genome.fa.s23.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  74  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23557173--23557675	47	10.6	47	90	3	776	28	29	8	33	1.87
23557173--23557675	96	5.3	96	94	2	869	28	29	8	33	1.87
23557173--23557675	143	3.5	144	91	3	822	28	29	8	33	1.87
23564670--23564883	40	5.4	40	83	5	247	24	22	27	25	2.00
23564670--23564866	79	2.5	80	84	5	247	24	21	27	25	2.00
23564933--23565357	40	10.6	40	83	6	488	25	21	27	25	1.99
23564622--23565147	263	2.0	263	99	0	1034	24	19	26	28	1.99
23564970--23565376	200	2.0	199	97	0	778	26	21	27	24	1.99
23571322--23571674	40	8.8	40	92	1	528	23	22	30	24	1.99
23576274--23576498	40	5.7	40	83	7	244	25	27	21	25	2.00
23577627--23577802	56	3.1	56	96	0	325	23	22	9	44	1.81
23578361--23578493	40	3.4	38	80	7	133	23	27	24	24	2.00
23578386--23578690	40	7.7	40	85	1	337	26	25	22	25	2.00
23578386--23578690	120	2.5	120	84	2	373	26	25	22	25	2.00
23583246--23583367	43	2.9	41	76	13	131	31	26	18	24	1.97
23588414--23588487	34	2.2	34	90	2	114	27	21	20	31	1.98
23590093--23590259	27	6.2	27	87	0	235	29	8	22	38	1.84
23590066--23590253	54	3.5	54	87	1	180	29	10	21	38	1.86
23590093--23590259	81	2.1	81	91	0	271	29	8	22	38	1.84
23590588--23590651	28	2.3	28	88	0	92	26	35	17	20	1.94
23596258--23596416	43	3.7	43	79	13	166	30	25	20	23	1.98
23596253--23596417	86	1.9	85	82	6	208	30	25	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23598727--23598883	43	3.7	43	79	9	169	31	25	18	24	1.98
23598727--23598886	86	1.9	85	83	11	211	31	25	18	24	1.98
23604241--23604279	20	2.0	20	90	10	62	66	0	7	25	1.18
23605135--23605307	43	4.0	43	73	10	147	23	17	27	31	1.97
23612007--23612226	49	4.5	48	77	10	205	22	29	20	28	1.98
23616552--23616595	18	2.4	18	81	7	54	52	13	13	20	1.74
23616757--23616837	27	3.0	27	78	8	85	34	22	24	18	1.96
23617050--23617131	27	3.1	26	85	5	101	39	20	20	19	1.93
23617357--23617578	27	8.2	27	86	4	295	27	19	18	35	1.94
23617671--23617859	54	3.5	54	87	0	261	29	8	22	39	1.84
23617623--23617849	27	8.4	27	84	1	199	29	9	21	40	1.84
23638884--23638921	19	2.0	20	85	15	53	39	23	0	36	1.55
23639139--23639309	93	1.8	93	96	0	315	28	29	21	21	1.98
23639134--23639306	46	3.7	46	80	13	219	28	28	21	21	1.98
23639729--23639788	30	2.0	30	90	0	93	30	25	8	36	1.85
23642125--23642183	16	3.7	16	82	8	75	50	18	20	10	1.75
23642395--23642527	29	4.7	28	78	7	126	28	12	31	27	1.93
23646184--23646371	49	3.8	49	80	2	232	26	18	26	28	1.98
23646179--23646366	100	1.9	100	94	0	331	25	19	26	28	1.99
23646907--23647347	220	2.0	220	100	0	882	36	10	21	31	1.88
23649271--23649326	22	2.5	22	88	0	85	12	33	30	23	1.92
23650177--23650214	19	2.0	19	100	0	76	26	21	0	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23657718--23657806	33	2.7	33	80	0	97	41	15	23	19	1.89
23660152--23660182	3	10.3	3	100	0	62	67	0	0	32	0.91
23664773--23664877	47	2.2	47	96	0	192	27	30	7	34	1.85
23678828--23678868	15	2.8	15	82	13	50	17	9	4	68	1.35
23687100--23687130	16	1.9	16	93	0	53	35	22	0	41	1.54
23687097--23687136	20	2.0	20	85	0	53	37	22	0	40	1.54
23687369--23687576	55	3.8	53	81	7	240	22	25	17	35	1.95
23687369--23687569	108	1.8	110	90	4	327	22	25	17	34	1.96
23688177--23688213	19	1.9	19	100	0	74	59	21	2	16	1.49
23689296--23689377	40	2.1	39	93	2	137	45	13	9	31	1.76
23690285--23690455	93	1.8	93	96	0	315	28	29	21	21	1.98
23690277--23690452	46	3.8	46	80	12	225	28	28	21	21	1.98
23692161--23692231	22	3.2	22	71	11	72	30	2	21	45	1.66
23692169--23692233	23	2.9	22	68	19	53	30	4	20	44	1.71
23692161--23692257	45	2.2	45	86	3	133	30	7	19	42	1.78
