genome.fa.s23.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  112  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37583633--37583874	50	4.8	50	81	2	250	30	25	19	24	1.98
37583640--37583823	101	1.8	101	91	0	305	29	25	20	25	1.99
37587391--37587426	16	2.2	17	90	5	56	8	22	8	61	1.51
37587473--37587510	5	7.8	5	94	5	69	81	0	0	18	0.69
37594424--37594584	50	3.3	49	74	12	154	26	29	18	26	1.98
37605818--37605844	12	2.2	12	100	0	54	14	25	7	51	1.68
37610521--37610676	27	5.8	27	91	0	240	30	13	17	37	1.89
37610603--37610739	27	5.1	27	84	5	93	35	16	18	30	1.92
37610522--37610703	54	3.4	54	83	5	181	32	14	17	35	1.90
37610522--37610703	81	2.2	80	83	5	224	32	14	17	35	1.90
37610666--37610753	27	3.3	27	76	9	90	42	18	19	20	1.90
37610804--37610846	23	1.9	23	86	13	63	23	16	16	44	1.86
37612169--37612204	12	3.0	12	83	0	54	36	0	36	27	1.57
37623539--37623638	50	2.0	50	86	3	139	31	10	23	36	1.87
37627252--37627327	40	1.9	40	83	5	100	34	17	21	27	1.95
37629275--37629350	27	2.8	28	82	7	95	40	19	22	17	1.91
37630923--37631034	43	2.6	43	94	0	197	28	34	25	10	1.90
37631027--37631228	38	5.3	38	88	2	287	28	26	23	21	1.99
37631032--37631228	78	2.6	76	87	3	295	28	25	23	22	1.99
37631229--37631378	75	2.0	75	100	0	300	33	22	6	37	1.80
37635484--37635747	85	3.1	85	98	0	510	37	8	27	26	1.85
37637629--37638122	47	10.5	47	92	3	762	34	7	27	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37641006--37641078	38	1.9	38	86	5	103	31	19	24	24	1.98
37641134--37641294	40	4.1	40	88	0	225	26	21	26	24	2.00
37641457--37641506	25	2.0	25	84	7	66	30	12	32	26	1.92
37642550--37642728	85	2.1	85	100	0	358	37	8	27	26	1.85
37646494--37646542	4	12.5	4	76	20	50	75	2	2	20	1.00
37646489--37646542	17	3.1	17	86	5	81	75	1	1	20	0.98
37669594--37669626	14	2.4	14	90	10	50	60	0	0	39	0.97
37683069--37683122	22	2.5	22	81	3	65	18	35	31	14	1.91
37689009--37689055	25	1.9	25	86	4	69	48	0	4	46	1.21
37689019--37689070	15	3.3	15	75	8	50	59	0	1	38	1.08
37689050--37689097	25	2.0	24	88	12	71	68	2	0	29	1.01
37689479--37689531	13	4.1	13	80	9	72	28	5	28	37	1.80
37695691--37695725	2	17.5	2	100	0	70	0	0	48	51	1.00
37700439--37700630	72	2.6	72	93	1	312	21	13	18	47	1.82
37700545--37700570	11	2.4	11	100	0	52	15	7	26	50	1.71
37703907--37704016	26	4.2	26	97	0	184	36	24	5	33	1.79
37704962--37705020	28	2.1	28	96	0	109	33	25	13	27	1.93
37709124--37709285	26	6.2	26	92	0	252	35	23	6	33	1.81
37709722--37709938	32	6.8	32	83	0	272	30	13	8	47	1.73
37709738--37709938	64	3.1	64	94	1	332	30	14	8	46	1.75
37713126--37713803	47	14.4	47	91	0	1041	32	8	30	28	1.87
37713156--37713234	25	3.3	25	64	16	67	32	5	30	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37713325--37713397	22	3.2	22	66	17	58	32	9	30	27	1.89
37717480--37717532	21	2.5	21	90	0	79	32	37	7	22	1.82
37722243--37722281	21	1.9	20	84	5	51	28	0	2	69	1.02
37725771--37725825	27	2.0	27	89	0	83	38	10	32	18	1.85
37728086--37728124	19	2.0	20	90	5	62	46	5	5	43	1.48
37728089--37728132	19	2.3	19	84	7	54	47	2	6	43	1.42
37730099--37730124	7	3.7	7	100	0	52	38	0	0	61	0.96
37730107--37730147	20	2.2	19	86	8	57	26	0	2	70	0.99
37730712--37730746	18	1.9	18	100	0	70	31	5	17	45	1.71
37737694--37737728	18	1.9	18	88	0	52	45	0	8	45	1.34
37738341--37738384	22	2.0	23	86	4	63	47	6	0	45	1.29
37738482--37738521	21	1.9	21	85	10	55	75	0	5	20	0.99
37745039--37745070	15	2.1	15	94	0	55	75	9	0	15	1.05
37745282--37745306	13	1.9	13	100	0	50	32	16	16	36	1.90
37755923--37756569	327	2.0	327	89	2	1005	26	19	22	31	1.97
37761399--37761433	18	2.0	18	88	5	54	68	0	0	31	0.90
