genome.fa.s23.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  142  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47349987--47350633	324	2.0	324	98	0	1258	41	9	16	31	1.81
47350410--47350979	284	2.0	284	97	0	1086	39	9	18	32	1.83
47353041--47353216	46	3.8	46	77	12	198	28	28	21	21	1.98
47353090--47353228	47	3.0	46	73	16	135	29	28	19	23	1.98
47357702--47357781	40	2.0	40	97	0	151	21	32	18	27	1.97
47360241--47360405	47	3.5	47	79	14	223	28	27	20	23	1.99
47360195--47360454	93	2.8	93	98	0	493	28	28	20	22	1.99
47360183--47360451	46	5.8	46	76	14	275	28	28	20	21	1.98
47360234--47360463	47	5.0	45	71	18	179	29	28	19	23	1.98
47363567--47363596	15	1.9	16	93	6	53	70	0	30	0	0.88
47365048--47365133	21	4.1	21	86	0	100	16	22	25	36	1.94
47366038--47366133	25	3.8	25	78	0	102	32	21	22	22	1.98
47366034--47366133	50	2.0	50	86	0	137	34	21	22	23	1.97
47375731--47375938	111	1.9	109	89	3	321	40	11	8	39	1.72
47378994--47379034	16	2.7	16	88	7	59	60	4	0	34	1.18
47379310--47379418	10	11.3	10	66	18	52	60	0	3	34	1.21
47379310--47379453	20	7.5	19	67	20	68	61	0	4	34	1.20
47379305--47379387	28	2.9	29	84	10	100	65	0	4	30	1.14
47379310--47379387	10	8.2	10	74	17	60	64	0	3	32	1.12
47379353--47379483	20	6.7	19	67	11	68	57	0	4	37	1.25
47379689--47379895	20	10.6	19	71	12	100	37	5	1	54	1.36
47379801--47379885	18	4.5	19	68	10	57	42	3	0	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47379858--47379942	19	4.5	19	79	8	93	30	3	1	64	1.17
47379858--47379953	18	5.0	19	73	15	81	32	3	1	63	1.17
47383968--47384022	16	3.4	16	89	0	74	36	1	27	34	1.68
47384008--47384096	44	2.0	46	86	8	130	32	5	24	37	1.79
47384253--47384327	12	6.8	11	73	22	61	52	1	0	46	1.09
47384269--47384327	22	2.7	21	85	15	75	49	1	0	49	1.11
47384675--47384763	27	3.2	27	77	20	103	37	15	6	40	1.74
47386472--47386622	53	2.8	53	89	4	214	29	27	16	25	1.97
47393691--47393749	28	2.1	28	100	0	118	49	10	3	37	1.54
47394762--47394799	19	2.0	19	94	0	67	47	23	5	23	1.72
47399148--47399204	28	2.2	26	81	15	64	45	12	12	29	1.78
47402063--47402101	20	2.0	19	85	5	51	51	23	15	10	1.73
47415235--47415272	18	2.1	18	100	0	76	34	26	10	28	1.90
47446280--47446404	46	2.7	46	92	0	196	30	29	20	19	1.97
47446830--47446887	30	1.9	31	85	3	82	25	22	6	44	1.77
47453899--47453924	5	5.2	5	100	0	52	38	19	19	23	1.93
47453873--47453924	26	2.0	26	81	7	61	34	15	26	23	1.94
47454082--47454115	10	3.3	10	91	4	50	79	17	0	2	0.86
47454172--47454572	217	1.9	213	87	4	601	55	20	5	17	1.61
47455626--47455692	30	2.2	30	97	0	125	55	4	5	34	1.45
47455909--47455948	19	2.1	19	90	0	62	30	0	5	65	1.14
47457782--47457814	9	3.7	9	95	0	57	30	18	12	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47459089--47459143	11	4.9	11	80	12	51	27	1	0	70	0.97
47459089--47459162	30	2.5	31	78	10	82	24	4	1	70	1.13
47459104--47459143	17	2.4	16	88	12	55	25	2	0	72	0.97
47460844--47460923	6	13.3	6	89	0	97	16	5	3	75	1.13
47460844--47460923	18	4.4	18	85	6	108	16	5	3	75	1.13
47461871--47461902	5	6.6	5	92	7	57	81	0	18	0	0.70
47464276--47464322	20	2.4	20	89	3	69	42	10	6	40	1.65
47468801--47468926	57	2.2	58	82	5	148	23	20	6	49	1.72
47472235--47472273	15	2.6	15	83	0	51	2	69	15	12	1.30
47477598--47477622	12	2.1	12	100	0	50	60	8	0	32	1.26
47480654--47480786	50	2.6	51	83	1	169	36	10	28	24	1.89
47483911--47483964	28	2.0	27	85	3	72	35	7	29	27	1.84
47487116--47487168	25	2.2	24	86	3	70	16	22	20	39	1.92
47487130--47487187	23	2.4	25	80	8	66	17	22	18	41	1.90
47489318--47489422	43	2.4	43	87	6	133	34	23	16	25	1.95
47493862--47493916	27	2.0	27	100	0	110	29	14	18	38	1.90
