22	100	0	90	33	4	35	26	1.77
31878107--31878227	47	2.6	47	84	8	151	23	28	17	30	1.97
31882822--31882989	46	3.6	46	77	15	141	25	28	18	27	1.98
31884341--31884518	27	6.6	27	82	5	171	28	28	15	26	1.96
31884362--31884517	82	1.9	81	85	3	215	28	28	16	26	1.97
31892713--31892883	46	3.7	46	74	14	154	23	29	19	27	1.98
31895002--31895184	40	4.6	39	81	6	170	24	20	27	26	1.99
31895038--31895219	79	2.3	80	79	3	190	26	20	27	25	1.99
31902359--31902528	79	2.1	79	81	3	189	24	21	27	26	1.99
31902306--31902528	40	5.6	39	81	7	189	24	21	27	26	1.99
31902386--31902563	79	2.2	80	80	2	189	24	21	28	25	1.99
31903970--31904136	43	3.9	42	76	7	185	32	26	14	26	1.94
31908051--31908238	27	7.0	27	83	0	196	27	11	17	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31910075--31910122	17	2.8	17	78	6	53	20	16	20	41	1.90
31912603--31912672	25	2.8	24	84	4	77	31	24	20	24	1.98
31915179--31915287	25	4.4	24	82	6	103	27	22	21	29	1.99
31915195--31915286	25	3.7	25	80	4	114	26	22	23	27	2.00
31915491--31915622	54	2.4	54	87	0	183	25	20	18	35	1.95
31915490--31915623	27	5.0	27	78	1	135	24	20	19	35	1.96
31915613--31915768	27	5.8	27	81	7	158	30	7	20	41	1.80
31915612--31915821	54	3.9	54	82	6	205	30	7	20	41	1.79
31915668--31915821	27	5.7	26	84	5	182	28	5	22	43	1.76
31915643--31915821	27	6.6	27	81	5	175	29	7	20	42	1.79
31915627--31915834	27	7.7	25	79	10	139	31	6	21	41	1.78
31915652--31915821	81	2.1	81	85	6	229	30	7	20	42	1.79
31915813--31915967	27	5.7	27	90	1	204	39	6	23	30	1.80
31915703--31915981	81	3.5	80	77	3	231	34	6	21	36	1.80
31915785--31915981	54	3.6	54	79	6	193	37	6	21	34	1.79
31918794--31918872	40	2.0	40	89	0	122	30	25	10	34	1.89
31923917--31923966	6	8.2	6	84	2	64	68	4	0	28	1.08
31931873--31931983	42	2.6	41	79	8	116	31	27	18	22	1.97
31933031--31933072	21	2.0	22	86	13	61	40	16	14	28	1.88
31934467--31934638	93	1.8	93	87	2	256	26	27	21	23	1.99
31934459--31934634	46	3.8	46	72	12	162	27	27	21	23	1.99
31937038--31937093	15	3.7	15	86	9	87	60	10	16	12	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31940047--31940265	46	4.7	46	82	9	284	29	27	20	22	1.98
31941016--31941118	52	2.0	52	98	0	197	42	23	14	19	1.88
31945411--31945595	40	4.7	40	82	7	209	25	27	23	23	2.00
31945411--31945595	79	2.3	82	83	7	229	25	27	23	23	2.00
31953376--31953560	79	2.3	82	84	7	238	25	27	22	24	2.00
31953357--31953560	40	5.1	40	82	8	238	25	27	22	25	2.00
31961324--31961505	40	4.6	40	88	3	251	23	27	23	25	2.00
31969206--31969314	40	2.7	40	79	8	132	24	23	22	28	2.00
31970114--31970198	43	2.0	43	95	0	152	29	10	16	43	1.81
31971230--31971269	20	2.0	21	85	5	55	60	15	5	20	1.53
31971452--31971493	11	3.7	11	78	15	50	52	26	2	19	1.58
31971649--31971732	22	3.9	21	69	12	62	38	17	13	30	1.88
31979222--31979500	36	7.6	37	67	19	131	31	4	1	62	1.22
31979219--31979496	29	10.3	27	67	23	94	31	4	1	62	1.23
31979264--31979335	30	2.5	28	81	16	85	30	4	0	65	1.12
31979247--31979373	46	2.8	46	77	12	113	32	5	0	62	1.18
31979354--31979389	17	2.1	17	89	0	54	33	2	2	61	1.25
31979218--31979501	26	11.0	25	66	25	80	32	4	1	62	1.22
31979218--31979489	14	21.3	12	66	26	77	31	4	1	62	1.23
31993680--31993787	37	2.9	37	94	0	180	25	32	19	22	1.97
31993950--31994207	47	5.5	47	90	0	372	25	28	13	32	1.93
