genome.fa.s23.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  55438857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   

This is table  81  of  167  ( 19959 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26429142--26429392	55	4.7	53	78	8	217	23	24	17	35	1.95
26429189--26429333	53	2.7	53	83	4	175	23	24	17	33	1.96
26431700--26431755	28	2.0	28	96	0	103	35	16	17	30	1.92
26433088--26433139	18	2.7	19	77	16	63	26	0	1	71	0.97
26434737--26434794	18	3.2	18	85	2	71	10	8	5	75	1.17
26440418--26440696	99	2.7	100	82	9	332	48	13	7	30	1.69
26440705--26440735	12	2.6	12	94	0	53	74	3	3	19	1.10
26441684--26441725	18	2.3	18	84	11	59	40	2	4	52	1.35
26444292--26445950	830	2.0	827	97	0	3131	34	9	20	34	1.85
26447823--26447856	17	2.0	17	100	0	68	41	17	17	23	1.90
26457871--26457927	27	2.1	27	100	0	114	22	10	24	42	1.85
26458823--26458892	24	2.8	24	78	4	77	45	2	4	47	1.37
26462124--26462159	18	2.0	18	89	10	56	22	5	16	55	1.62
26464139--26464342	51	4.0	51	96	0	363	30	25	13	30	1.93
26466235--26466342	26	4.2	26	93	0	189	32	7	24	36	1.83
26476738--26476782	22	2.0	22	86	0	63	37	2	2	57	1.23
26483379--26483471	46	2.0	46	100	0	186	44	17	15	23	1.86
26487193--26487265	24	3.0	24	83	0	83	32	19	31	16	1.94
26496617--26496729	43	2.6	43	84	2	120	31	14	20	33	1.92
26497536--26497815	139	2.0	139	93	0	479	25	9	25	40	1.86
26499623--26499706	23	3.7	23	93	0	141	15	35	28	20	1.93
26508676--26508709	17	2.0	17	94	0	59	23	20	5	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26511546--26511621	31	2.5	31	86	0	116	19	30	31	18	1.96
26529300--26529444	27	5.4	27	89	2	177	24	23	11	40	1.87
26529273--26529402	54	2.4	53	80	5	127	29	24	10	36	1.88
26529408--26529561	27	5.8	26	72	8	94	35	20	12	31	1.90
26529476--26529613	27	5.1	27	75	6	109	42	20	6	30	1.77
26529555--26529662	27	3.9	27	74	13	94	44	16	5	33	1.71
26530590--26530659	25	2.8	24	91	4	104	24	27	24	24	2.00
26530589--26530672	25	3.4	24	83	8	98	27	23	23	25	2.00
26530879--26530961	31	2.7	31	96	3	152	28	16	26	27	1.97
26530975--26531029	29	1.9	28	88	3	83	21	23	27	27	1.99
26530967--26531057	33	2.8	33	73	19	93	24	20	26	28	1.99
26533120--26533180	27	2.3	27	82	0	68	32	27	8	31	1.86
26533104--26533233	54	2.4	54	82	5	138	30	24	10	35	1.88
26533131--26533275	27	5.4	27	85	2	177	26	23	11	39	1.88
26533239--26533409	27	6.4	26	72	7	101	35	19	12	31	1.90
26533307--26533508	27	7.4	27	75	7	124	41	17	9	32	1.81
26533307--26533488	54	3.3	55	79	6	165	41	18	8	31	1.81
26533547--26533611	27	2.4	27	79	5	69	38	18	23	20	1.93
26534429--26534488	25	2.4	25	85	0	84	25	33	18	23	1.97
26534429--26534498	25	2.8	25	82	2	61	30	28	15	25	1.96
26534711--26534793	31	2.7	31	92	3	134	28	16	26	27	1.97
26542673--26542719	23	2.1	22	88	4	67	59	12	0	27	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26544571--26544928	48	7.4	48	79	3	360	26	25	18	29	1.98
26544573--26544928	96	3.7	96	84	2	444	26	25	18	29	1.98
26544560--26544931	144	2.6	144	79	5	399	26	26	18	28	1.98
26546117--26546164	24	2.0	24	100	0	96	33	25	4	37	1.75
26554540--26554715	27	6.5	27	82	3	102	31	27	14	27	1.95
26554538--26554715	54	3.3	55	81	3	191	30	27	14	26	1.95
26556956--26556995	21	2.0	20	85	5	53	20	25	40	15	1.90
26565844--26565883	21	2.0	21	90	5	64	20	27	40	12	1.88
26568416--26568464	22	2.2	23	81	3	55	38	14	18	28	1.90
26572389--26572865	47	10.7	47	84	9	549	29	15	24	31	1.95
26572531--26572903	38	8.8	38	77	14	233	29	15	24	30	1.96
26572384--26572818	218	2.0	218	96	0	798	29	15	24	31	1.95
26572702--26572903	85	2.4	85	96	0	377	29	15	25	30	1.96
26575683--26575867	42	4.3	42	75	11	149	27	25	17	29	1.98