37761686--37761743	22	2.6	22	81	7	64	41	17	5	36	1.72
37761722--37761758	19	1.9	19	100	0	74	35	16	10	37	1.83
37762113--37762380	45	5.9	45	75	8	240	26	26	15	31	1.96
37762320--37762552	78	3.0	78	91	2	387	25	24	18	31	1.97
37766912--37766956	23	2.0	23	95	0	81	11	40	8	40	1.72
37770734--37770768	18	2.0	18	88	5	54	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37771035--37771080	23	2.0	22	87	4	65	36	17	6	39	1.76
37771059--37771130	19	3.9	19	85	10	114	34	16	11	37	1.84
37771052--37771130	35	2.2	37	84	13	112	34	17	10	37	1.84
37771091--37771128	17	2.5	15	87	12	51	34	15	10	39	1.82
37774604--37774631	6	4.7	6	100	0	56	0	0	14	85	0.59
37778520--37778554	13	2.7	13	90	0	52	31	11	0	57	1.34
37779365--37779412	24	2.0	24	95	0	87	20	27	12	39	1.89
37780244--37780372	66	2.0	65	86	6	179	44	20	22	12	1.84
37780712--37780917	43	4.9	41	76	8	168	30	17	22	29	1.97
37780764--37780910	40	3.5	40	75	13	136	29	16	23	31	1.96
37783392--37783575	24	7.7	24	67	12	101	60	3	5	30	1.37
37783459--37783575	25	4.7	25	70	17	91	59	3	5	30	1.38
37783523--37783582	28	2.1	29	81	6	68	63	3	8	25	1.38
37783789--37783869	24	3.2	25	77	18	87	58	1	4	35	1.28
37783831--37783876	24	1.9	24	86	0	65	54	2	6	36	1.39
37783789--37783887	50	1.9	52	80	11	116	55	2	7	35	1.39
37791993--37792036	21	2.1	21	95	0	79	45	4	6	43	1.51
37795368--37795396	14	2.1	14	100	0	58	48	13	24	13	1.79
37804342--37804408	17	4.0	17	75	9	66	35	0	4	59	1.18
37804356--37804470	41	2.7	43	76	14	112	33	0	2	63	1.08
37806380--37806421	20	2.0	22	86	9	61	45	0	0	54	0.99
37806431--37806503	27	3.0	23	75	16	67	50	4	0	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37806762--37806800	14	2.8	14	92	0	69	41	12	0	46	1.42
37822713--37822749	19	1.9	19	88	0	56	27	0	2	70	1.01
37822684--37822762	29	2.8	28	75	11	72	29	1	5	64	1.22
37822722--37822764	19	2.3	19	84	11	54	20	0	6	72	1.08
37822682--37822786	48	2.2	48	80	10	117	31	0	4	62	1.22
37831994--37832036	22	1.9	23	85	4	61	18	2	9	69	1.26
37845989--37846040	15	3.5	14	76	10	50	82	1	9	5	0.90
37845995--37846031	12	2.8	14	76	16	51	83	0	8	8	0.80
37847079--37847105	14	1.9	14	100	0	54	59	7	7	25	1.51
37847136--37847389	64	4.0	64	88	1	341	30	17	14	37	1.90
37847810--37847912	44	2.3	45	80	5	111	27	20	25	27	1.99
37847587--37848368	176	4.4	177	87	3	997	30	19	23	26	1.98
37847585--37848368	353	2.2	353	86	2	1058	30	19	23	26	1.98
37848277--37848465	100	1.9	100	86	0	270	31	19	23	25	1.98
37855852--37855879	6	4.7	6	100	0	56	17	0	0	82	0.68
37856527--37856560	3	11.3	3	93	0	59	35	0	0	64	0.94
37857420--37857486	30	2.3	29	85	7	91	58	11	0	29	1.34
37861685--37861811	60	2.1	60	98	1	247	34	21	14	29	1.93
37871322--37873222	798	2.4	796	97	0	3525	24	23	16	35	1.95
37882130--37882222	18	5.2	18	85	0	123	29	22	15	33	1.94
37886839--37887003	18	9.2	18	90	0	258	29	25	15	30	1.96
37886845--37887003	36	4.4	36	98	0	300	29	25	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37891057--37891087	11	2.8	11	95	0	53	19	48	3	29	1.64
37893853--37893900	19	2.6	19	90	3	80	37	2	12	47	1.53
37893912--37893992	42	1.9	42	89	0	126	30	3	14	50	1.60
37895119--37895169	22	2.3	22	79	0	57	60	0	0	39	0.97
37895311--37895366	30	2.0	27	86	10	76	57	0	0	42	0.99
37895577--37895628	26	2.0	26	81	11	61	28	1	3	65	1.21
37895606--37895649	21	2.2	21	84	8	56	22	2	6	68	1.25
37898589--37898620	4	8.0	4	100	0	64	25	0	0	75	0.81
37899308--37899382	36	2.1	36	82	5	89	49	1	0	49	1.09
37899301--37899364	28	2.3	26	80	17	67	45	1	0	53	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167