31993950--31994255	94	3.2	94	84	3	375	26	27	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31994178--31994866	48	13.7	48	82	8	793	32	27	5	34	1.80
31994247--31994275	14	2.1	14	100	0	58	41	31	0	27	1.56
31994199--31994332	62	2.1	62	93	1	223	34	27	4	33	1.77
31994178--31994866	110	6.8	110	87	9	779	32	27	5	34	1.80
31994261--31994866	96	6.1	96	94	2	897	32	27	5	35	1.79
31994309--31994442	62	2.1	62	90	1	205	35	28	4	32	1.77
31994357--31994385	14	2.1	14	100	0	58	41	31	0	27	1.56
32000023--32000083	30	2.0	30	83	0	77	31	22	8	37	1.84
32001138--32001222	44	1.9	44	90	0	134	30	12	24	31	1.93
32002907--32003027	36	3.2	37	78	11	122	30	4	0	64	1.18
32002904--32003003	29	3.5	27	75	20	87	31	2	1	66	1.10
32002974--32003034	19	3.3	19	82	8	74	29	4	0	65	1.13
32002932--32003058	46	2.8	46	77	12	113	32	5	0	62	1.18
32002939--32003021	30	2.8	31	77	20	88	31	3	0	65	1.10
32003039--32003074	17	2.1	17	89	0	54	33	2	2	61	1.25
32002873--32003180	14	22.0	14	65	20	121	31	4	1	62	1.25
32003098--32003180	26	3.1	25	72	18	69	33	1	2	62	1.16
32002903--32003060	12	12.8	12	68	24	64	31	5	0	62	1.21
32014267--32014292	13	2.0	13	100	0	52	30	0	7	61	1.24
32015670--32016035	40	9.2	40	93	1	612	22	22	26	27	1.99
32023755--32023845	34	2.7	33	77	11	96	26	20	24	28	1.99
32031498--32031588	34	2.7	33	76	17	89	27	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32033875--32033935	30	2.0	30	100	0	122	40	9	9	39	1.72
32036220--32036277	30	1.9	31	82	3	73	41	1	22	34	1.64
32038499--32038722	40	5.6	40	84	3	270	25	22	26	26	2.00
32038505--32038722	83	2.7	80	86	5	271	24	22	27	25	2.00
32046532--32046672	40	3.5	40	91	0	221	24	23	26	25	2.00
32063790--32064012	40	5.6	40	84	4	270	24	21	26	26	2.00
32063794--32064012	82	2.7	79	84	6	255	23	22	27	26	2.00
32068476--32068519	20	2.2	20	91	0	70	27	2	22	47	1.63
32071211--32071292	40	2.0	40	97	0	155	35	29	10	24	1.90
32075347--32075395	22	2.1	24	85	7	66	18	8	12	61	1.55
32077092--32077387	154	1.9	154	90	0	466	29	27	14	28	1.96
32078452--32078487	19	1.9	19	88	5	56	38	0	0	61	0.96
32083136--32083160	13	1.9	13	100	0	50	12	24	40	24	1.88
32111551--32111721	93	1.8	93	84	0	234	23	21	26	28	1.99
32117612--32117712	34	2.9	34	80	4	105	28	20	27	22	1.99
32119869--32119928	30	2.0	30	90	0	93	30	25	8	36	1.85
32150393--32150487	42	2.2	43	83	9	115	31	26	17	24	1.97
32156114--32156167	26	2.0	26	82	3	63	38	18	7	35	1.79
32171603--32171773	93	1.8	93	96	0	315	28	29	21	21	1.98
32171595--32171770	46	3.8	46	80	12	225	28	28	21	21	1.98
32176829--32176918	27	3.3	27	85	0	126	37	21	17	23	1.94
32189530--32189603	29	2.6	29	86	4	96	27	16	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32197168--32197197	2	15.0	2	100	0	60	50	0	0	50	1.00
32197648--32197745	27	3.5	28	90	2	135	26	13	28	31	1.94
32197676--32197758	27	3.0	27	87	5	96	30	12	25	32	1.92
32200425--32200457	16	2.1	16	100	0	66	18	33	30	18	1.94
32200444--32200564	46	2.6	46	87	5	165	22	29	18	29	1.97
32205852--32206438	292	2.0	292	97	0	1111	35	10	19	35	1.85
32210046--32210083	20	2.0	20	84	5	51	47	2	10	39	1.52
32213892--32214063	49	3.5	49	80	3	227	25	19	25	29	1.98
32213882--32214076	49	3.9	49	77	2	201	25	19	26	29	1.99
32213884--32214082	100	2.0	100	97	0	380	24	19	25	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167