26575671--26575838	90	1.9	90	84	2	230	25	26	18	29	1.98
26575709--26575918	42	4.7	44	79	7	176	28	26	17	27	1.97
26575843--26576062	48	4.6	48	76	7	153	27	30	15	26	1.96
26585277--26585657	40	9.5	40	96	1	633	25	25	23	24	2.00
26588615--26588675	30	2.0	30	90	0	95	39	8	24	27	1.84
26589489--26589679	51	3.8	51	85	4	269	27	18	24	29	1.98
26589489--26589682	101	1.9	101	92	0	325	27	18	24	29	1.98
26593317--26593632	46	6.7	46	74	12	232	23	31	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26598149--26598251	43	2.4	42	91	6	163	31	22	15	31	1.95
26604386--26604501	29	4.0	29	81	1	135	29	31	15	23	1.95
26610348--26610473	46	2.7	47	81	7	132	23	30	19	27	1.98
26625388--26625508	40	3.0	40	87	4	156	22	23	25	28	1.99
26626496--26626536	17	2.4	17	88	8	57	39	0	17	43	1.49
26626942--26626994	24	2.2	24	86	0	70	16	43	7	32	1.76
26631668--26631692	10	2.5	10	100	0	50	28	20	12	40	1.87
26635604--26635671	33	2.1	33	100	0	136	25	17	17	39	1.91
26637383--26637435	18	2.9	18	100	0	106	22	20	11	45	1.83
26641280--26641416	40	3.5	40	91	4	208	21	28	24	24	1.99
26644306--26644439	46	2.9	45	80	8	146	31	17	26	23	1.97
26644491--26644611	49	2.5	49	82	8	156	27	22	28	21	1.99
26655469--26655585	43	2.8	41	73	12	103	24	22	24	28	1.99
26661717--26661934	46	4.6	47	77	8	185	28	20	29	21	1.98
26661807--26661989	98	1.9	99	82	6	239	28	20	27	23	1.99
26661721--26661990	49	5.6	48	76	8	180	28	20	28	22	1.98
26665508--26665545	18	2.1	19	90	5	60	34	0	2	63	1.09
26665620--26665729	50	2.2	50	93	0	184	32	16	13	37	1.88
26665633--26665733	50	2.0	50	98	0	193	30	15	14	38	1.88
26678242--26678342	48	2.1	48	94	0	175	36	2	22	37	1.70
26678570--26678622	24	2.2	25	96	3	99	28	3	32	35	1.75
26683450--26683521	28	2.5	28	77	6	83	40	18	12	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26685094--26685127	8	4.4	8	92	7	61	73	0	0	26	0.83
26685094--26685127	15	2.2	15	94	5	59	73	0	0	26	0.83
26685236--26685275	20	2.1	19	90	4	62	60	2	0	37	1.11
26688405--26688442	5	7.6	5	100	0	76	60	0	0	39	0.97
26688422--26688463	18	2.3	19	84	8	52	64	4	0	30	1.14
26696843--26696903	30	2.1	29	93	3	104	37	21	16	24	1.93
26702415--26702592	27	6.6	27	84	3	205	29	28	15	26	1.96
26702436--26702591	82	1.9	81	88	3	233	29	28	15	26	1.96
26703076--26703102	12	2.2	12	100	0	54	40	0	7	51	1.30
26707043--26707106	18	3.5	18	82	14	51	62	3	0	34	1.11
26707048--26707085	5	7.6	5	100	0	76	60	0	0	39	0.97
26707149--26707199	14	3.8	14	82	15	63	70	1	27	0	0.98
26707877--26707915	16	2.4	17	91	8	64	48	0	0	51	1.00
26717854--26718005	77	2.0	77	85	0	205	31	17	21	29	1.96
26717931--26718313	92	4.2	92	86	0	525	31	19	22	26	1.98
26718777--26718854	21	3.7	20	75	10	66	24	24	37	14	1.92
26719620--26719669	26	1.9	26	83	0	64	68	2	16	14	1.31
26724239--26724281	20	2.2	19	83	8	50	37	0	4	58	1.19
26735610--26735639	15	2.0	15	93	0	51	40	36	6	16	1.75
26742271--26742354	26	3.3	26	91	8	131	27	23	19	29	1.98
26742404--26742478	20	3.8	20	87	6	102	34	20	8	37	1.82
26742419--26742471	11	5.2	11	73	15	51	35	20	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26742421--26742477	9	5.8	10	76	15	57	35	21	7	36	1.80
26756263--26756315	13	4.1	13	95	0	97	15	30	37	16	1.90
26770453--26770604	54	2.8	54	100	0	304	34	14	24	26	1.94
26773579--26773745	47	3.6	47	90	0	244	32	8	30	28	1.87
26773864--26773955	37	2.5	37	94	0	157	26	18	31	23	1.97
26775317--26775507	61	3.0	63	78	17	212	42	3	4	49	1.39
26782375--26782504	48	2.7	49	78	4	147	26	25	19	29	1.98
26782522--26782639	46	2.5	46	84	5	139	22	26	20	30	1.98
26785414--26785449	18	2.0	18	88	0	54	25	22	13	38	1.91
26789474--26789650	40	4.5	40	90	4	254	24	23	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167