47495450--47495501	24	2.2	24	96	0	95	30	19	21	28	1.97
47502147--47502195	21	2.4	20	77	16	55	38	0	10	51	1.36
47502740--47502796	24	2.3	25	81	6	71	26	17	15	40	1.90
47505408--47505460	24	2.2	24	78	15	56	20	20	22	35	1.96
47510566--47510590	8	3.1	8	100	0	50	24	0	0	76	0.80
47513191--47513320	43	3.0	43	78	13	140	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47515225--47515269	17	2.8	16	83	6	63	0	24	8	66	1.20
47528235--47528279	22	2.0	23	95	4	83	42	22	17	17	1.89
47528484--47528567	28	3.0	28	89	1	123	46	29	3	20	1.67
47528470--47528540	28	2.9	23	77	18	79	45	33	4	16	1.67
47543451--47543796	96	3.6	96	83	1	433	21	18	19	41	1.91
47543721--47543873	78	1.9	78	85	9	211	17	18	21	42	1.89
47543895--47544050	81	1.9	81	82	7	192	19	17	21	41	1.91
47543622--47544199	177	3.3	177	88	3	880	20	17	20	41	1.90
47544171--47544307	69	2.0	69	86	2	195	18	18	18	43	1.88
47544240--47544442	96	2.1	96	85	1	264	21	19	16	43	1.88
47545544--47545597	11	4.5	11	80	13	54	40	1	0	57	1.09
47555477--47555683	42	5.0	41	85	4	252	26	18	19	35	1.95
47559770--47559827	30	1.9	30	96	0	107	41	1	10	46	1.48
47560243--47560280	17	2.3	17	95	4	69	63	2	0	34	1.09
47567926--47567959	3	11.3	3	100	0	68	32	0	0	67	0.91
47569724--47570019	18	16.1	18	72	9	186	37	14	11	36	1.82
47569817--47570019	72	2.8	72	80	4	232	36	13	11	37	1.82
47570192--47570291	45	2.2	45	83	0	137	44	19	17	20	1.88
47570236--47570325	39	2.4	38	81	3	101	37	20	21	21	1.94
47571386--47571438	26	2.0	27	85	7	74	24	15	22	37	1.92
47571813--47571915	51	2.0	51	100	0	206	39	27	9	23	1.86
47572971--47573035	32	2.0	32	96	0	121	40	24	4	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47573318--47573351	17	1.9	18	94	5	61	17	11	0	70	1.16
47573318--47573351	9	3.9	9	88	7	52	17	11	0	70	1.16
47574970--47575013	16	2.8	15	79	6	52	20	43	2	34	1.64
47575481--47575509	14	2.0	15	93	6	51	6	20	6	65	1.40
47576831--47576898	29	2.3	30	87	5	93	48	4	17	29	1.67
47579445--47579491	19	2.5	19	76	10	51	72	4	2	21	1.12
47583867--47583917	24	2.1	24	100	0	102	35	23	7	33	1.84
47584916--47584943	12	2.3	12	100	0	56	14	25	25	35	1.93
47589724--47589987	46	5.8	45	80	5	163	40	17	21	20	1.91
47589816--47590005	46	4.2	46	88	0	256	43	16	21	18	1.88
47594757--47594817	30	2.0	30	87	0	86	31	22	6	39	1.80
47598198--47598226	13	2.2	13	100	0	58	41	0	0	58	0.98
47600021--47600084	33	2.0	32	90	3	101	39	25	9	26	1.86
47600299--47600454	41	3.8	41	87	6	217	29	22	19	28	1.98
47601990--47602014	13	1.9	13	100	0	50	68	24	0	8	1.16
47602213--47602262	21	2.3	21	83	10	57	38	0	16	46	1.47
47602208--47602289	30	2.9	28	71	20	73	35	0	19	45	1.51
47602385--47602439	20	2.5	21	76	23	60	47	0	12	40	1.42
47602570--47602673	44	2.3	45	88	1	147	22	20	15	42	1.89
47602659--47602683	6	4.2	6	100	0	50	16	16	16	52	1.76
47604103--47604270	89	1.9	89	88	2	255	32	19	19	28	1.97
47604369--47604976	75	8.2	75	91	4	930	34	20	15	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47604901--47605060	86	1.8	87	86	2	232	35	20	16	28	1.94
47605071--47605460	75	5.2	74	80	6	412	34	20	15	30	1.94
47605630--47605674	13	3.4	13	81	6	63	68	4	11	15	1.34
47605458--47605746	100	2.9	101	86	3	388	40	18	17	23	1.91
47605654--47605821	73	2.3	74	89	1	257	33	20	17	27	1.96
47625228--47625287	28	2.1	28	84	0	75	53	5	1	40	1.33
47625247--47625294	9	5.2	9	76	14	53	47	2	0	50	1.12
47626357--47626427	18	3.9	18	75	18	67	61	1	1	35	1.13
47626359--47626406	16	2.7	18	78	15	55	62	0	0	37	0.95
47628375--47628473	30	3.3	30	89	0	162	18	6	48	27	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167