23694376--23694673	40	7.5	40	94	1	476	25	28	23	22	1.99
23699653--23699707	20	2.8	20	97	0	101	20	9	27	43	1.81
23701029--23701084	26	2.2	26	93	0	94	30	8	21	39	1.84
23702952--23703194	121	2.0	121	95	0	441	26	17	26	29	1.97
23710748--23710787	20	2.0	20	100	0	80	20	10	20	50	1.76
23712950--23713007	22	2.6	22	81	7	64	41	17	5	36	1.72
23712977--23713024	19	2.5	19	75	25	55	33	16	8	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23712986--23713039	17	2.9	19	89	10	94	35	14	11	38	1.82
23713158--23713196	21	1.9	20	84	5	51	10	2	15	71	1.23
23713389--23713500	45	2.5	45	85	1	145	25	31	11	31	1.91
23713587--23713811	78	2.9	78	95	0	396	25	23	16	33	1.96
23713570--23713828	78	3.3	78	91	2	378	25	22	17	33	1.96
23715936--23716009	29	2.6	29	89	4	105	25	16	32	25	1.96
23731448--23731481	17	1.9	18	88	5	52	73	0	0	26	0.83
23731737--23731812	22	3.7	21	76	15	68	40	17	6	35	1.75
23731766--23731844	35	2.2	37	86	13	121	35	16	10	37	1.82
23731787--23731842	17	3.5	15	88	9	60	35	16	10	37	1.83
23731773--23731844	19	3.9	19	89	10	123	36	15	11	37	1.83
23735085--23735233	44	3.5	42	76	18	137	25	18	24	31	1.97
23735083--23735233	43	3.5	43	77	11	130	25	18	24	31	1.98
23741020--23741044	13	1.9	13	100	0	50	32	16	40	12	1.84
23748557--23748747	6	31.0	6	68	16	97	49	14	17	18	1.79
23748620--23748686	25	2.7	25	85	0	89	49	11	17	20	1.79
23748571--23748652	37	2.2	37	82	0	92	52	13	15	18	1.75
23748626--23748718	19	4.6	19	74	21	91	49	12	17	20	1.79
23748683--23748745	25	2.5	25	86	0	81	47	17	17	17	1.83
23748557--23748747	62	3.1	62	84	3	235	49	14	17	18	1.79
23748983--23749033	27	1.9	26	84	4	66	35	17	27	19	1.94
23749277--23749447	27	6.3	27	90	2	213	23	19	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23749278--23749445	54	3.1	54	89	0	237	23	20	19	36	1.95
23749281--23749447	81	2.1	80	86	3	235	23	20	19	37	1.94
23749481--23749770	27	10.7	27	86	2	307	30	8	21	39	1.84
23751059--23751313	6	41.3	6	73	16	175	49	14	17	18	1.80
23751082--23751160	37	2.1	37	88	0	113	54	15	12	17	1.71
23751125--23751313	25	7.6	25	82	7	169	47	14	18	19	1.82
23751125--23751285	62	2.6	62	97	0	91	47	15	18	18	1.82
23751209--23751285	37	2.1	37	92	0	127	46	16	19	16	1.84
23751148--23751310	62	2.6	62	99	0	86	46	15	19	18	1.84
23751431--23751479	21	2.3	21	100	0	98	34	20	22	22	1.97
23751453--23751512	27	2.3	26	82	2	66	36	20	21	21	1.95
23751859--23752107	27	9.2	27	81	4	238	24	20	18	36	1.95
23751863--23752107	54	4.6	54	84	1	296	24	21	17	36	1.95
23751863--23752105	81	3.0	79	86	5	308	24	21	17	36	1.95
23752147--23752406	27	9.6	27	84	4	231	28	10	21	39	1.86
23752201--23752406	27	7.6	27	88	0	259	29	10	20	39	1.85
23752578--23752620	17	2.5	17	100	0	86	11	34	34	18	1.87
23765230--23765299	35	2.0	35	100	0	140	20	22	22	34	1.97
23765950--23766005	10	5.7	9	80	16	58	69	1	5	23	1.18
23765946--23766005	20	3.0	19	87	4	84	70	1	6	21	1.20
23765944--23766003	30	2.0	31	84	15	81	70	1	6	21	1.20
23766626--23766659	8	4.2	8	88	11	52	2	11	0	85	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23766630--23766659	15	1.9	16	93	6	53	3	10	0	86	0.67
23766671--23766857	96	1.9	97	89	3	288	29	26	14	28	1.95
23767607--23767681	30	2.3	30	77	11	78	70	0	1	28	0.95
23771373--23771432	10	6.0	10	84	11	79	68	1	8	21	1.25
23777485--23777693	46	4.5	46	74	12	160	26	18	31	24	1.97
23783811--23783913	2	51.5	2	100	0	206	50	0	49	0	1.00
23787413--23787463	25	2.0	25	92	0	84	27	33	0	39	1.57
23791872--23791918	20	2.4	19	85	3	58	34	2	4	59	1.29
23795076--23795232	42	3.7	42	76	12	117	25	17	25	31	1.97
23800293--23800325	16	1.9	18	88	11	52	51	18	12	18	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167